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Lsi02G021570 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G021570
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionpleiotropic drug resistance protein 2-like
Genome locationchr02:27992787..27995308
RNA-Seq ExpressionLsi02G021570
SyntenyLsi02G021570
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0000166 - nucleotide binding (molecular function)
InterPro domainsIPR029481 - ABC-transporter, N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACA35283.1 pleiotrophic drug resistance protein [Cucumis sativus]5.6e-2458.06Show/hide
Query:  RRMIASVDDEAELLWAVIERL------RKGMLRQVVEN---------------------------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLS
        RR  ASVD+E EL WA I+RL      RKGMLR+++EN                           VVEEDNEKFLRR+R RIDR+GIEIPKIEVR E LS
Subjt:  RRMIASVDDEAELLWAVIERL------RKGMLRQVVEN---------------------------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLS

Query:  VEGDVYVGSRAQPTLLNVTLNTFE
        VEGDVYVGSRAQP LLN+TL  FE
Subjt:  VEGDVYVGSRAQPTLLNVTLNTFE

KAE8651079.1 hypothetical protein Csa_001391 [Cucumis sativus]5.6e-2458.06Show/hide
Query:  RRMIASVDDEAELLWAVIERL------RKGMLRQVVEN---------------------------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLS
        RR  ASVD+E EL WA I+RL      RKGMLR+++EN                           VVEEDNEKFLRR+R RIDR+GIEIPKIEVR E LS
Subjt:  RRMIASVDDEAELLWAVIERL------RKGMLRQVVEN---------------------------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLS

Query:  VEGDVYVGSRAQPTLLNVTLNTFE
        VEGDVYVGSRAQP LLN+TL  FE
Subjt:  VEGDVYVGSRAQPTLLNVTLNTFE

PKI49306.1 hypothetical protein CRG98_030234, partial [Punica granatum]1.9e-2462.62Show/hide
Query:  DDEAELLWAVIE------RLRKGMLRQVVEN-------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSVEGDVYVGSRAQPTLLNVTLNTFEVMN
        DDE EL WA IE      RLRKGMLRQV+++       VVEEDNEKFLRR+R R DR+G+EIPKIEVR E LSVEGDVY+GSRA PTL N T+NT E + 
Subjt:  DDEAELLWAVIE------RLRKGMLRQVVEN-------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSVEGDVYVGSRAQPTLLNVTLNTFEVMN

Query:  HGVNIAP
          + +AP
Subjt:  HGVNIAP

XP_004151528.2 pleiotropic drug resistance protein 2 [Cucumis sativus]2.5e-2460Show/hide
Query:  VDDEAELLWAVIERL------RKGMLRQVVEN---------------------------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSVEGDVY
        VDDE ELLWA IERL      RKGMLRQ VEN                           VVEEDNE+FLR IR R+DR+GIEIPKIE+R EKLSVEGDVY
Subjt:  VDDEAELLWAVIERL------RKGMLRQVVEN---------------------------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSVEGDVY

Query:  VGSRAQPTLLNVTLNTFEVM
        VGSRA P L+NV LNTFEV+
Subjt:  VGSRAQPTLLNVTLNTFEVM

XP_031737939.1 LOW QUALITY PROTEIN: ABC transporter G family member 34 [Cucumis sativus]5.6e-2458.06Show/hide
Query:  RRMIASVDDEAELLWAVIERL------RKGMLRQVVEN---------------------------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLS
        RR  ASVD+E EL WA I+RL      RKGMLR+++EN                           VVEEDNEKFLRR+R RIDR+GIEIPKIEVR E LS
Subjt:  RRMIASVDDEAELLWAVIERL------RKGMLRQVVEN---------------------------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLS

Query:  VEGDVYVGSRAQPTLLNVTLNTFE
        VEGDVYVGSRAQP LLN+TL  FE
Subjt:  VEGDVYVGSRAQPTLLNVTLNTFE

TrEMBL top hitse value%identityAlignment
A0A0A0LEI8 ABC_trans_N domain-containing protein3.5e-2460.17Show/hide
Query:  VDDEAELLWAVIERL------RKGMLRQVVEN---------------------------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSVEGDVY
        VDDE ELLWA IERL      RKGMLRQ VEN                           VVEEDNE+FLR IR R+DR+GIEIPKIE+R EKLSVEGDVY
Subjt:  VDDEAELLWAVIERL------RKGMLRQVVEN---------------------------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSVEGDVY

Query:  VGSRAQPTLLNVTLNTFE
        VGSRA P L+NV LNTFE
Subjt:  VGSRAQPTLLNVTLNTFE

A0A0A0LGJ3 ABC transporter domain-containing protein2.2e-2650Show/hide
Query:  SSTENLKIATPKQLLRVVFHLRCSDHWIFTFAAKFECSTELRRRMIASVDDEAELLWAVIERL------RKGMLRQVVEN--------------------
        SS+ +L++ +P Q L ++F  +C       F A      E  RR  ASVD+E EL WA I+RL      RKGMLR+++EN                    
Subjt:  SSTENLKIATPKQLLRVVFHLRCSDHWIFTFAAKFECSTELRRRMIASVDDEAELLWAVIERL------RKGMLRQVVEN--------------------

Query:  -------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSVEGDVYVGSRAQPTLLNVTLNTFE
               VVEEDNEKFLRR+R RIDR+GIEIPKIEVR E LSVEGDVYVGSRAQP LLN+TL  FE
Subjt:  -------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSVEGDVYVGSRAQPTLLNVTLNTFE

A0A2I0J0T3 Uncharacterized protein (Fragment)9.3e-2562.62Show/hide
Query:  DDEAELLWAVIE------RLRKGMLRQVVEN-------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSVEGDVYVGSRAQPTLLNVTLNTFEVMN
        DDE EL WA IE      RLRKGMLRQV+++       VVEEDNEKFLRR+R R DR+G+EIPKIEVR E LSVEGDVY+GSRA PTL N T+NT E + 
Subjt:  DDEAELLWAVIE------RLRKGMLRQVVEN-------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSVEGDVYVGSRAQPTLLNVTLNTFEVMN

Query:  HGVNIAP
          + +AP
Subjt:  HGVNIAP

A0A6P6AQP0 pleiotropic drug resistance protein 2-like6.0e-2457.48Show/hide
Query:  DDEAELLWAVIE------RLRKGMLRQVVEN---------------------------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSVEGDVYV
        DDE EL WA IE      RLRKGMLRQV++N                           VVEEDNEKFLRR+R R DR+GIEIPKIEVR E L+VEGDVYV
Subjt:  DDEAELLWAVIE------RLRKGMLRQVVEN---------------------------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSVEGDVYV

Query:  GSRAQPTLLNVTLNTFEVMNHGVNIAP
        GSRA PTLLNVTLNT E +   V +AP
Subjt:  GSRAQPTLLNVTLNTFEVMNHGVNIAP

B3U2B8 Pleiotrophic drug resistance protein2.7e-2458.06Show/hide
Query:  RRMIASVDDEAELLWAVIERL------RKGMLRQVVEN---------------------------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLS
        RR  ASVD+E EL WA I+RL      RKGMLR+++EN                           VVEEDNEKFLRR+R RIDR+GIEIPKIEVR E LS
Subjt:  RRMIASVDDEAELLWAVIERL------RKGMLRQVVEN---------------------------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLS

Query:  VEGDVYVGSRAQPTLLNVTLNTFE
        VEGDVYVGSRAQP LLN+TL  FE
Subjt:  VEGDVYVGSRAQPTLLNVTLNTFE

SwissProt top hitse value%identityAlignment
Q2PCF1 Pleiotropic drug resistance protein 23.5e-2146.46Show/hide
Query:  DDEAELLWAVIE------RLRKGMLRQVVEN---------------------------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSVEGDVYV
        ++E EL WA I+      RLRKGM+++V+ N                           VVE+DNE+FLRR+R R DR+GIEIPKIEVR + LSV GD YV
Subjt:  DDEAELLWAVIE------RLRKGMLRQVVEN---------------------------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSVEGDVYV

Query:  GSRAQPTLLNVTLNTFEVMNHGVNIAP
        G+RA PTLLN TLNT E +   ++++P
Subjt:  GSRAQPTLLNVTLNTFEVMNHGVNIAP

Q7PC84 ABC transporter G family member 391.3e-1850.43Show/hide
Query:  DDEAELLWAVIE------RLRKGMLRQVVEN---------------------------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSVEGDVYV
        +D+ EL WA IE      RLRKGML Q   N                            VEEDNEKFLR +R R DR+GIE+PKIEVR E +SVEGDV  
Subjt:  DDEAELLWAVIE------RLRKGMLRQVVEN---------------------------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSVEGDVYV

Query:  GSRAQPTLLNVTLNTFE
         SRA PTL NVTLNT E
Subjt:  GSRAQPTLLNVTLNTFE

Q7PC87 ABC transporter G family member 348.7e-2051.28Show/hide
Query:  DDEAELLWAVIE------RLRKGMLRQVVEN---------------------------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSVEGDVYV
        +D+ EL WA +E      RLRKGML Q + N                            VEEDNEKFLRR+R R DR+GIE+PKIEVR E LSVEGDV  
Subjt:  DDEAELLWAVIE------RLRKGMLRQVVEN---------------------------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSVEGDVYV

Query:  GSRAQPTLLNVTLNTFE
         SRA PTL NVTLNT E
Subjt:  GSRAQPTLLNVTLNTFE

Q8GU86 ABC transporter G family member 436.9e-1740.8Show/hide
Query:  DDEAELLWAVIE------RLRKGMLRQVVE-----------------------------------NVVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKL
        DDE  L WA +E      R+R+G+LR+ V+                                     VE+DNE+FLRR R R+D++GIE+PKIEVR + L
Subjt:  DDEAELLWAVIE------RLRKGMLRQVVE-----------------------------------NVVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKL

Query:  SVEGDVYVGSRAQPTLLNVTLNTFE
         +E DV+VG RA PTLLN T+NT E
Subjt:  SVEGDVYVGSRAQPTLLNVTLNTFE

Q949G3 Pleiotropic drug resistance protein 16.4e-1538.35Show/hide
Query:  ELRRRMIASVDDEAELLWAVIE------RLRKGML--------------------RQVVENVV---EEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSV
        E+  R     DDE  L WA +E      RLRKG+L                    + ++E +V   +EDNEKFL +++ RIDR+GI+ P IEVR E L++
Subjt:  ELRRRMIASVDDEAELLWAVIE------RLRKGML--------------------RQVVENVV---EEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSV

Query:  EGDVYVGSRAQPTLLNVTLNTFEVMNHGVNIAP
        + D YVGSRA PT  N   N  E +   ++I P
Subjt:  EGDVYVGSRAQPTLLNVTLNTFEVMNHGVNIAP

Arabidopsis top hitse value%identityAlignment
AT1G59870.1 ABC-2 and Plant PDR ABC-type transporter family protein1.6e-1336.72Show/hide
Query:  RRMIASVDDEAELLWAVIE------RLRKGMLRQVVEN-------------------------------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRL
        RR  +  DDE  L WA IE      RLR  ++  VVE+                               V E+DNE+ L ++R RIDR+GI++P +EVR 
Subjt:  RRMIASVDDEAELLWAVIE------RLRKGMLRQVVEN-------------------------------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRL

Query:  EKLSVEGDVYVGSRAQPTLLNVTLNTFE
        E L+++ D Y G+R+ PTLLNV  N  E
Subjt:  EKLSVEGDVYVGSRAQPTLLNVTLNTFE

AT1G66950.1 pleiotropic drug resistance 118.9e-2050.43Show/hide
Query:  DDEAELLWAVIE------RLRKGMLRQVVEN---------------------------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSVEGDVYV
        +D+ EL WA IE      RLRKGML Q   N                            VEEDNEKFLR +R R DR+GIE+PKIEVR E +SVEGDV  
Subjt:  DDEAELLWAVIE------RLRKGMLRQVVEN---------------------------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSVEGDVYV

Query:  GSRAQPTLLNVTLNTFE
         SRA PTL NVTLNT E
Subjt:  GSRAQPTLLNVTLNTFE

AT2G36380.1 pleiotropic drug resistance 66.2e-2151.28Show/hide
Query:  DDEAELLWAVIE------RLRKGMLRQVVEN---------------------------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSVEGDVYV
        +D+ EL WA +E      RLRKGML Q + N                            VEEDNEKFLRR+R R DR+GIE+PKIEVR E LSVEGDV  
Subjt:  DDEAELLWAVIE------RLRKGMLRQVVEN---------------------------VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSVEGDVYV

Query:  GSRAQPTLLNVTLNTFE
         SRA PTL NVTLNT E
Subjt:  GSRAQPTLLNVTLNTFE

AT3G16340.1 pleiotropic drug resistance 18.1e-1354.24Show/hide
Query:  VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSVEGDVYVGSRAQPTLLNVTLNTFE
        V EEDNEKFL++ R RIDR+ I++P +EVR EK+++E + ++G RA PTL N  LN  E
Subjt:  VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSVEGDVYVGSRAQPTLLNVTLNTFE

AT3G16340.2 pleiotropic drug resistance 18.1e-1354.24Show/hide
Query:  VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSVEGDVYVGSRAQPTLLNVTLNTFE
        V EEDNEKFL++ R RIDR+ I++P +EVR EK+++E + ++G RA PTL N  LN  E
Subjt:  VVEEDNEKFLRRIRGRIDRMGIEIPKIEVRLEKLSVEGDVYVGSRAQPTLLNVTLNTFE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTACAATGGACTCTTCATCTCCTTCGTTTCTCATCCACAGAGAATCTCAAAATTGCAACTCCAAAACAGCTTCTCCGTGTCGTCTTCCATTTAAGGTGCTCAGACCA
CTGGATTTTCACTTTCGCCGCTAAGTTCGAGTGTTCGACGGAGTTACGACGGCGAATGATTGCTTCAGTGGACGACGAGGCAGAGCTCCTGTGGGCGGTGATTGAGCGGC
TGCGGAAGGGAATGCTCCGGCAAGTGGTGGAGAATGTTGTTGAAGAAGATAATGAGAAATTTCTGAGACGGATCAGAGGCAGAATCGATCGAATGGGGATTGAAATTCCA
AAAATCGAAGTTCGTTTGGAGAAATTGTCAGTTGAAGGAGATGTTTACGTCGGGAGTAGAGCTCAGCCGACTTTGCTCAACGTCACACTCAACACTTTTGAGGTCATGAA
TCATGGTGTTAATATTGCACCTTATGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTACAATGGACTCTTCATCTCCTTCGTTTCTCATCCACAGAGAATCTCAAAATTGCAACTCCAAAACAGCTTCTCCGTGTCGTCTTCCATTTAAGGTGCTCAGACCA
CTGGATTTTCACTTTCGCCGCTAAGTTCGAGTGTTCGACGGAGTTACGACGGCGAATGATTGCTTCAGTGGACGACGAGGCAGAGCTCCTGTGGGCGGTGATTGAGCGGC
TGCGGAAGGGAATGCTCCGGCAAGTGGTGGAGAATGTTGTTGAAGAAGATAATGAGAAATTTCTGAGACGGATCAGAGGCAGAATCGATCGAATGGGGATTGAAATTCCA
AAAATCGAAGTTCGTTTGGAGAAATTGTCAGTTGAAGGAGATGTTTACGTCGGGAGTAGAGCTCAGCCGACTTTGCTCAACGTCACACTCAACACTTTTGAGGTCATGAA
TCATGGTGTTAATATTGCACCTTATGTTTAG
Protein sequenceShow/hide protein sequence
MLQWTLHLLRFSSTENLKIATPKQLLRVVFHLRCSDHWIFTFAAKFECSTELRRRMIASVDDEAELLWAVIERLRKGMLRQVVENVVEEDNEKFLRRIRGRIDRMGIEIP
KIEVRLEKLSVEGDVYVGSRAQPTLLNVTLNTFEVMNHGVNIAPYV