| GenBank top hits | e value | %identity | Alignment |
|---|
| EOY30724.1 Eukaryotic rpb5 RNA polymerase subunit family protein isoform 2, partial [Theobroma cacao] | 5.6e-48 | 79.37 | Show/hide |
Query: MLKDRGFFVGDFEIDATREQFKHKYGESMKREDIVINKAKRNDSSDQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYG
MLKDRG+FVGDFEI T+ QF KYGE+MKRED+VINK KRND+SDQE+ELLVN+K+H LVPEHQ+LTNEEKKTLL+RYTVKETQ+ +DP+ARYYG
Subjt: MLKDRGFFVGDFEIDATREQFKHKYGESMKREDIVINKAKRNDSSDQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYG
Query: LKRGQVVKIIRPSETAGRYITYRYVV
LKRGQVVKIIRPSETAGRY+TYRYVV
Subjt: LKRGQVVKIIRPSETAGRYITYRYVV
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| ESR64457.1 hypothetical protein CICLE_v10009504mg [Citrus clementina] | 5.1e-49 | 81.75 | Show/hide |
Query: MLKDRGFFVGDFEIDATREQFKHKYGESMKREDIVINKAKRNDSSDQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYG
ML+DRG+FVGDFEI+ ++EQF K+GE+MKRED+VINKA RNDSSDQEAELLVNIK+HVLVPEHQ+LTNEEKKTLL+RYTVKETQ+ TDP+ARYYG
Subjt: MLKDRGFFVGDFEIDATREQFKHKYGESMKREDIVINKAKRNDSSDQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYG
Query: LKRGQVVKIIRPSETAGRYITYRYVV
LKRGQVVKIIRPSETAGRY+TYRYVV
Subjt: LKRGQVVKIIRPSETAGRYITYRYVV
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| KAF3965687.1 hypothetical protein CMV_010147 [Castanea mollissima] | 2.3e-49 | 80.95 | Show/hide |
Query: MLKDRGFFVGDFEIDATREQFKHKYGESMKREDIVINKAKRNDSSDQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYG
MLKDRG+ V DFE+D T++QF+ KYGESMKRED+VINK KR DSSDQEAEL+VNIK+HVLVPEHQ+LT EEKKTLLERYTVKETQ+ TDP+ARYYG
Subjt: MLKDRGFFVGDFEIDATREQFKHKYGESMKREDIVINKAKRNDSSDQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYG
Query: LKRGQVVKIIRPSETAGRYITYRYVV
LKRGQVVKIIRPSETAGRY+TYRYVV
Subjt: LKRGQVVKIIRPSETAGRYITYRYVV
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| KAG7014568.1 DNA-directed RNA polymerases II and IV subunit 5A, partial [Cucurbita argyrosperma subsp. argyrosperma] | 5.1e-49 | 63.54 | Show/hide |
Query: MLKDRGFFVGDFEIDATREQFKHKYGESMKREDIVINKAKRNDSSD------------------------------------------------------
MLKDRG+FVGDFEID +REQFKHKYGESMKREDIVINKAKRNDSSD
Subjt: MLKDRGFFVGDFEIDATREQFKHKYGESMKREDIVINKAKRNDSSD------------------------------------------------------
Query: ------QEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQMTDPVARYYGLKRGQVVKIIRPSETAGRYITYRYVV
QEAELLVN+KDHVLVPEHQLLTNEEKKTLLERYTVKETQ+TDPVARYYGLKRGQVVKIIRPSETAGRY+TYRYVV
Subjt: ------QEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQMTDPVARYYGLKRGQVVKIIRPSETAGRYITYRYVV
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| KAG7025474.1 DNA-directed RNA polymerases II and IV subunit 5A [Cucurbita argyrosperma subsp. argyrosperma] | 3.1e-54 | 89.68 | Show/hide |
Query: MLKDRGFFVGDFEIDATREQFKHKYGESMKREDIVINKAKRNDSSDQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYG
MLKDRG+FVGDFE+D +REQFK+KYGESMKREDIVINKAKRNDSSDQEAELLVNIKDHVLVPEHQLL+NEEKKTLLERYTVKETQ+ TDPVARYYG
Subjt: MLKDRGFFVGDFEIDATREQFKHKYGESMKREDIVINKAKRNDSSDQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYG
Query: LKRGQVVKIIRPSETAGRYITYRYVV
LKRGQVVKIIRPSETAGRY+TYRYVV
Subjt: LKRGQVVKIIRPSETAGRYITYRYVV
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A061GUE1 Eukaryotic rpb5 RNA polymerase subunit family protein isoform 2 (Fragment) | 2.7e-48 | 79.37 | Show/hide |
Query: MLKDRGFFVGDFEIDATREQFKHKYGESMKREDIVINKAKRNDSSDQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYG
MLKDRG+FVGDFEI T+ QF KYGE+MKRED+VINK KRND+SDQE+ELLVN+K+H LVPEHQ+LTNEEKKTLL+RYTVKETQ+ +DP+ARYYG
Subjt: MLKDRGFFVGDFEIDATREQFKHKYGESMKREDIVINKAKRNDSSDQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYG
Query: LKRGQVVKIIRPSETAGRYITYRYVV
LKRGQVVKIIRPSETAGRY+TYRYVV
Subjt: LKRGQVVKIIRPSETAGRYITYRYVV
