CuGenDBv2

Gene ID	Lsi02G021190
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Genomic DNA, chromosome 3, P1 clone: MJL12
Genome location	chr02:27359960..27366356
RNA-Seq Expression	Lsi02G021190
Synteny	Lsi02G021190
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6593013.1 hypothetical protein SDJN03_12489, partial [Cucurbita argyrosperma subsp. sororia]

2.7e-33

56.25

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Query:  EWFNNFFN------IIQFPLLEEVQEPEIKKEIDKEETKDHDHDHDIIENNGFIRNSSKEDKMGINYNKSFL-GCKVIE-DEEKMDLLWEKYEEKEMVVV
        EWFN  FN         FPL    QEP    EI+K+E K+ D + +    NG         +MG    KSFL GCK  E DE++MDLLWEKYEEK+    
Subjt:  EWFNNFFN------IIQFPLLEEVQEPEIKKEIDKEETKDHDHDHDIIENNGFIRNSSKEDKMGINYNKSFL-GCKVIE-DEEKMDLLWEKYEEKEMVVV

Query:  VEEEINNNNRCISKKKDLRSLVNQQKEIEEEEEEEEEEKA-NGKICCLQALKFSTSKMRLGMGKKSGLRKISKAFKGLKLLHQLTTNGKNKT
                 +  + KKDLRSLVN QKE+EEEEEEEEEE+   GKICCLQALK ST KMR GMGKKSGL+KISKAFKGLKLLHQL T  KNKT
Subjt:  VEEEINNNNRCISKKKDLRSLVNQQKEIEEEEEEEEEEKA-NGKICCLQALKFSTSKMRLGMGKKSGLRKISKAFKGLKLLHQLTTNGKNKT

KAG7025422.1 hypothetical protein SDJN02_11917, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.0e-33

55.67

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Query:  EWFNNFFN------IIQFPLLEEVQEPEIKKEIDKEETKDHDHDHDIIENNGFIRNSSKEDKMGINYNKSFL-GCKVIE-DEEKMDLLWEKYEEKEMVVV
        EWFN  FN         FPL    QEP    EI+K+E K+ D + +    NG         +MG    KSFL GCK  E DE++MDLLWEKYEEK+    
Subjt:  EWFNNFFN------IIQFPLLEEVQEPEIKKEIDKEETKDHDHDHDIIENNGFIRNSSKEDKMGINYNKSFL-GCKVIE-DEEKMDLLWEKYEEKEMVVV

Query:  VEEEINNNNRCISKKKDLRSLVNQQKEIEEEEEEEEEEK---ANGKICCLQALKFSTSKMRLGMGKKSGLRKISKAFKGLKLLHQLTTNGKNKT
                 +  + KKDLRSLVN QKE+EEEEEEEEEE+     GKICCLQALK ST KMR GMGKKSGL+KISKAFKGLKLLHQL T  KNKT
Subjt:  VEEEINNNNRCISKKKDLRSLVNQQKEIEEEEEEEEEEK---ANGKICCLQALKFSTSKMRLGMGKKSGLRKISKAFKGLKLLHQLTTNGKNKT

XP_016902223.1 PREDICTED: uncharacterized protein LOC107991592 [Cucumis melo]

4.4e-68

78.14

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Query:  LDEWFNNFFNIIQFPLLEEVQEPEIKKEIDKEETKDHDHDHDIIENNGFIRNSSKEDKMGINYN--KSFLGCKVIEDEEKMDLLWEKYEEKEMVVVVEEE
        LDEW+NNFFN IQFPLLEE QEPEIKKEI++EETKDH H +DIIE+    RNSSKE+K+G N +  KS + CKV EDEEKMDLLWEKYE++E+VVV+EEE
Subjt:  LDEWFNNFFNIIQFPLLEEVQEPEIKKEIDKEETKDHDHDHDIIENNGFIRNSSKEDKMGINYN--KSFLGCKVIEDEEKMDLLWEKYEEKEMVVVVEEE

Query:  INNNNRCISKKKDLRSLVNQQKEIEEEEEEEEEEKANGKICCLQALKFSTSKMRLGMGKKSGLRKISKAFKGLKLLHQLTTNG
        +N  NRCISKKKDLRSLVNQQKE+EE EEEEEEE+ NGKICCLQALKFS+SKMR GMGKK+GL+KISKAFKGLK LHQLTTNG
Subjt:  INNNNRCISKKKDLRSLVNQQKEIEEEEEEEEEEKANGKICCLQALKFSTSKMRLGMGKKSGLRKISKAFKGLKLLHQLTTNG

XP_023004158.1 uncharacterized protein LOC111497570 [Cucurbita maxima]

1.2e-33

56.54

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Query:  EWFNNFFN------IIQFPLLEEVQEPEIKKEIDKEETKDHDHDHDIIENNGFIRNSSKEDKMGINYNKSFL-GCKVIE-DEEKMDLLWEKYEEKEMVVV
        EWFN  FN         FPL    QEP    EI+K+E K+ DH+ +    NG         +MG    KSFL GCK  E DE+KMDLLWEKYEEK+    
Subjt:  EWFNNFFN------IIQFPLLEEVQEPEIKKEIDKEETKDHDHDHDIIENNGFIRNSSKEDKMGINYNKSFL-GCKVIE-DEEKMDLLWEKYEEKEMVVV

Query:  VEEEINNNNRCISKKKDLRSLVNQQKEIEEEEEEEEEEKANGKICCLQALKFSTSKMRLGMGKKSGLRKISKAFKGLKLLHQLTTNGKNKT
                 +  + KKDLRSLVN QKE+EEEEEEEEE    GKICCLQALK ST KMR GMGKKSGL+KISKAFKG KLLHQL T  KNKT
Subjt:  VEEEINNNNRCISKKKDLRSLVNQQKEIEEEEEEEEEEKANGKICCLQALKFSTSKMRLGMGKKSGLRKISKAFKGLKLLHQLTTNGKNKT

XP_023513792.1 uncharacterized protein LOC111778295 [Cucurbita pepo subsp. pepo]

1.4e-34

57.29

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Query:  EWFNNFFN------IIQFPLLEEVQEPEIKKEIDKEETKDHDHDHDIIENNGFIRNSSKEDKMGINYNKSFL-GCKVIE-DEEKMDLLWEKYEEKEMVVV
        EWFN  FN         FPL    QEP    EI+K+E K+ DH+ +    NG         +MG    KSFL GCK  E DE+KMDLLWEKYEEK+    
Subjt:  EWFNNFFN------IIQFPLLEEVQEPEIKKEIDKEETKDHDHDHDIIENNGFIRNSSKEDKMGINYNKSFL-GCKVIE-DEEKMDLLWEKYEEKEMVVV

Query:  VEEEINNNNRCISKKKDLRSLVNQQKEI-EEEEEEEEEEKANGKICCLQALKFSTSKMRLGMGKKSGLRKISKAFKGLKLLHQLTTNGKNKT
                 +  + KKDLRSLVN QKE+ EEEEEEEEEE+  GKICCLQALK ST KMR GMGKKSGL+KISKAFKGLKLLHQL T  KNKT
Subjt:  VEEEINNNNRCISKKKDLRSLVNQQKEI-EEEEEEEEEEKANGKICCLQALKFSTSKMRLGMGKKSGLRKISKAFKGLKLLHQLTTNGKNKT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K4L5 Genomic DNA, chromosome 3, P1 clone: MJL12

2.4e-72

78.95

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Query:  LDEWFNNFFNIIQFPLLEEVQEPEIKKEIDKEETKD-HDHDHDIIENNGFIRNSSKEDKMGINYN--KSFLGCKVIEDEEKMDLLWEKYEEKEMVVVVEE
        LDEW+NNFFNIIQFPLLEE QEPEIKKEI++EETKD HDH  DIIEN    RN SKE+K+G N +  KS + CKV EDEEKMDLLWEKYE+KE+VVV++E
Subjt:  LDEWFNNFFNIIQFPLLEEVQEPEIKKEIDKEETKD-HDHDHDIIENNGFIRNSSKEDKMGINYN--KSFLGCKVIEDEEKMDLLWEKYEEKEMVVVVEE

Query:  EINNNNRCISKKKDLRSLVNQQKEIEEEEEEEEEEKANGKICCLQALKFSTSKMRLGMGKKSGLRKISKAFKGLKLLHQLTTNGKNKTHS
        E+N  NRCISKKKDLRSLVNQQKE+EE E++EEEE+ NGKICCLQALKFSTSKMR GMGKK+GL+KISKAFKGLK LHQLTTNGKNKTHS
Subjt:  EINNNNRCISKKKDLRSLVNQQKEIEEEEEEEEEEKANGKICCLQALKFSTSKMRLGMGKKSGLRKISKAFKGLKLLHQLTTNGKNKTHS

A0A1S4E1X2 uncharacterized protein LOC107991592

2.1e-68

78.14

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Query:  LDEWFNNFFNIIQFPLLEEVQEPEIKKEIDKEETKDHDHDHDIIENNGFIRNSSKEDKMGINYN--KSFLGCKVIEDEEKMDLLWEKYEEKEMVVVVEEE
        LDEW+NNFFN IQFPLLEE QEPEIKKEI++EETKDH H +DIIE+    RNSSKE+K+G N +  KS + CKV EDEEKMDLLWEKYE++E+VVV+EEE
Subjt:  LDEWFNNFFNIIQFPLLEEVQEPEIKKEIDKEETKDHDHDHDIIENNGFIRNSSKEDKMGINYN--KSFLGCKVIEDEEKMDLLWEKYEEKEMVVVVEEE

Query:  INNNNRCISKKKDLRSLVNQQKEIEEEEEEEEEEKANGKICCLQALKFSTSKMRLGMGKKSGLRKISKAFKGLKLLHQLTTNG
        +N  NRCISKKKDLRSLVNQQKE+EE EEEEEEE+ NGKICCLQALKFS+SKMR GMGKK+GL+KISKAFKGLK LHQLTTNG
Subjt:  INNNNRCISKKKDLRSLVNQQKEIEEEEEEEEEEKANGKICCLQALKFSTSKMRLGMGKKSGLRKISKAFKGLKLLHQLTTNG

A0A6J1DVV3 uncharacterized protein LOC111023976

2.2e-20

44.12

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Query:  PKANQNQPLDEWFNNFFNIIQFPLLEEVQEPEIKKEIDKEETKDHDHDHDIIENNGFIRNSSKEDKMGINYNKSFLGCKVIED-------EEKMDLLWEK
        P   Q+     W N  F        E V+E E K +   E   + + D     ++   R    + +       + L  K  ED       +++MDLLWE 
Subjt:  PKANQNQPLDEWFNNFFNIIQFPLLEEVQEPEIKKEIDKEETKDHDHDHDIIENNGFIRNSSKEDKMGINYNKSFLGCKVIED-------EEKMDLLWEK

Query:  YEEKE--MVVVVEEEINNNNRCISKKKDLRSLVNQQKEIEEEEEEEEEEKANGKICCLQALKFSTSKMRLGMGKKSGLRKISKAFKGLKLLHQLTTNGKN
        YE KE  M  +V++    ++   SKKKDLRSLVN +KE EE EE EEEE   GKICCLQALKFST KMRLG+GK+SGL KISKAFKGLK LH L  +GK 
Subjt:  YEEKE--MVVVVEEEINNNNRCISKKKDLRSLVNQQKEIEEEEEEEEEEKANGKICCLQALKFSTSKMRLGMGKKSGLRKISKAFKGLKLLHQLTTNGKN

Query:  KTHS
          HS
Subjt:  KTHS

A0A6J1H9Q5 uncharacterized protein LOC111460896 isoform X1

3.2e-32

55.5

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Query:  EWFNNFFN------IIQFPLLEEVQEPEIKKEIDKEETKDHDHDHDIIENNGFIRNSSKEDKMGINYNKSFL-GCKVIE-DEEKMDLLWEKYEEKEMVVV
        EWFN  FN         FPL    QEP    EI+K+E K+ D + +    NG         +MG    KSFL GCK  E DE++MDLLWEKYEEK+    
Subjt:  EWFNNFFN------IIQFPLLEEVQEPEIKKEIDKEETKDHDHDHDIIENNGFIRNSSKEDKMGINYNKSFL-GCKVIE-DEEKMDLLWEKYEEKEMVVV

Query:  VEEEINNNNRCISKKKDLRSLVNQQKEIEEEEEEEEEEKANGKICCLQALKFSTSKMRLGMGKKSGLRKISKAFKGLKLLHQLTTNGKNKT
                 +  + KKDLRSLVN QKE+EEEEEEEEE +  GKICCLQALK ST KMR GMGKKSGL+KISKAFKGLKLLH L T  KNKT
Subjt:  VEEEINNNNRCISKKKDLRSLVNQQKEIEEEEEEEEEEKANGKICCLQALKFSTSKMRLGMGKKSGLRKISKAFKGLKLLHQLTTNGKNKT

A0A6J1KYN7 uncharacterized protein LOC111497570

5.9e-34

56.54

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Query:  EWFNNFFN------IIQFPLLEEVQEPEIKKEIDKEETKDHDHDHDIIENNGFIRNSSKEDKMGINYNKSFL-GCKVIE-DEEKMDLLWEKYEEKEMVVV
        EWFN  FN         FPL    QEP    EI+K+E K+ DH+ +    NG         +MG    KSFL GCK  E DE+KMDLLWEKYEEK+    
Subjt:  EWFNNFFN------IIQFPLLEEVQEPEIKKEIDKEETKDHDHDHDIIENNGFIRNSSKEDKMGINYNKSFL-GCKVIE-DEEKMDLLWEKYEEKEMVVV

Query:  VEEEINNNNRCISKKKDLRSLVNQQKEIEEEEEEEEEEKANGKICCLQALKFSTSKMRLGMGKKSGLRKISKAFKGLKLLHQLTTNGKNKT
                 +  + KKDLRSLVN QKE+EEEEEEEEE    GKICCLQALK ST KMR GMGKKSGL+KISKAFKG KLLHQL T  KNKT
Subjt:  VEEEINNNNRCISKKKDLRSLVNQQKEIEEEEEEEEEEKANGKICCLQALKFSTSKMRLGMGKKSGLRKISKAFKGLKLLHQLTTNGKNKT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G25130.1 unknown protein

1.8e-06

28.09

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Query:  IISLGGRNATMKTEEQKPKEQRPKANQNQPLD--------EWFNNFFNIIQFPLLEEVQEPEIKKEIDKEE------TKDHDHDHDIIENNGFIRNSSKE
        +I L     T K E+++ +EQ+ K   +  LD        E      +++     E    P++   + + E      TK+ + D+  +++ G +R   KE
Subjt:  IISLGGRNATMKTEEQKPKEQRPKANQNQPLD--------EWFNNFFNIIQFPLLEEVQEPEIKKEIDKEE------TKDHDHDHDIIENNGFIRNSSKE

Query:  DKMGINYNKSFLGCKVIEDE------EKMDLLWEKYEEKEMVVVVEEEINNNNRCISKKKDLRSLVNQQKEIEEE---EEEEEEEKANGKICCLQALKFS
         +      +  L CK+ E+       + MD LWE YE +      E++          KK  +S++ + K IE+E   EEE+++   + ++CCLQALKFS
Subjt:  DKMGINYNKSFLGCKVIEDE------EKMDLLWEKYEEKEMVVVVEEEINNNNRCISKKKDLRSLVNQQKEIEEE---EEEEEEEKANGKICCLQALKFS

Query:  TSKMRLGMGKKSGLRKISKAFKGLKLLHQLTTNGK
        T KM LG+ + + L K+SKAFKG+   +    + K
Subjt:  TSKMRLGMGKKSGLRKISKAFKGLKLLHQLTTNGK

Sequences

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CDS sequence

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CTTGGAATAGACTTGCTTCATAGATTGAATTGGAAACTTAGTCATTCTTTCTACATGAGCTTCCCGTTAACTAAGATTATAATATCTTTGGGTGGTCGCAATGCAACCAT
GAAAACGGAGGAGCAGAAGCCAAAAGAACAGAGACCAAAAGCCAATCAAAATCAACCTCTTGATGAGTGGTTCAACAATTTCTTCAACATCATCCAATTCCCACTACTTG
AAGAAGTTCAAGAACCTGAAATCAAGAAAGAAATCGACAAAGAAGAAACAAAAGATCATGATCATGATCATGATATTATAGAAAATAATGGGTTCATCAGAAATAGTTCA
AAAGAAGACAAAATGGGAATAAATTACAATAAGAGCTTTTTGGGATGCAAAGTAATTGAAGATGAAGAGAAAATGGATTTGCTTTGGGAAAAGTATGAGGAAAAGGAAAT
GGTAGTAGTTGTTGAAGAAGAGATCAATAACAACAACAGATGCATTTCAAAGAAGAAGGATTTGAGGAGTTTGGTGAATCAGCAAAAGGAAATTGAGGAAGAAGAAGAAG
AAGAAGAAGAAGAAAAAGCAAATGGGAAGATTTGTTGCTTACAAGCATTGAAATTTTCCACTTCAAAAATGAGATTAGGAATGGGAAAGAAAAGTGGTTTGAGGAAGATT
TCTAAAGCTTTCAAAGGCCTTAAATTGTTGCATCAACTCACTACTAATGGTAAGAACAAGACACATTCTTGA

mRNA sequence

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Protein sequence

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LGIDLLHRLNWKLSHSFYMSFPLTKIIISLGGRNATMKTEEQKPKEQRPKANQNQPLDEWFNNFFNIIQFPLLEEVQEPEIKKEIDKEETKDHDHDHDIIENNGFIRNSS
KEDKMGINYNKSFLGCKVIEDEEKMDLLWEKYEEKEMVVVVEEEINNNNRCISKKKDLRSLVNQQKEIEEEEEEEEEEKANGKICCLQALKFSTSKMRLGMGKKSGLRKI
SKAFKGLKLLHQLTTNGKNKTHS

Lsi02G021190 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome