; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G021130 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G021130
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRibonuclease T(2)
Genome locationchr02:27324758..27326858
RNA-Seq ExpressionLsi02G021130
SyntenyLsi02G021130
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0016020 - membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0033897 - ribonuclease T2 activity (molecular function)
InterPro domainsIPR001568 - Ribonuclease T2-like
IPR036430 - Ribonuclease T2-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651058.1 hypothetical protein Csa_002465 [Cucumis sativus]3.7e-2436Show/hide
Query:  CKIAPENRFGIHGVWPS-----------------IISLQDRMSQYWQDLENGNPMEAWAMKWAIHGTCSVTVFDEFKYFCLGLDTYGRHSMLSFLVHGGL
        C   P+ +F IHG+WPS                 +ISL+ +++  W DL+ GN  + W  +W  HG CS   F  F+YF + L+   +  +L+ L   GL
Subjt:  CKIAPENRFGIHGVWPS-----------------IISLQDRMSQYWQDLENGNPMEAWAMKWAIHGTCSVTVFDEFKYFCLGLDTYGRHSMLSFLVHGGL

Query:  VPSSSKNLPKTSFIKAIANMTSTKGGVICTAD-QRGRTQLQKAVLCYGKDGATLIDCPDNVSSSCPDSFFWLALG
         P +S+NL   + +  I   T    G+ C  + + G++QL + VLC  KDGATLIDCP  VS++C  SF W  +G
Subjt:  VPSSSKNLPKTSFIKAIANMTSTKGGVICTAD-QRGRTQLQKAVLCYGKDGATLIDCPDNVSSSCPDSFFWLALG

KGN45018.2 hypothetical protein Csa_016393 [Cucumis sativus]3.3e-6568.13Show/hide
Query:  NLGKSCKIAPENRFGIHGVWPS-------------------IISLQDRMSQYWQDLENGNPMEAWAMKWAIHGTCSVTVFDEFKYFCLGLDTYGRHSMLS
        NLG SCKI P+N FGIHGVWPS                   IISLQDRM+QYW+DLENGN +EAWA KW +HGTCS   FD+FKYFCLGLDTYGRH++ S
Subjt:  NLGKSCKIAPENRFGIHGVWPS-------------------IISLQDRMSQYWQDLENGNPMEAWAMKWAIHGTCSVTVFDEFKYFCLGLDTYGRHSMLS

Query:  FLVHGGLVPSSSKNLPKTSFIKAIANMTSTKGGVICTADQRGRTQLQKAVLCYGKDGATLIDCPDNVSSSCPDSFFWLALGD
        FL   GL PSSSK + K SFI AIAN T  KGGVIC  DQ  R QLQKAVLCY KDG TLIDCPDNVSSSCPD+F WLALGD
Subjt:  FLVHGGLVPSSSKNLPKTSFIKAIANMTSTKGGVICTADQRGRTQLQKAVLCYGKDGATLIDCPDNVSSSCPDSFFWLALGD

XP_004149779.2 ribonuclease MC [Cucumis sativus]3.3e-6568.13Show/hide
Query:  NLGKSCKIAPENRFGIHGVWPS-------------------IISLQDRMSQYWQDLENGNPMEAWAMKWAIHGTCSVTVFDEFKYFCLGLDTYGRHSMLS
        NLG SCKI P+N FGIHGVWPS                   IISLQDRM+QYW+DLENGN +EAWA KW +HGTCS   FD+FKYFCLGLDTYGRH++ S
Subjt:  NLGKSCKIAPENRFGIHGVWPS-------------------IISLQDRMSQYWQDLENGNPMEAWAMKWAIHGTCSVTVFDEFKYFCLGLDTYGRHSMLS

Query:  FLVHGGLVPSSSKNLPKTSFIKAIANMTSTKGGVICTADQRGRTQLQKAVLCYGKDGATLIDCPDNVSSSCPDSFFWLALGD
        FL   GL PSSSK + K SFI AIAN T  KGGVIC  DQ  R QLQKAVLCY KDG TLIDCPDNVSSSCPD+F WLALGD
Subjt:  FLVHGGLVPSSSKNLPKTSFIKAIANMTSTKGGVICTADQRGRTQLQKAVLCYGKDGATLIDCPDNVSSSCPDSFFWLALGD

XP_022143591.1 ribonuclease 1-like [Momordica charantia]1.6e-5677.61Show/hide
Query:  MSQYWQDLENGNPMEAWAMKWAIHGTCSVTVFDEFKYFCLGLDTYGRHSMLSFLVHGGLVPSSSKNLPKTSFIKAIANMTSTKGGVICTADQRGRTQLQK
        M +YWQDL +G+   AW  KWAIHGTCS TVFDEFKYFC+GLDTYGRH++LSFLVHGGLVPSS++   KTSFIKAIA++TS KGGVIC ADQRGRTQL+ 
Subjt:  MSQYWQDLENGNPMEAWAMKWAIHGTCSVTVFDEFKYFCLGLDTYGRHSMLSFLVHGGLVPSSSKNLPKTSFIKAIANMTSTKGGVICTADQRGRTQLQK

Query:  AVLCYGKDGATLIDCPDNVSSSCPDSFFWLALGD
         VLCY KDGAT+IDCPDNVSSSCPD F WLALGD
Subjt:  AVLCYGKDGATLIDCPDNVSSSCPDSFFWLALGD

XP_038899255.1 ribonuclease MC-like [Benincasa hispida]8.1e-8079.67Show/hide
Query:  NLGKSCKIAPENRFGIHGVWPS-------------------IISLQDRMSQYWQDLENGNPMEAWAMKWAIHGTCSVTVFDEFKYFCLGLDTYGRHSMLS
        NLGKSCKI PEN FGIHGVWPS                   I+SLQDRMSQYWQDLENGNP+EAWA KWAIHGTCS TVFDEFKYFCLGLDTYGRH+MLS
Subjt:  NLGKSCKIAPENRFGIHGVWPS-------------------IISLQDRMSQYWQDLENGNPMEAWAMKWAIHGTCSVTVFDEFKYFCLGLDTYGRHSMLS

Query:  FLVHGGLVPSSSKNLPKTSFIKAIANMTSTKGGVICTADQRGRTQLQKAVLCYGKDGATLIDCPDNVSSSCPDSFFWLALGD
        FLVHGGLVPSSSK L KTSF+KAIA+MTS KGGVIC  DQRGRTQLQKAVLCY KDG TLIDCPDNVSSSCPD+F WLALGD
Subjt:  FLVHGGLVPSSSKNLPKTSFIKAIANMTSTKGGVICTADQRGRTQLQKAVLCYGKDGATLIDCPDNVSSSCPDSFFWLALGD

TrEMBL top hitse value%identityAlignment
A0A0A0K4L1 Uncharacterized protein3.5e-5273.88Show/hide
Query:  MSQYWQDLENGNPMEAWAMKWAIHGTCSVTVFDEFKYFCLGLDTYGRHSMLSFLVHGGLVPSSSKNLPKTSFIKAIANMTSTKGGVICTADQRGRTQLQK
        M+QYW+DLENGN +EAWA KW +HGTCS   FD+FKYFCLGLDTYGRH++ SFL   GL PSSSK + K SFI AIAN T  KGGVIC  DQ  R QLQK
Subjt:  MSQYWQDLENGNPMEAWAMKWAIHGTCSVTVFDEFKYFCLGLDTYGRHSMLSFLVHGGLVPSSSKNLPKTSFIKAIANMTSTKGGVICTADQRGRTQLQK

Query:  AVLCYGKDGATLIDCPDNVSSSCPDSFFWLALGD
        AVLCY KDG TLIDCPDNVSSSCPD+F WLALGD
Subjt:  AVLCYGKDGATLIDCPDNVSSSCPDSFFWLALGD

A0A0A0LAN6 Ribonuclease T(2)5.2e-2436.26Show/hide
Query:  CKIAPENRFGIHGVWPS-----------------IISLQDRMSQYWQDLENGNPMEAWAMKWAIHGTCSVTVFDEFKYFCLGLDTYGRHSMLSFLVHGGL
        C   P+ +F IHG+WPS                 +ISL+ +++  W DL+ GN  + W  +W  HG CS   F  F+YF + L+   +  +L+ L   GL
Subjt:  CKIAPENRFGIHGVWPS-----------------IISLQDRMSQYWQDLENGNPMEAWAMKWAIHGTCSVTVFDEFKYFCLGLDTYGRHSMLSFLVHGGL

Query:  VPSSSKNLPKTSFIKAIANMTSTKGGVICTAD-QRGRTQLQKAVLCYGKDGATLIDCPDNVSSSCPDSFFW
         P +S+NL   + +  I   T    G+ C  + + G++QL + VLC  KDGATLIDCP  VS++C  SF W
Subjt:  VPSSSKNLPKTSFIKAIANMTSTKGGVICTAD-QRGRTQLQKAVLCYGKDGATLIDCPDNVSSSCPDSFFW

A0A6J1CQQ9 ribonuclease 1-like7.9e-5777.61Show/hide
Query:  MSQYWQDLENGNPMEAWAMKWAIHGTCSVTVFDEFKYFCLGLDTYGRHSMLSFLVHGGLVPSSSKNLPKTSFIKAIANMTSTKGGVICTADQRGRTQLQK
        M +YWQDL +G+   AW  KWAIHGTCS TVFDEFKYFC+GLDTYGRH++LSFLVHGGLVPSS++   KTSFIKAIA++TS KGGVIC ADQRGRTQL+ 
Subjt:  MSQYWQDLENGNPMEAWAMKWAIHGTCSVTVFDEFKYFCLGLDTYGRHSMLSFLVHGGLVPSSSKNLPKTSFIKAIANMTSTKGGVICTADQRGRTQLQK

Query:  AVLCYGKDGATLIDCPDNVSSSCPDSFFWLALGD
         VLCY KDGAT+IDCPDNVSSSCPD F WLALGD
Subjt:  AVLCYGKDGATLIDCPDNVSSSCPDSFFWLALGD

A0A6J1E0X1 ribonuclease MC-like8.6e-1932.95Show/hide
Query:  CKIAPENRFGIHGVWPS-------------------IISLQDRMSQYWQDLENGNPMEAWAMKWAIHGTCSVTVFDEFKYFCLGLDTYGRHSMLSFLVHG
        C   PE+R+ +HGVWPS                   I+++Q R+ Q W ++  G   + W+ +W  HGTCS    ++F YF  GL  Y  + + S L   
Subjt:  CKIAPENRFGIHGVWPS-------------------IISLQDRMSQYWQDLENGNPMEAWAMKWAIHGTCSVTVFDEFKYFCLGLDTYGRHSMLSFLVHG

Query:  GLVPSSSKNLPKTSFIKAIANMTSTKGGVICTADQR-GRTQLQKAVLCYGKDGATLIDCPDNVSSSCPDSFFW
        G+ P + +   KT    AI + T     + C  + R G  QL +  LC+ K+G  LIDCP NV  +C + F W
Subjt:  GLVPSSSKNLPKTSFIKAIANMTSTKGGVICTADQR-GRTQLQKAVLCYGKDGATLIDCPDNVSSSCPDSFFW

A0A6J1IAR7 Ribonuclease T(2)3.0e-1932.58Show/hide
Query:  GKSCKIAPENRFGIHGVWPS------------------IISLQDRMSQYWQDLENGNPMEAWAMKWAIHGTCSVTVFDEFKYF--CLGLDTYGRHSMLSF
        G  C   P   F IHG+WPS                  I +L+ +++ YW D+ NGN    W  +W  HGTCS   F++ +YF   L + T   + +L+ 
Subjt:  GKSCKIAPENRFGIHGVWPS------------------IISLQDRMSQYWQDLENGNPMEAWAMKWAIHGTCSVTVFDEFKYF--CLGLDTYGRHSMLSF

Query:  LVHGGLVPSSSKNLPKTSFIKAIANMTSTKGGVICTAD-QRGRTQLQKAVLCYGKDGATLIDCPDNVSSSCPDSFFWL
        L   GL P+++      +   AI   T  K G+ C  + Q  R QL + +LC+ K+G TLI+C      +CP  F WL
Subjt:  LVHGGLVPSSSKNLPKTSFIKAIANMTSTKGGVICTAD-QRGRTQLQKAVLCYGKDGATLIDCPDNVSSSCPDSFFWL

SwissProt top hitse value%identityAlignment
P23540 Ribonuclease MC8.9e-1327.22Show/hide
Query:  FNLGKSCKIAPENRFGIHGVWP-------------------SIISLQDRMSQYWQDLENGNPMEAWAMKWAIHGTCSVTVFDEFKYFCLGLDTYGRHSML
        F    SC  +    F IHG+WP                    I  LQ +++  W ++   N  + W+ +W  HGTCS + F++  YF L +D    + ++
Subjt:  FNLGKSCKIAPENRFGIHGVWP-------------------SIISLQDRMSQYWQDLENGNPMEAWAMKWAIHGTCSVTVFDEFKYFCLGLDTYGRHSML

Query:  SFLVHGGLVPSSSKNLPKTSFIKAIANMTSTK----GGVICTADQRGR-TQLQKAVLCYGKDGATLIDC
             G L P ++    +T   +AI      K     G+ C  D + + + L + V C+ +DG+TLIDC
Subjt:  SFLVHGGLVPSSSKNLPKTSFIKAIANMTSTK----GGVICTADQRGR-TQLQKAVLCYGKDGATLIDC

Q7M438 Ribonuclease DdI2.9e-1126.99Show/hide
Query:  FGIHGVWP-------------------SIISLQDRMSQYWQDLENGNPMEAWAMKWAIHGTCSVT--VFDEFKYFCLGLDTYGRHSMLSFLVHGGLVPSS
        F IHG+WP                   +I  L+D+++  W  L   N  + W  +++ HGTCS+T  + D   YF  G+  Y   ++ + L    + PS 
Subjt:  FGIHGVWP-------------------SIISLQDRMSQYWQDLENGNPMEAWAMKWAIHGTCSVT--VFDEFKYFCLGLDTYGRHSMLSFLVHGGLVPSS

Query:  SKNLPKTSFIKAIANMTSTKGGVICTADQRGRTQLQKAVLCYGKDGATLIDCPDNVSSSCPDS
        S          AI      K G+ C++      QL    +C  K+  +++DCPD    SC  S
Subjt:  SKNLPKTSFIKAIANMTSTKGGVICTADQRGRTQLQKAVLCYGKDGATLIDCPDNVSSSCPDS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGTTTGTCAAAACAAGATGCTTTCGATTATGTTCAACCTTGGAAAGAGCTGCAAAATAGCACCGGAGAATAGGTTTGGTATTCATGGTGTATGGCCTAGCATCAT
CTCATTGCAAGACCGGATGAGCCAATACTGGCAAGACCTGGAGAACGGGAACCCGATGGAAGCGTGGGCGATGAAGTGGGCAATCCACGGGACTTGCTCGGTGACCGTGT
TTGATGAGTTCAAGTATTTCTGCTTGGGTTTGGACACCTACGGCCGCCATTCTATGTTGTCATTTTTAGTCCATGGAGGTTTGGTTCCTAGCTCTAGCAAGAATCTACCC
AAGACTAGCTTTATCAAAGCCATCGCCAACATGACCTCGACGAAGGGCGGTGTTATCTGCACCGCTGATCAACGTGGCCGGACTCAACTCCAGAAGGCGGTTTTATGCTA
TGGCAAAGATGGTGCTACTCTCATCGATTGCCCAGATAATGTTAGTAGTTCTTGCCCTGATTCCTTCTTCTGGCTTGCCTTGGGTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGTTTGTCAAAACAAGATGCTTTCGATTATGTTCAACCTTGGAAAGAGCTGCAAAATAGCACCGGAGAATAGGTTTGGTATTCATGGTGTATGGCCTAGCATCAT
CTCATTGCAAGACCGGATGAGCCAATACTGGCAAGACCTGGAGAACGGGAACCCGATGGAAGCGTGGGCGATGAAGTGGGCAATCCACGGGACTTGCTCGGTGACCGTGT
TTGATGAGTTCAAGTATTTCTGCTTGGGTTTGGACACCTACGGCCGCCATTCTATGTTGTCATTTTTAGTCCATGGAGGTTTGGTTCCTAGCTCTAGCAAGAATCTACCC
AAGACTAGCTTTATCAAAGCCATCGCCAACATGACCTCGACGAAGGGCGGTGTTATCTGCACCGCTGATCAACGTGGCCGGACTCAACTCCAGAAGGCGGTTTTATGCTA
TGGCAAAGATGGTGCTACTCTCATCGATTGCCCAGATAATGTTAGTAGTTCTTGCCCTGATTCCTTCTTCTGGCTTGCCTTGGGTGATTGA
Protein sequenceShow/hide protein sequence
MEVCQNKMLSIMFNLGKSCKIAPENRFGIHGVWPSIISLQDRMSQYWQDLENGNPMEAWAMKWAIHGTCSVTVFDEFKYFCLGLDTYGRHSMLSFLVHGGLVPSSSKNLP
KTSFIKAIANMTSTKGGVICTADQRGRTQLQKAVLCYGKDGATLIDCPDNVSSSCPDSFFWLALGD