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| A0A2I4E6J8 DNA-directed RNA polymerases II and IV subunit 5A-like | 4.3e-46 | 60.22 | Show/hide |
Query: MLKDRGFFVGDFEIDATREQFKHKYGESMKREDIVINKAKRNDSSD------------------------------------------------------
MLKDRG+FVGDFEID T+EQFK KYGESMKRED+VINKAKRNDSSD
Subjt: MLKDRGFFVGDFEIDATREQFKHKYGESMKREDIVINKAKRNDSSD------------------------------------------------------
Query: ------QEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYGLKRGQVVKIIRPSETAGRYITYRYVV
QEAELL+NIKDHVLVPEHQ+LTNEEKKTLLERYTVKETQ+ TDPVARYYGLKRGQVVKIIRPSETAGRY+TYRYVV
Subjt: ------QEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYGLKRGQVVKIIRPSETAGRYITYRYVV
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| A0A6J1GQK9 DNA-directed RNA polymerases II and IV subunit 5A-like | 1.8e-47 | 61.29 | Show/hide |
Query: MLKDRGFFVGDFEIDATREQFKHKYGESMKREDIVINKAKRNDSSD------------------------------------------------------
MLKDRG+FVGDFEID +REQFKHKYGESMKRED+VINKAKRNDSSD
Subjt: MLKDRGFFVGDFEIDATREQFKHKYGESMKREDIVINKAKRNDSSD------------------------------------------------------
Query: ------QEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYGLKRGQVVKIIRPSETAGRYITYRYVV
QEAELLVN+KDHVLVPEHQLLTNEEKKTLLERYTVKETQ+ TDPVARYYGLKRGQVVKIIRPSETAGRY+TYRYVV
Subjt: ------QEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYGLKRGQVVKIIRPSETAGRYITYRYVV
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| A0A6J1JRV4 DNA-directed RNA polymerases II and IV subunit 5A-like | 1.3e-47 | 61.83 | Show/hide |
Query: MLKDRGFFVGDFEIDATREQFKHKYGESMKREDIVINKAKRNDSSD------------------------------------------------------
MLKDRG+FVGDFEID +REQFKHKYGESMKREDIVINKAKRNDSSD
Subjt: MLKDRGFFVGDFEIDATREQFKHKYGESMKREDIVINKAKRNDSSD------------------------------------------------------
Query: ------QEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYGLKRGQVVKIIRPSETAGRYITYRYVV
QEAELLVN+KDHVLVPEHQLLTNEEKKTLLERYTVKETQ+ TDPVARYYGLKRGQVVKIIRPSETAGRY+TYRYVV
Subjt: ------QEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYGLKRGQVVKIIRPSETAGRYITYRYVV
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| V4UEF9 Uncharacterized protein | 2.5e-49 | 81.75 | Show/hide |
Query: MLKDRGFFVGDFEIDATREQFKHKYGESMKREDIVINKAKRNDSSDQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYG
ML+DRG+FVGDFEI+ ++EQF K+GE+MKRED+VINKA RNDSSDQEAELLVNIK+HVLVPEHQ+LTNEEKKTLL+RYTVKETQ+ TDP+ARYYG
Subjt: MLKDRGFFVGDFEIDATREQFKHKYGESMKREDIVINKAKRNDSSDQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYG
Query: LKRGQVVKIIRPSETAGRYITYRYVV
LKRGQVVKIIRPSETAGRY+TYRYVV
Subjt: LKRGQVVKIIRPSETAGRYITYRYVV
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| A8XGH1 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 1.6e-21 | 68.35 | Show/hide |
Query: EAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYGLKRGQVVKIIRPSETAGRYITYRYVV
EAEL+VNI +H LVPEH ++T EEK LL RY +K++Q+ DPVARY+GL+RGQVVKIIRPSETAGRYITYR VV
Subjt: EAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYGLKRGQVVKIIRPSETAGRYITYRYVV
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| O81098 DNA-directed RNA polymerases II and IV subunit 5A | 2.9e-39 | 50.54 | Show/hide |
Query: MLKDRGFFVGDFEIDATREQFKHKYGESMKREDIVINKAKRNDSSD------------------------------------------------------
ML+DRG+F+ D E+ T++QF K+G++MKRED+V KAKRND+SD
Subjt: MLKDRGFFVGDFEIDATREQFKHKYGESMKREDIVINKAKRNDSSD------------------------------------------------------
Query: ------QEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYGLKRGQVVKIIRPSETAGRYITYRYVV
QEAE+LVNIK+HVLVPEHQ+LT EEKKTLLERYTVKETQ+ TDP+ARY+GLKRGQVVKIIRPSETAGRY+TYRYVV
Subjt: ------QEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYGLKRGQVVKIIRPSETAGRYITYRYVV
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| Q54EH2 DNA-directed RNA polymerases I, II, and III subunit rpabc1 | 6.1e-21 | 69.62 | Show/hide |
Query: EAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYGLKRGQVVKIIRPSETAGRYITYRYVV
EAELLVNI H LVP+H LLT EEK LL RY +KE+Q+ DPVARYYGL RG VVKI+RPSETAGRYITYR V
Subjt: EAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYGLKRGQVVKIIRPSETAGRYITYRYVV
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| Q80UW8 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 8.8e-20 | 64.1 | Show/hide |
Query: EAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQMT-----DPVARYYGLKRGQVVKIIRPSETAGRYITYRYV
+ ELL+NI +H LVPEH ++T EE LL RY ++E+Q+ DPVARY+G+KRGQVVKIIRPSETAGRYITYR V
Subjt: EAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQMT-----DPVARYYGLKRGQVVKIIRPSETAGRYITYRYV
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| Q9N5K2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 1.6e-21 | 68.35 | Show/hide |
Query: EAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYGLKRGQVVKIIRPSETAGRYITYRYVV
EAEL+VNI +H LVPEH ++T EEK LL RY +K++Q+ DPVARY+GL+RGQVVKIIRPSETAGRYITYR VV
Subjt: EAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYGLKRGQVVKIIRPSETAGRYITYRYVV
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT2G41340.1 RNA polymerase II fifth largest subunit, D | 8.2e-13 | 27.72 | Show/hide |
Query: MLKDRGFFVGDFEIDATREQFKHKYGESMKREDIVINKAKRNDSSD------------------------------------------------------
ML+DRG+ V D +I+ + +QF+ YGE + + I+ R DSS
Subjt: MLKDRGFFVGDFEIDATREQFKHKYGESMKREDIVINKAKRNDSSD------------------------------------------------------
Query: -----QEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYGLKRGQVVKIIRPSETAGRYITYRYV
+ +LLVN+ HVL P+HQ+L ++EK++LL++++++E Q+ DP+ RYYGL+ GQV+K+ E + ++TYR V
Subjt: -----QEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYGLKRGQVVKIIRPSETAGRYITYRYV
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| AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 2.1e-40 | 50.54 | Show/hide |
Query: MLKDRGFFVGDFEIDATREQFKHKYGESMKREDIVINKAKRNDSSD------------------------------------------------------
ML+DRG+F+ D E+ T++QF K+G++MKRED+V KAKRND+SD
Subjt: MLKDRGFFVGDFEIDATREQFKHKYGESMKREDIVINKAKRNDSSD------------------------------------------------------
Query: ------QEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYGLKRGQVVKIIRPSETAGRYITYRYVV
QEAE+LVNIK+HVLVPEHQ+LT EEKKTLLERYTVKETQ+ TDP+ARY+GLKRGQVVKIIRPSETAGRY+TYRYVV
Subjt: ------QEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYGLKRGQVVKIIRPSETAGRYITYRYVV
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| AT3G54490.1 RNA polymerase II fifth largest subunit, E | 8.4e-10 | 40.26 | Show/hide |
Query: ELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYGLKRGQVVKIIRPSETAGRYITYRYVV
+LLVNI H+ P+ ++L EEK+ LL ++ +++ Q+ D RYYGLK+ QVVKI E G ++TYR ++
Subjt: ELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYGLKRGQVVKIIRPSETAGRYITYRYVV
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| AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 1.5e-11 | 43.04 | Show/hide |
Query: QEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYGLKRGQVVKIIRPSETAGRYITYRYV
Q +LLVNI H L P+HQ+L +EEK TLL++++++E Q+ D + RYYGL++GQVVK+ E ++ +R V
Subjt: QEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYGLKRGQVVKIIRPSETAGRYITYRYV
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| AT5G57980.1 RNA polymerase II fifth largest subunit, C | 1.8e-15 | 53.75 | Show/hide |
Query: QEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYGLKRGQVVKIIRPSETAGRYITYRYVV
+EAEL+ NI +H LV ++ +L ++ KK LL YTV++TQ+ TDP+ARYYGLKRGQVVKI R T+ Y TYR+ V
Subjt: QEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQM-----TDPVARYYGLKRGQVVKIIRPSETAGRYITYRYVV
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