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Lsi02G020950 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G020950
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionAuxin-responsive protein
Genome locationchr02:27157165..27157449
RNA-Seq ExpressionLsi02G020950
SyntenyLsi02G020950
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008455985.1 PREDICTED: auxin-responsive protein IAA16 isoform X1 [Cucumis melo]1.7e-0444.58Show/hide
Query:  ESEGMIINFEQREPRLGFPGGGVSNDGEIQASKSSFGLLFLEGVDLKFNVASSMASGNEEAMKMGREEFFTQ---NATKPPSK
        E   ++INFEQ E RLG PGG     G+   S S+    F+E VDLK N+ASSMAS  EE   +   +  +Q   +  KPPSK
Subjt:  ESEGMIINFEQREPRLGFPGGGVSNDGEIQASKSSFGLLFLEGVDLKFNVASSMASGNEEAMKMGREEFFTQ---NATKPPSK

XP_011648754.1 auxin-responsive protein IAA16 [Cucumis sativus]7.8e-0546.99Show/hide
Query:  ESEGMIINFEQREPRLGFPGGGVSNDGEIQASKSSFGLLFLEGVDLKFNVASSMASGNEEAMKMGREEFFTQ---NATKPPSK
        E   ++INFEQ E RLG PGG    DG    S S+    F+E VDLK N+ASSMAS  EEA  +   +  +Q   +  KPPSK
Subjt:  ESEGMIINFEQREPRLGFPGGGVSNDGEIQASKSSFGLLFLEGVDLKFNVASSMASGNEEAMKMGREEFFTQ---NATKPPSK

XP_022143010.1 auxin-responsive protein IAA16 [Momordica charantia]3.4e-0852.13Show/hide
Query:  MSSGVIESE------GMIINFEQREPRLGFP-GGGVSNDGEIQASKS-SFGLLFLEGVDLKFNVASSMASGNEEAMKMGREEFFTQNATKPPSK
        MS  V+ESE      G +INFEQ E RLG P GGG S+DGEI A KS S    FLE VDLK N++SSM +  EEA K+       + + KPPSK
Subjt:  MSSGVIESE------GMIINFEQREPRLGFP-GGGVSNDGEIQASKS-SFGLLFLEGVDLKFNVASSMASGNEEAMKMGREEFFTQNATKPPSK

XP_023521166.1 auxin-responsive protein IAA16-like isoform X1 [Cucurbita pepo subsp. pepo]1.0e-0444.71Show/hide
Query:  ESEGMIINFEQREPRLGFPGGGVSNDGEIQASKSSFGLL--FLEGVDLKFNVASSMASGNEEAMKMGREEFFTQ---NATKPPSK
        E   ++INFEQ E RLG PGG   + GE    KSS      F+E VDLK N++SSMA   EEA  +   +  +Q   +  KPPSK
Subjt:  ESEGMIINFEQREPRLGFPGGGVSNDGEIQASKSSFGLL--FLEGVDLKFNVASSMASGNEEAMKMGREEFFTQ---NATKPPSK

XP_023521167.1 auxin-responsive protein IAA16-like isoform X2 [Cucurbita pepo subsp. pepo]1.0e-0444.71Show/hide
Query:  ESEGMIINFEQREPRLGFPGGGVSNDGEIQASKSSFGLL--FLEGVDLKFNVASSMASGNEEAMKMGREEFFTQ---NATKPPSK
        E   ++INFEQ E RLG PGG   + GE    KSS      F+E VDLK N++SSMA   EEA  +   +  +Q   +  KPPSK
Subjt:  ESEGMIINFEQREPRLGFPGGGVSNDGEIQASKSSFGLL--FLEGVDLKFNVASSMASGNEEAMKMGREEFFTQ---NATKPPSK

TrEMBL top hitse value%identityAlignment
A0A0A0LG78 Auxin-responsive protein3.8e-0546.99Show/hide
Query:  ESEGMIINFEQREPRLGFPGGGVSNDGEIQASKSSFGLLFLEGVDLKFNVASSMASGNEEAMKMGREEFFTQ---NATKPPSK
        E   ++INFEQ E RLG PGG    DG    S S+    F+E VDLK N+ASSMAS  EEA  +   +  +Q   +  KPPSK
Subjt:  ESEGMIINFEQREPRLGFPGGGVSNDGEIQASKSSFGLLFLEGVDLKFNVASSMASGNEEAMKMGREEFFTQ---NATKPPSK

A0A1S3C1R1 Auxin-responsive protein8.4e-0544.58Show/hide
Query:  ESEGMIINFEQREPRLGFPGGGVSNDGEIQASKSSFGLLFLEGVDLKFNVASSMASGNEEAMKMGREEFFTQ---NATKPPSK
        E   ++INFEQ E RLG PGG     G+   S S+    F+E VDLK N+ASSMAS  EE   +   +  +Q   +  KPPSK
Subjt:  ESEGMIINFEQREPRLGFPGGGVSNDGEIQASKSSFGLLFLEGVDLKFNVASSMASGNEEAMKMGREEFFTQ---NATKPPSK

A0A1S3C1R6 Auxin-responsive protein8.4e-0544.58Show/hide
Query:  ESEGMIINFEQREPRLGFPGGGVSNDGEIQASKSSFGLLFLEGVDLKFNVASSMASGNEEAMKMGREEFFTQ---NATKPPSK
        E   ++INFEQ E RLG PGG     G+   S S+    F+E VDLK N+ASSMAS  EE   +   +  +Q   +  KPPSK
Subjt:  ESEGMIINFEQREPRLGFPGGGVSNDGEIQASKSSFGLLFLEGVDLKFNVASSMASGNEEAMKMGREEFFTQ---NATKPPSK

A0A5D3D4G0 Auxin-responsive protein IAA16 isoform X28.4e-0544.58Show/hide
Query:  ESEGMIINFEQREPRLGFPGGGVSNDGEIQASKSSFGLLFLEGVDLKFNVASSMASGNEEAMKMGREEFFTQ---NATKPPSK
        E   ++INFEQ E RLG PGG     G+   S S+    F+E VDLK N+ASSMAS  EE   +   +  +Q   +  KPPSK
Subjt:  ESEGMIINFEQREPRLGFPGGGVSNDGEIQASKSSFGLLFLEGVDLKFNVASSMASGNEEAMKMGREEFFTQ---NATKPPSK

A0A6J1CMJ1 Auxin-responsive protein1.6e-0852.13Show/hide
Query:  MSSGVIESE------GMIINFEQREPRLGFP-GGGVSNDGEIQASKS-SFGLLFLEGVDLKFNVASSMASGNEEAMKMGREEFFTQNATKPPSK
        MS  V+ESE      G +INFEQ E RLG P GGG S+DGEI A KS S    FLE VDLK N++SSM +  EEA K+       + + KPPSK
Subjt:  MSSGVIESE------GMIINFEQREPRLGFP-GGGVSNDGEIQASKS-SFGLLFLEGVDLKFNVASSMASGNEEAMKMGREEFFTQNATKPPSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAGCGGAGTGATAGAATCCGAGGGGATGATAATCAATTTCGAGCAGAGGGAGCCCCGGCTTGGATTTCCCGGCGGCGGCGTAAGCAACGACGGCGAAATCCAGGC
AAGCAAGAGTAGTTTCGGGCTGCTTTTTCTGGAAGGTGTGGATTTGAAGTTTAATGTTGCATCTTCAATGGCATCCGGAAACGAGGAGGCGATGAAGATGGGAAGAGAAG
AGTTTTTCACACAGAATGCTACAAAACCTCCATCGAAGCAAATTTCTCACTCTCTCTCAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCAGCGGAGTGATAGAATCCGAGGGGATGATAATCAATTTCGAGCAGAGGGAGCCCCGGCTTGGATTTCCCGGCGGCGGCGTAAGCAACGACGGCGAAATCCAGGC
AAGCAAGAGTAGTTTCGGGCTGCTTTTTCTGGAAGGTGTGGATTTGAAGTTTAATGTTGCATCTTCAATGGCATCCGGAAACGAGGAGGCGATGAAGATGGGAAGAGAAG
AGTTTTTCACACAGAATGCTACAAAACCTCCATCGAAGCAAATTTCTCACTCTCTCTCAAATTAA
Protein sequenceShow/hide protein sequence
MSSGVIESEGMIINFEQREPRLGFPGGGVSNDGEIQASKSSFGLLFLEGVDLKFNVASSMASGNEEAMKMGREEFFTQNATKPPSKQISHSLSN