CuGenDBv2

Gene ID	Lsi02G021490
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	S4 RNA-binding domain-containing protein
Genome location	chr02:27861354..27868207
RNA-Seq Expression	Lsi02G021490
Synteny	Lsi02G021490
Gene Ontology terms	GO:0032259 - methylation (biological process) GO:0003723 - RNA binding (molecular function) GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	IPR002877 - Ribosomal RNA methyltransferase FtsJ domain IPR002942 - RNA-binding S4 domain IPR036986 - RNA-binding S4 domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004149317.1 uncharacterized protein LOC101212823 [Cucumis sativus]

2.3e-109

75.34

Show/hide

Query:  MSKCFLSRNNCARIFLLSPLTSSPIQSASPKAFSVAKSGKILSLNLKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEII
        M KC LSRNNCARIFL SPL+SSPI S SPKAFSVAKSGKI SL LKKKRRLDEVCVERYQQ+SRT+IQSWILQGKVLVDGKVISKAGTPV DKAKVEII
Subjt:  MSKCFLSRNNCARIFLLSPLTSSPIQSASPKAFSVAKSGKILSLNLKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEII

Query:  AEVPKYVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQ---------------------------------------
        AEVPKYVCRAGLKLEAAIEQL VDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQ                                       
Subjt:  AEVPKYVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQ---------------------------------------

Query:  ----VMPAVVNVMKEMSTIVTLVKPQFECRRSQ---------------VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYFDRTTVSTSNQE
            VMPAV+NVMKE STIVTLVKPQFECRRSQ               VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLV FDRTTVSTSNQE
Subjt:  ----VMPAVVNVMKEMSTIVTLVKPQFECRRSQ---------------VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYFDRTTVSTSNQE

XP_008458092.1 PREDICTED: putative rRNA methyltransferase YqxC isoform X1 [Cucumis melo]

9.7e-108

74.66

Show/hide

Query:  MSKCFLSRNNCARIFLLSPLTSSPIQSASPKAFSVAKSGKILSLNLKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEII
        MSKC LSRNNCARI L SP ++SPI S SPKAFSVAKSGKI SL LKKKRRLDEVCVERYQQ+SRT+IQSWILQGKVLVDGKVISKAGTPV DKAKVEII
Subjt:  MSKCFLSRNNCARIFLLSPLTSSPIQSASPKAFSVAKSGKILSLNLKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEII

Query:  AEVPKYVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQ---------------------------------------
        AEVPKYVCRAGLKLEAAIEQL VDV+GKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQ                                       
Subjt:  AEVPKYVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQ---------------------------------------

Query:  ----VMPAVVNVMKEMSTIVTLVKPQFECRRSQ---------------VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYFDRTTVSTSNQE
            VMPAVVNVMKE STIVTLVKPQFECRRSQ               VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLV FDRTTVSTSNQE
Subjt:  ----VMPAVVNVMKEMSTIVTLVKPQFECRRSQ---------------VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYFDRTTVSTSNQE

XP_022157877.1 uncharacterized protein LOC111024489 isoform X1 [Momordica charantia]

6.7e-109

82.07

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Query:  IMSKCFLSRNNCARIFLLSPLTSSPIQSASPKAFSVAKSGKILSLNLKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEI
        +MSK FL+RNNCARIFLLSPL+ SP  ++SPK+FSVAKSGKI  LNLKKKRRLDE+CVERYQQYSRTIIQSWILQGKVLVDG+V+SKAGTPVGDKAKVEI
Subjt:  IMSKCFLSRNNCARIFLLSPLTSSPIQSASPKAFSVAKSGKILSLNLKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEI

Query:  IAEVPKYVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQVMPAVVNVMKEMSTIVTLVKPQFECRRSQ---------
        IAE+PKYVCRAG KLEAAIEQ GVDV GKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQVMPAVV+VMKEMST+VTLVKPQFECRRSQ         
Subjt:  IAEVPKYVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQVMPAVVNVMKEMSTIVTLVKPQFECRRSQ---------

Query:  ------VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYFDRTTVSTS
              V+EKIIKGVENFGFCS+GWIESP+KGAEGNTEFL  F+RTT  +S
Subjt:  ------VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYFDRTTVSTS

XP_023004131.1 uncharacterized protein LOC111497556 [Cucurbita maxima]

3.4e-105

72.97

Show/hide

Query:  MSKCFLSRNNCARIFLLSPLTSSPIQSASPKAFSVAKSGKILSLNLKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEII
        MSKC LSRNN ARIFL+SP     I SASPKAFSVAKSGKI SLNLKKK+RLDE+CVERYQQYSRTIIQSWILQGKVLVDGKV+SKAGTPVGDKAKVEII
Subjt:  MSKCFLSRNNCARIFLLSPLTSSPIQSASPKAFSVAKSGKILSLNLKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEII

Query:  AEVPKYVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQ---------------------------------------
        AEVPKYVCRAG KLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQ                                       
Subjt:  AEVPKYVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQ---------------------------------------

Query:  ----VMPAVVNVMKEMSTIVTLVKPQFECRRSQ---------------VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYFDRTTVSTSNQE
            VMPAVVNVMKE STIVTLVKPQFECRRSQ               VLEKIIKGVE+FGFCSKGWIESPLKGAEGNTEFLV F RTT+S +NQ+
Subjt:  ----VMPAVVNVMKEMSTIVTLVKPQFECRRSQ---------------VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYFDRTTVSTSNQE

XP_038899562.1 putative rRNA methyltransferase YqxC [Benincasa hispida]

8.2e-115

78.38

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Query:  MSKCFLSRNNCARIFLLSPLTSSPIQSASPKAFSVAKSGKILSLNLKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEII
        MSKC LSRNNCARIFLLSPL+SSPIQSASPKAFSVAKSGKILSLNLKKK+RLDEVCVERYQQYSRT+IQSWILQGKVLVDGKVISKAGTPVGDKAKVEII
Subjt:  MSKCFLSRNNCARIFLLSPLTSSPIQSASPKAFSVAKSGKILSLNLKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEII

Query:  AEVPKYVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQ---------------------------------------
        AEVPKYVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQ                                       
Subjt:  AEVPKYVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQ---------------------------------------

Query:  ----VMPAVVNVMKEMSTIVTLVKPQFECRRSQ---------------VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYFDRTTVSTSNQE
            VMPAVVNVMKE STIVTLVKPQFECRRSQ               VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLV FDRTTVSTSNQE
Subjt:  ----VMPAVVNVMKEMSTIVTLVKPQFECRRSQ---------------VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYFDRTTVSTSNQE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KA33 S4 RNA-binding domain-containing protein

1.1e-109

75.34

Show/hide

Query:  MSKCFLSRNNCARIFLLSPLTSSPIQSASPKAFSVAKSGKILSLNLKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEII
        M KC LSRNNCARIFL SPL+SSPI S SPKAFSVAKSGKI SL LKKKRRLDEVCVERYQQ+SRT+IQSWILQGKVLVDGKVISKAGTPV DKAKVEII
Subjt:  MSKCFLSRNNCARIFLLSPLTSSPIQSASPKAFSVAKSGKILSLNLKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEII

Query:  AEVPKYVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQ---------------------------------------
        AEVPKYVCRAGLKLEAAIEQL VDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQ                                       
Subjt:  AEVPKYVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQ---------------------------------------

Query:  ----VMPAVVNVMKEMSTIVTLVKPQFECRRSQ---------------VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYFDRTTVSTSNQE
            VMPAV+NVMKE STIVTLVKPQFECRRSQ               VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLV FDRTTVSTSNQE
Subjt:  ----VMPAVVNVMKEMSTIVTLVKPQFECRRSQ---------------VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYFDRTTVSTSNQE

A0A1S3C7N4 putative rRNA methyltransferase YqxC isoform X1

4.7e-108

74.66

Show/hide

Query:  MSKCFLSRNNCARIFLLSPLTSSPIQSASPKAFSVAKSGKILSLNLKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEII
        MSKC LSRNNCARI L SP ++SPI S SPKAFSVAKSGKI SL LKKKRRLDEVCVERYQQ+SRT+IQSWILQGKVLVDGKVISKAGTPV DKAKVEII
Subjt:  MSKCFLSRNNCARIFLLSPLTSSPIQSASPKAFSVAKSGKILSLNLKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEII

Query:  AEVPKYVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQ---------------------------------------
        AEVPKYVCRAGLKLEAAIEQL VDV+GKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQ                                       
Subjt:  AEVPKYVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQ---------------------------------------

Query:  ----VMPAVVNVMKEMSTIVTLVKPQFECRRSQ---------------VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYFDRTTVSTSNQE
            VMPAVVNVMKE STIVTLVKPQFECRRSQ               VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLV FDRTTVSTSNQE
Subjt:  ----VMPAVVNVMKEMSTIVTLVKPQFECRRSQ---------------VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYFDRTTVSTSNQE

A0A5D3BCA3 Putative rRNA methyltransferase YqxC isoform X1

4.7e-108

74.66

Show/hide

Query:  MSKCFLSRNNCARIFLLSPLTSSPIQSASPKAFSVAKSGKILSLNLKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEII
        MSKC LSRNNCARI L SP ++SPI S SPKAFSVAKSGKI SL LKKKRRLDEVCVERYQQ+SRT+IQSWILQGKVLVDGKVISKAGTPV DKAKVEII
Subjt:  MSKCFLSRNNCARIFLLSPLTSSPIQSASPKAFSVAKSGKILSLNLKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEII

Query:  AEVPKYVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQ---------------------------------------
        AEVPKYVCRAGLKLEAAIEQL VDV+GKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQ                                       
Subjt:  AEVPKYVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQ---------------------------------------

Query:  ----VMPAVVNVMKEMSTIVTLVKPQFECRRSQ---------------VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYFDRTTVSTSNQE
            VMPAVVNVMKE STIVTLVKPQFECRRSQ               VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLV FDRTTVSTSNQE
Subjt:  ----VMPAVVNVMKEMSTIVTLVKPQFECRRSQ---------------VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYFDRTTVSTSNQE

A0A6J1DVP0 uncharacterized protein LOC111024489 isoform X1

3.3e-109

82.07

Show/hide

Query:  IMSKCFLSRNNCARIFLLSPLTSSPIQSASPKAFSVAKSGKILSLNLKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEI
        +MSK FL+RNNCARIFLLSPL+ SP  ++SPK+FSVAKSGKI  LNLKKKRRLDE+CVERYQQYSRTIIQSWILQGKVLVDG+V+SKAGTPVGDKAKVEI
Subjt:  IMSKCFLSRNNCARIFLLSPLTSSPIQSASPKAFSVAKSGKILSLNLKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEI

Query:  IAEVPKYVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQVMPAVVNVMKEMSTIVTLVKPQFECRRSQ---------
        IAE+PKYVCRAG KLEAAIEQ GVDV GKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQVMPAVV+VMKEMST+VTLVKPQFECRRSQ         
Subjt:  IAEVPKYVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQVMPAVVNVMKEMSTIVTLVKPQFECRRSQ---------

Query:  ------VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYFDRTTVSTS
              V+EKIIKGVENFGFCS+GWIESP+KGAEGNTEFL  F+RTT  +S
Subjt:  ------VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYFDRTTVSTS

A0A6J1KR87 uncharacterized protein LOC111497556

1.7e-105

72.97

Show/hide

Query:  MSKCFLSRNNCARIFLLSPLTSSPIQSASPKAFSVAKSGKILSLNLKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEII
        MSKC LSRNN ARIFL+SP     I SASPKAFSVAKSGKI SLNLKKK+RLDE+CVERYQQYSRTIIQSWILQGKVLVDGKV+SKAGTPVGDKAKVEII
Subjt:  MSKCFLSRNNCARIFLLSPLTSSPIQSASPKAFSVAKSGKILSLNLKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEII

Query:  AEVPKYVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQ---------------------------------------
        AEVPKYVCRAG KLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQ                                       
Subjt:  AEVPKYVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQ---------------------------------------

Query:  ----VMPAVVNVMKEMSTIVTLVKPQFECRRSQ---------------VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYFDRTTVSTSNQE
            VMPAVVNVMKE STIVTLVKPQFECRRSQ               VLEKIIKGVE+FGFCSKGWIESPLKGAEGNTEFLV F RTT+S +NQ+
Subjt:  ----VMPAVVNVMKEMSTIVTLVKPQFECRRSQ---------------VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYFDRTTVSTSNQE

SwissProt top hits

e value

%identity

Alignment

P19672 Putative rRNA methyltransferase YqxC

6.7e-19

Show/hide

Query:  KKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEIIAEVPKYVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQH
        KK RLD + VER    +R   +  I+ G V  +   + K G  +     + +     +YV R GLKLE A+++  V V  K+ +D G STGGFTDC LQ+
Subjt:  KKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEIIAEVPKYVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQH

Query:  GASFVYGVDVGYGQ----------------------------------------------VMPAVVNVMKEMSTIVTLVKPQFECRRSQVLEK-------
        GA   Y VDVGY Q                                              ++P +  ++   S  + LVKPQFE  R  V +K       
Subjt:  GASFVYGVDVGYGQ----------------------------------------------VMPAVVNVMKEMSTIVTLVKPQFECRRSQVLEK-------

Query:  ----IIKGVENF----GFCSKGWIESPLKGAEGNTEFLVY
            ++K + +F    G+  KG   SP+ G +GN EFL++
Subjt:  ----IIKGVENF----GFCSKGWIESPLKGAEGNTEFLVY

P9WJ62 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA

1.8e-16

28.74

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Query:  LKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEIIAEVPK-YVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCL
        + ++ R+D   V R    SR      I  GKV +DG    K  T V D   + ++ +  + +V R   KL  A+E   + V G+  LDAG STGGFT+ L
Subjt:  LKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEIIAEVPK-YVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCL

Query:  LQHGASFVYGVDVGYGQ---------------------------------------------VMPAVVNVMKEMSTIVTLVKPQFECRRSQV--------
        L  GA+ V   DVGYGQ                                             V+PA+V      + IV LVKPQFE  + QV        
Subjt:  LQHGASFVYGVDVGYGQ---------------------------------------------VMPAVVNVMKEMSTIVTLVKPQFECRRSQV--------

Query:  -------LEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYFDRTT
               +  + +  +  G+ S G   SPL G  GN E+ ++    T
Subjt:  -------LEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYFDRTT

P9WJ63 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA

1.8e-16

28.74

Show/hide

Query:  LKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEIIAEVPK-YVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCL
        + ++ R+D   V R    SR      I  GKV +DG    K  T V D   + ++ +  + +V R   KL  A+E   + V G+  LDAG STGGFT+ L
Subjt:  LKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEIIAEVPK-YVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCL

Query:  LQHGASFVYGVDVGYGQ---------------------------------------------VMPAVVNVMKEMSTIVTLVKPQFECRRSQV--------
        L  GA+ V   DVGYGQ                                             V+PA+V      + IV LVKPQFE  + QV        
Subjt:  LQHGASFVYGVDVGYGQ---------------------------------------------VMPAVVNVMKEMSTIVTLVKPQFECRRSQV--------

Query:  -------LEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYFDRTT
               +  + +  +  G+ S G   SPL G  GN E+ ++    T
Subjt:  -------LEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYFDRTT

Q06803 Hemolysin A

2.0e-23

32.35

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Query:  RLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEIIAEVPKYVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQHGAS
        RLDE         SR+  Q  IL G V V+G  ++     + D   +E++  + KYV RAG KLE A  + G+ V+ K+ LD G STGGFTDCLL+HGA 
Subjt:  RLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEIIAEVPKYVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQHGAS

Query:  FVYGVDVGYGQV-----------------------------MPAVV--------------NVMKEMSTI---VTLVKPQFECR---------------RS
         VY +DVG+ Q+                             +P+V+               + KE++ +   VTL+KPQFE                 R 
Subjt:  FVYGVDVGYGQV-----------------------------MPAVV--------------NVMKEMSTI---VTLVKPQFECR---------------RS

Query:  QVLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYF
        ++L   I  + + GF       SP+KGA+GN E+L +F
Subjt:  QVLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYF

Q8DEV0 Ribosomal large subunit pseudouridine synthase D

7.9e-04

37.04

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Query:  RRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEIIAEV
        +RLD+   E +  +SR+ ++ W+L GKV VDG V++K  T V     + ++AE+
Subjt:  RRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEIIAEV

Arabidopsis top hits

e value

%identity

Alignment

AT3G25470.1 bacterial hemolysin-related

2.2e-65

51.29

Show/hide

Query:  QSASPKAFSVAKSGKILSLNLKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEIIAEVPKYVCRAGLKLEAAIEQLGVDV
        + ++ + F+ A  GK       KK+RLDE CVER+ +YSRT+IQSWI+QGKVLVDG+ + KAG PV   A ++I AEVPK+VCR GLKLEAA+E+L VDV
Subjt:  QSASPKAFSVAKSGKILSLNLKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEIIAEVPKYVCRAGLKLEAAIEQLGVDV

Query:  DGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQ-------------------------------------------VMPAVVNVMKEMSTIVTLVKP
          KV LDAGLSTGGFTDCLL++GA+ VYGVDVGYGQ                                           VMPA++NVMKE +T+VTLVKP
Subjt:  DGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQ-------------------------------------------VMPAVVNVMKEMSTIVTLVKP

Query:  QFECRRSQ---------------VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYFDRTTVSTSNQE
        QFE RR Q               VLEKII GVE +GF +KG+IESP+KGA+GN EFL  F+R TV    +E
Subjt:  QFECRRSQ---------------VLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVYFDRTTVSTSNQE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGACTAGTCCCATCATGTCGAAGTGCTTCCTGAGTCGGAATAATTGTGCAAGGATTTTCCTCTTATCGCCACTAACTTCCTCTCCAATTCAATCGGCTTCTCCTAAAGC
CTTTTCCGTTGCCAAGTCGGGAAAGATTCTGTCACTGAACCTGAAAAAGAAGAGGAGATTGGACGAGGTATGTGTTGAAAGATACCAGCAATACAGCCGAACAATCATAC
AGTCGTGGATATTACAAGGTAAAGTATTGGTAGATGGCAAAGTAATCAGTAAAGCTGGAACACCCGTCGGCGATAAAGCTAAGGTTGAGATAATTGCCGAAGTTCCGAAA
TATGTATGTAGAGCAGGATTGAAGTTGGAAGCTGCCATTGAACAGTTGGGTGTTGATGTTGATGGTAAAGTTGCTCTGGATGCTGGGTTGTCCACTGGAGGATTTACTGA
CTGTTTGCTTCAGCATGGGGCTTCATTTGTCTATGGAGTTGATGTTGGATATGGGCAGGTTATGCCTGCTGTGGTCAATGTGATGAAGGAAATGTCAACGATAGTTACTT
TGGTGAAACCTCAATTTGAATGTCGCAGATCACAAGTTCTCGAGAAGATCATAAAGGGTGTAGAGAATTTTGGATTCTGCAGTAAAGGTTGGATTGAATCACCCTTGAAG
GGCGCTGAGGGTAATACAGAATTTTTGGTTTACTTTGACAGGACAACAGTTTCTACTTCAAATCAAGAATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MTSPIMSKCFLSRNNCARIFLLSPLTSSPIQSASPKAFSVAKSGKILSLNLKKKRRLDEVCVERYQQYSRTIIQSWILQGKVLVDGKVISKAGTPVGDKAKVEIIAEVPK
YVCRAGLKLEAAIEQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQVMPAVVNVMKEMSTIVTLVKPQFECRRSQVLEKIIKGVENFGFCSKGWIESPLK
GAEGNTEFLVYFDRTTVSTSNQE

Lsi02G021490 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome