| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0059617.1 DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo var. makuwa] | 7.1e-93 | 75.59 | Show/hide |
Query: MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPK
MVLSEEEITRLFRIRKTVFQML+DRGYFVGDFEIDMTREQFK KYGE+MKREDIVINK+KRNDSSDQ IY+FFPEE K
Subjt: MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPK
Query: VGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEK
VG+K +KTYT RMKSENVFRAILVVQQNLTPFAR CM+EA+SK FHLEVFQ EAELLVNIKDHVLVPEHQLL NEEK
Subjt: VGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEK
Query: KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
|
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| XP_004148944.1 DNA-directed RNA polymerases II and IV subunit 5A [Cucumis sativus] | 1.4e-93 | 75.98 | Show/hide |
Query: MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPK
MVLSEEEITRLFRIRKTVFQML+DRGYFVGDFEIDMTREQFK KYGE+MKREDIVINK+KRNDSSDQ IY+FFPEE K
Subjt: MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPK
Query: VGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEK
VG+K +KTYT RMKSENVFRAILVVQQNLTPFAR CM+EA+SK FHLEVFQ EAELLVNIKDHVLVPEHQLLNNEEK
Subjt: VGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEK
Query: KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
|
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| XP_008451219.1 PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo] | 7.1e-93 | 75.59 | Show/hide |
Query: MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPK
MVLSEEEITRLFRIRKTVFQML+DRGYFVGDFEIDMTREQFK KYGE+MKREDIVINK+KRNDSSDQ IY+FFPEE K
Subjt: MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPK
Query: VGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEK
VG+K +KTYT RMKSENVFRAILVVQQNLTPFAR CM+EA+SK FHLEVFQ EAELLVNIKDHVLVPEHQLL NEEK
Subjt: VGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEK
Query: KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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| XP_022959553.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] | 1.2e-92 | 75.98 | Show/hide |
Query: MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPK
MVL+EEEITRLFR+RKTV QMLKDRGYFVGDFE+DM+REQFK+KYGESMKREDIVINKAKRNDSSDQ IYIFFPEEPK
Subjt: MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPK
Query: VGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEK
VGVKT+KTYT RMKSENVFRAILVVQQNLTPFARTC++E S+K FHLEVFQ EAELLVNIKDHVLVPEHQLL+NEEK
Subjt: VGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEK
Query: KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
|
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| XP_022991826.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] | 9.2e-93 | 76.38 | Show/hide |
Query: MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPK
MVLSEEEITRLFRIRKTV QMLKDRGYFVGDFEIDM+REQFKHKYGESMKREDIVINKAKRNDSSDQ IY+FFPEE K
Subjt: MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPK
Query: VGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEK
VGVKT+KTYT RMK+ENVFRAILVVQQNLTPFARTC++E SSK FHLEVFQ EAELLVN+KDHVLVPEHQLL NEEK
Subjt: VGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEK
Query: KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A0A0K8L9 Uncharacterized protein | 6.9e-94 | 75.98 | Show/hide |
Query: MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPK
MVLSEEEITRLFRIRKTVFQML+DRGYFVGDFEIDMTREQFK KYGE+MKREDIVINK+KRNDSSDQ IY+FFPEE K
Subjt: MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPK
Query: VGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEK
VG+K +KTYT RMKSENVFRAILVVQQNLTPFAR CM+EA+SK FHLEVFQ EAELLVNIKDHVLVPEHQLLNNEEK
Subjt: VGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEK
Query: KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
|
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| A0A1S3BS23 DNA-directed RNA polymerases II and IV subunit 5A | 3.4e-93 | 75.59 | Show/hide |
Query: MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPK
MVLSEEEITRLFRIRKTVFQML+DRGYFVGDFEIDMTREQFK KYGE+MKREDIVINK+KRNDSSDQ IY+FFPEE K
Subjt: MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPK
Query: VGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEK
VG+K +KTYT RMKSENVFRAILVVQQNLTPFAR CM+EA+SK FHLEVFQ EAELLVNIKDHVLVPEHQLL NEEK
Subjt: VGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEK
Query: KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
|
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| A0A5D3C9X8 DNA-directed RNA polymerases II and IV subunit 5A | 3.4e-93 | 75.59 | Show/hide |
Query: MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPK
MVLSEEEITRLFRIRKTVFQML+DRGYFVGDFEIDMTREQFK KYGE+MKREDIVINK+KRNDSSDQ IY+FFPEE K
Subjt: MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPK
Query: VGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEK
VG+K +KTYT RMKSENVFRAILVVQQNLTPFAR CM+EA+SK FHLEVFQ EAELLVNIKDHVLVPEHQLL NEEK
Subjt: VGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEK
Query: KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
|
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| A0A6J1JRV4 DNA-directed RNA polymerases II and IV subunit 5A-like | 4.5e-93 | 76.38 | Show/hide |
Query: MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPK
MVLSEEEITRLFRIRKTV QMLKDRGYFVGDFEIDM+REQFKHKYGESMKREDIVINKAKRNDSSDQ IY+FFPEE K
Subjt: MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPK
Query: VGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEK
VGVKT+KTYT RMK+ENVFRAILVVQQNLTPFARTC++E SSK FHLEVFQ EAELLVN+KDHVLVPEHQLL NEEK
Subjt: VGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEK
Query: KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
|
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| A0A6J1KT45 DNA-directed RNA polymerases II and IV subunit 5A-like | 5.8e-93 | 75.98 | Show/hide |
Query: MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPK
MVL+EEEITRLFR+RKTV QMLKDRGYFVGDFE+DM+REQFK+KYGESMKREDIVINKAKRNDSSDQ IYIFFPEEPK
Subjt: MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPK
Query: VGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEK
VGVKT+KTYT RMKSENVFRAILVVQQNLTPFARTC++E S+K FHLEVFQ EAELLVNIKDHVLVPEHQLL+NEEK
Subjt: VGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEK
Query: KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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|
| SwissProt top hits | e value | %identity | Alignment |
|---|
| B0BNE2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 3.8e-49 | 44.49 | Show/hide |
Query: EEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGES-----MKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEP
EEE RL++IRKT+ Q+ DRGY V E+D T E+FK ++G+ +R D+ + A +D +DQ+ ++FFPEEP
Subjt: EEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGES-----MKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEP
Query: KVGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEE
KVG+KTIK Y QRM+ EN+ RA++VVQQ +TP A+ + + + K + LE F + ELL+NI +H LVPEH ++ EE
Subjt: KVGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEE
Query: KKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYV
LL RY ++E+QLPRIQ DPVARY+G+KRGQVVKIIRPSETAGRY+TYR V
Subjt: KKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYV
|
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| O81098 DNA-directed RNA polymerases II and IV subunit 5A | 4.9e-81 | 65.22 | Show/hide |
Query: VLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPKV
+L+EEE+ RL+RI+KT+ QML+DRGYF+ D E+ MT++QF K+G++MKRED+V KAKRND+SDQL YIFFP+E KV
Subjt: VLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPKV
Query: GVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEKK
GVKT+K YT RMKSENVFRAILVVQQNLTPFARTC++E SSK FHLEVFQ EAE+LVNIK+HVLVPEHQ+L EEKK
Subjt: GVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEKK
Query: TLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
TLLERYTVKETQLPRIQVTDP+ARY+GLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: TLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
|
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| P19388 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 1.9e-48 | 44.49 | Show/hide |
Query: EEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGES-----MKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEP
EEE RL++IRKT+ Q+ DRGY V E+D T E+FK + G+ +R D+ + A +D +DQ+ ++FFPEEP
Subjt: EEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGES-----MKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEP
Query: KVGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEE
KVG+KTIK Y QRM+ EN+ RA++VVQQ +TP A+ + + + K + LE F + ELL+NI +H LVPEH ++ EE
Subjt: KVGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEE
Query: KKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYV
LL RY ++E QLPRIQ DPVARY+G+KRGQVVKIIRPSETAGRY+TYR V
Subjt: KKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYV
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| Q5R587 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 1.1e-48 | 44.09 | Show/hide |
Query: EEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGES-----MKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEP
EEE RL++IRKT+ Q+ DRGY V E+D T E+F+ ++G+ +R D+ + A +D +DQ+ ++FFPEEP
Subjt: EEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGES-----MKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEP
Query: KVGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEE
KVG+KTIK Y QRM+ EN+ RA++VVQQ +TP A+ + + + K + LE F + ELL+NI +H LVPEH ++ EE
Subjt: KVGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEE
Query: KKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYV
LL RY ++E QLPRIQ DPVARY+G+KRGQVVKIIRPSETAGRY+TYR V
Subjt: KKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYV
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| Q80UW8 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 3.8e-49 | 44.49 | Show/hide |
Query: EEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGES-----MKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEP
EEE RL++IRKT+ Q+ DRGY V E+D T E+FK ++G+ +R D+ + A +D +DQ+ ++FFPEEP
Subjt: EEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGES-----MKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEP
Query: KVGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEE
KVG+KTIK Y QRM+ EN+ RA++VVQQ +TP A+ + + + K + LE F + ELL+NI +H LVPEH ++ EE
Subjt: KVGVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEE
Query: KKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYV
LL RY ++E+QLPRIQ DPVARY+G+KRGQVVKIIRPSETAGRY+TYR V
Subjt: KKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYV
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|
| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT2G41340.1 RNA polymerase II fifth largest subunit, D | 2.2e-23 | 30 | Show/hide |
Query: SEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPKVGV
S E + + R+T +ML+DRGY V D +I+++ +QF+ YGE + + I+ R DSS ++ + VN++ + +
Subjt: SEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPKVGV
Query: KTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEKKTL
+ EN+ ILV+Q ++T A + S F +E+F++ +LLVN+ HVL P+HQ+LN++EK++L
Subjt: KTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEKKTL
Query: LERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYV
L++++++E QLPR+ DP+ RYYGL+ GQV+K+ E + +VTYR V
Subjt: LERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYV
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| AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 3.5e-82 | 65.22 | Show/hide |
Query: VLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPKV
+L+EEE+ RL+RI+KT+ QML+DRGYF+ D E+ MT++QF K+G++MKRED+V KAKRND+SDQL YIFFP+E KV
Subjt: VLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPKV
Query: GVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEKK
GVKT+K YT RMKSENVFRAILVVQQNLTPFARTC++E SSK FHLEVFQ EAE+LVNIK+HVLVPEHQ+L EEKK
Subjt: GVKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEKK
Query: TLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
TLLERYTVKETQLPRIQVTDP+ARY+GLKRGQVVKIIRPSETAGRYVTYRYVV
Subjt: TLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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| AT3G54490.1 RNA polymerase II fifth largest subunit, E | 1.5e-21 | 29.72 | Show/hide |
Query: EITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPKVGVKTI
E R + R T F+ML+DRGY V + E+ +T +F+ +GE + E + I R+D ++L +F EP + VK++
Subjt: EITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPKVGVKTI
Query: KT-YTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEKKTLLE
+ + Q + + ILV+Q + FA+ +T F +E F + +LLVNI H+ P+ ++LN EEK+ LL
Subjt: KT-YTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEKKTLLE
Query: RYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
++ +++ QLP +Q D RYYGLK+ QVVKI E G +VTYR ++
Subjt: RYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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| AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 4.8e-23 | 31.08 | Show/hide |
Query: LSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPKVG
LS EE R + R+ QML+DRGY V D +I+++ F+ YGE + + I+ R+DS+ + + I F V
Subjt: LSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPKVG
Query: VKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEKKT
V I++ + S+ +++V QN E S F +E+FQ+ +LLVNI H L P+HQ+LN+EEK T
Subjt: VKTIKTYTQRMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEKKT
Query: LLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYV
LL++++++E QLPRI D + RYYGL++GQVVK+ E +V +R V
Subjt: LLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYV
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| AT5G57980.1 RNA polymerase II fifth largest subunit, C | 2.6e-37 | 37.8 | Show/hide |
Query: EEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESM---KREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPKV
++EITR+F++R+TV QML+DRGY + + ++++ RE+F ++ ++M +E + ++ K + +D+ IY+F+PE PKV
Subjt: EEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESM---KREDIVINKAKRNDSSDQLLTFSYKSYKFLVNSLICLPPLIIYIFFPEEPKV
Query: GVKTIKTYTQ-RMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEK
GV IK +M+ + V R I+VV +T AR ++E +K+ +EVF+ EAEL+ NI +H LV ++ +L+++ K
Subjt: GVKTIKTYTQ-RMKSENVFRAILVVQQNLTPFARTCMTEASSKLFHLEVFQLLTTQESKSGGVWKNFFDWIAHVHEAELLVNIKDHVLVPEHQLLNNEEK
Query: KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
K LL YTV++TQLPRI VTDP+ARYYGLKRGQVVKI R T+ Y TYR+ V
Subjt: KTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
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