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Lsi02G020930 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G020930
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSm-like protein LSM2
Genome locationchr02:27125002..27127659
RNA-Seq ExpressionLsi02G020930
SyntenyLsi02G020930
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0000932 - P-body (cellular component)
GO:0005688 - U6 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0120115 - Lsm2-8 complex (cellular component)
GO:1990726 - Lsm1-7-Pat1 complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR016654 - U6 snRNA-associated Sm-like protein LSm2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5947938.1 hypothetical protein HYC85_013895 [Camellia sinensis]6.0e-4390.29Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHM          LSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA

Query:  RGG
        RGG
Subjt:  RGG
XP_008461281.1 PREDICTED: sm-like protein LSM2 [Cucumis melo]7.9e-4389.32Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHM          LSVRNCFIRGSVVRYVQLPPDGVD+ELLHDATRREA
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA

Query:  RGG
        RGG
Subjt:  RGG
XP_010038129.1 sm-like protein LSM2 [Eucalyptus grandis]6.0e-4390.29Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHM          LSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA

Query:  RGG
        RGG
Subjt:  RGG
XP_039035726.1 sm-like protein LSM2 [Hibiscus syriacus]7.9e-4389.32Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRV+DQDKYPHM          LSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA

Query:  RGG
        RGG
Subjt:  RGG
XP_039061884.1 sm-like protein LSM2 [Hibiscus syriacus]6.0e-4390.29Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHM          LSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA

Query:  RGG
        RGG
Subjt:  RGG
TrEMBL top hitse value%identityAlignment
A0A0B0N830 Sm-like protein LSM22.9e-4390.29Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHM          LSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA

Query:  RGG
        RGG
Subjt:  RGG
A0A5D2BJZ3 Sm-like protein LSM22.9e-4390.29Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHM          LSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA

Query:  RGG
        RGG
Subjt:  RGG
A0A5D2TT01 Sm-like protein LSM22.9e-4390.29Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHM          LSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA

Query:  RGG
        RGG
Subjt:  RGG
A0A5J5UQ23 Sm-like protein LSM22.9e-4390.29Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHM          LSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA

Query:  RGG
        RGG
Subjt:  RGG
A0A6J1E038 Sm-like protein LSM22.9e-4390.29Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHM          LSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA

Query:  RGG
        RGG
Subjt:  RGG
SwissProt top hitse value%identityAlignment
O35900 U6 snRNA-associated Sm-like protein LSm21.6e-3067Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D +KYPHM          LSV+NCFIRGSVVRYVQLP D VD +LL DA R+EA
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
P38203 U6 snRNA-associated Sm-like protein LSm21.7e-2459.6Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRRE
        MLFFS+FK LV +EV VELKND+ I+GTL SVDQ+LN+KL+N    D+ KYPH+           SVRN FIRGS VRYV L  + VD  LL DATRRE
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRRE
Q1H595 Sm-like protein LSM22.2e-4385.44Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHM          LSVRNCFIRGSVVRYVQLP DGVD++LLHDA RREA
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA

Query:  RGG
        RGG
Subjt:  RGG
Q54TF6 Probable U6 snRNA-associated Sm-like protein LSm25.7e-2860.4Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        MLFFS++K LVG+E+TVELKNDL+I G L SVDQ+LNIKL++ +V ++DKYP+M          +SV+NCFIRGSVVRYV LP + VD+E L D +R EA
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA

Query:  R
        R
Subjt:  R
Q9Y333 U6 snRNA-associated Sm-like protein LSm21.6e-3067Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D +KYPHM          LSV+NCFIRGSVVRYVQLP D VD +LL DA R+EA
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
Arabidopsis top hitse value%identityAlignment
AT1G03330.1 Small nuclear ribonucleoprotein family protein1.5e-4485.44Show/hide
Query:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHM          LSVRNCFIRGSVVRYVQLP DGVD++LLHDA RREA
Subjt:  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA

Query:  RGG
        RGG
Subjt:  RGG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTATTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACAGTTGAGTTGAAGAACGACCTAGCAATTCGAGGAACTCTGCATTCTGTAGATCAGTATCTCAA
CATCAAACTGGAAAACACAAGGGTTGTTGATCAAGACAAATACCCTCACATGACTAATGGAGTTCAAGTTTTCTCTTTTCAGCTTTCTGTGAGAAACTGTTTTATCAGGG
GATCGGTGGTGAGATATGTTCAACTTCCACCAGATGGTGTTGACATCGAACTGCTGCATGATGCCACGAGACGCGAGGCTCGGGGTGGCTAA
mRNA sequenceShow/hide mRNA sequence
AAAAGAAAGAAACTTGCCATTCTTTGTCTTTTAGGTCGCCGCATACCCCCATCTTCTCCTTCCTCTGCGTAACACCCAGCGCGCGCGCACACCTTCGACTTCCAGCCACT
GCCTCACCGCCCACTTGCAACGCACGTCCGCGCCGTGACCGCCATTCGTCGCCGTCGGGGAGGTTATCATCGGGTTCCAGCCGCCGAACGTCGCTGCAGGTGGAGCGCGA
GTTTTGTCGCCGGCCGTCGTCGCAGCCACCACCTTTTTATCATCCTTCTTTGGCTCAGACGGCTTTTCAACCTTTACCAGCTGTCAATCGTCGAGAGTAGATAGACTGAA
GGTTGGCACCTCAAACCTCTAGTGAAAATGTTATTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACAGTTGAGTTGAAGAACGACCTAGCAATTCGAGGAAC
TCTGCATTCTGTAGATCAGTATCTCAACATCAAACTGGAAAACACAAGGGTTGTTGATCAAGACAAATACCCTCACATGACTAATGGAGTTCAAGTTTTCTCTTTTCAGC
TTTCTGTGAGAAACTGTTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCACCAGATGGTGTTGACATCGAACTGCTGCATGATGCCACGAGACGCGAGGCTCGG
GGTGGCTAA
Protein sequenceShow/hide protein sequence
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQVFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG