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Lsi02G021320 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G021320
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontranscription initiation factor TFIID subunit 1
Genome locationchr02:27587922..27593728
RNA-Seq ExpressionLsi02G021320
SyntenyLsi02G021320
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0051123 - RNA polymerase II preinitiation complex assembly (biological process)
GO:0005669 - transcription factor TFIID complex (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
GO:0017025 - TBP-class protein binding (molecular function)
InterPro domainsIPR009067 - TAFII-230 TBP-binding
IPR036741 - TAFII-230 TBP-binding domain superfamily
IPR040240 - Transcription initiation factor TFIID subunit 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593022.1 Transcription initiation factor TFIID subunit 1, partial [Cucurbita argyrosperma subsp. sororia]1.1e-2989.47Show/hide
Query:  DEGKDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPD
        +  +DDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKI  +A+EPD
Subjt:  DEGKDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPD
KAG7025432.1 Transcription initiation factor TFIID subunit 1 [Cucurbita argyrosperma subsp. argyrosperma]1.1e-2989.47Show/hide
Query:  DEGKDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPD
        +  +DDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKI  +A+EPD
Subjt:  DEGKDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPD
XP_022959797.1 transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita moschata]1.1e-2989.47Show/hide
Query:  DEGKDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPD
        +  +DDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKI  +A+EPD
Subjt:  DEGKDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPD
XP_023513701.1 transcription initiation factor TFIID subunit 1 [Cucurbita pepo subsp. pepo]8.7e-3090.79Show/hide
Query:  DEGKDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPD
        +  +DDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKI  +AVEPD
Subjt:  DEGKDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPD
XP_038899368.1 transcription initiation factor TFIID subunit 1 isoform X2 [Benincasa hispida]1.9e-2989.47Show/hide
Query:  DEGKDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPD
        +  +DDDDYEDA GGNR LGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIR +AVEPD
Subjt:  DEGKDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPD
TrEMBL top hitse value%identityAlignment
A0A0A0KA05 Uncharacterized protein5.1e-2885.53Show/hide
Query:  DEGKDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPD
        +  +DDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALADKLGPTLTDIDLSTKS +I+ +AVEPD
Subjt:  DEGKDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPD
A0A1S3C886 transcription initiation factor TFIID subunit 1 isoform X12.3e-2886.84Show/hide
Query:  DEGKDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPD
        +  +DDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALADKLGPTLTDIDLSTKS KI+ +AVEPD
Subjt:  DEGKDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPD
A0A5A7SLH8 Transcription initiation factor TFIID subunit 1 isoform X12.3e-2886.84Show/hide
Query:  DEGKDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPD
        +  +DDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALADKLGPTLTDIDLSTKS KI+ +AVEPD
Subjt:  DEGKDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPD
A0A6J1H5J5 transcription initiation factor TFIID subunit 1 isoform X15.5e-3089.47Show/hide
Query:  DEGKDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPD
        +  +DDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKI  +A+EPD
Subjt:  DEGKDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPD
A0A6J1L0S9 transcription initiation factor TFIID subunit 1 isoform X13.6e-2989.47Show/hide
Query:  DEGKDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPD
        +  +DDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLG TLTDIDLSTKSPKI  +AVEPD
Subjt:  DEGKDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPD
SwissProt top hitse value%identityAlignment
Q67W65 Transcription initiation factor TFIID subunit 11.1e-1958.62Show/hide
Query:  DDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPDSSPSSCSDPSSDSSS
        DD+DY++ GGGN  LGFMFGNVD+SGDLDADYLDEDAKEHL ALADKLGP+L DIDL           ++P ++P+  S+   D+ +
Subjt:  DDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPDSSPSSCSDPSSDSSS
Q8LRK9 Transcription initiation factor TFIID subunit 11.4e-1766.67Show/hide
Query:  DDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPD
        DDD+YED   G   LGF+FGNVDNSGDLDADYLDEDAKEHL+ALADKLG +L DI+L  KS +   +  E D
Subjt:  DDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPD
Arabidopsis top hitse value%identityAlignment
AT1G32750.1 HAC13 protein (HAC13)9.6e-1966.67Show/hide
Query:  DDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPD
        DDD+YED   G   LGF+FGNVDNSGDLDADYLDEDAKEHL+ALADKLG +L DI+L  KS +   +  E D
Subjt:  DDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLGPTLTDIDLSTKSPKIRLEAVEPD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATTCCCCAGACGAAAGGGATGAAGGGCTTTCTTTTGGTCATGCCCTTGGTGCATATCGTTTTGGGATCCAATAGTGGGAAACATCTTGAAACTCCTCACCTTAT
GTCGGTTAGTAAGACTTTGGAGAAGCTTTTGAGCAACATCTTATGGTTATGGAAAGGGGTGGATGAGGGGAAGGATGACGACGACTATGAGGATGCTGGTGGCGGCAATC
GATTATTGGGGTTTATGTTCGGTAATGTGGATAATTCTGGTGATCTTGACGCCGATTATCTTGATGAGGATGCTAAGGAACATCTGGCTGCACTGGCTGATAAGTTGGGT
CCAACTTTGACAGATATTGATTTGTCAACGAAATCACCAAAAATACGATTGGAAGCTGTTGAACCAGATTCATCCCCAAGTTCTTGTTCAGATCCTTCCTCAGATTCTTC
CTCCTCCTTGTGCTCAGCTTCTATCTGTCTAAACGTTCATGGACGTGTGGAGGTTTCAGCAAGCATGTCTTCAGGGGTAGAGAATTGGTGTCGACCGGTGGGCTTGCTCT
TGTACTTTCCTCTTCCCATTGTCGATGAAAAAACAGAAGGGGAAAAG
mRNA sequenceShow/hide mRNA sequence
GAATTTCTTCCTTCCTTTATTTCTGTTCTCTCCCCAGTCTTCCTCCTCCGCCGCAGTGGCAACCGCTCGCCGGCAAGCCCCTACCATCATTCTCTCTATTCTCTTCCTCT
CTTCTGCAACCTCCGCCGCCACGCCTTCTGCTGCCGCTCTCTTCATCTCTCCGTCGCTTGCCGCCAGGGTCCGATTTACGAAGAGGAGTGGGTATTAGATGGGCGGCGAA
ACATATGGTGATTCCCCAGACGAAAGGGATGAAGGGCTTTCTTTTGGTCATGCCCTTGGTGCATATCGTTTTGGGATCCAATAGTGGGAAACATCTTGAAACTCCTCACC
TTATGTCGGTTAGTAAGACTTTGGAGAAGCTTTTGAGCAACATCTTATGGTTATGGAAAGGGGTGGATGAGGGGAAGGATGACGACGACTATGAGGATGCTGGTGGCGGC
AATCGATTATTGGGGTTTATGTTCGGTAATGTGGATAATTCTGGTGATCTTGACGCCGATTATCTTGATGAGGATGCTAAGGAACATCTGGCTGCACTGGCTGATAAGTT
GGGTCCAACTTTGACAGATATTGATTTGTCAACGAAATCACCAAAAATACGATTGGAAGCTGTTGAACCAGATTCATCCCCAAGTTCTTGTTCAGATCCTTCCTCAGATT
CTTCCTCCTCCTTGTGCTCAGCTTCTATCTGTCTAAACGTTCATGGACGTGTGGAGGTTTCAGCAAGCATGTCTTCAGGGGTAGAGAATTGGTGTCGACCGGTGGGCTTG
CTCTTGTACTTTCCTCTTCCCATTGTCGATGAAAAAACAGAAGGGGAAAAG
Protein sequenceShow/hide protein sequence
MVIPQTKGMKGFLLVMPLVHIVLGSNSGKHLETPHLMSVSKTLEKLLSNILWLWKGVDEGKDDDDYEDAGGGNRLLGFMFGNVDNSGDLDADYLDEDAKEHLAALADKLG
PTLTDIDLSTKSPKIRLEAVEPDSSPSSCSDPSSDSSSSLCSASICLNVHGRVEVSASMSSGVENWCRPVGLLLYFPLPIVDEKTEGEK