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Lsi02G022740 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G022740
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionF-box/kelch-repeat protein SKIP30-like
Genome locationchr02:29320066..29320637
RNA-Seq ExpressionLsi02G022740
SyntenyLsi02G022740
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR006652 - Kelch repeat type 1
IPR015915 - Kelch-type beta propeller


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064052.1 F-box/kelch-repeat protein SKIP30-like [Cucumis melo var. makuwa]5.0e-3447.85Show/hide
Query:  MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH----------------------------------------------------
        MSGLIEGLPDA++LRC+A+IP+YL+PKL LVSRSWKAAI S ELFRA                                                     
Subjt:  MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH----------------------------------------------------

Query:  ---------RSFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIYGPEKD
                 RS + DPVTG  D++ S NEVWS DPITR WSMRAPML    MFAC V+DGKIIVAGG  SK K TS  E+Y  EKD
Subjt:  ---------RSFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIYGPEKD

KAG7014455.1 F-box/kelch-repeat protein SKIP30 [Cucurbita argyrosperma subsp. argyrosperma]3.6e-3245.16Show/hide
Query:  MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH----------------------------------------------------
        MSGLIEGLPDA+++RC+AF+P+YL+PKLELVSRSWKAAI S ELFRA                                                     
Subjt:  MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH----------------------------------------------------

Query:  ---------RSFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIYGPEKD
                 R  + DPVTG  D++ S NEVWS DP+TR WSMRAPML     FAC V+DGKI+VAGG  S  K TS  E+Y  EKD
Subjt:  ---------RSFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIYGPEKD

XP_004146975.1 F-box/kelch-repeat protein SKIP30 [Cucumis sativus]1.3e-3448.39Show/hide
Query:  MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH----------------------------------------------------
        MSGLIEGLPDA++LRC+A+IP+YL+PKLELVSRSWKAAI S ELFRA                                                     
Subjt:  MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH----------------------------------------------------

Query:  ---------RSFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIYGPEKD
                 RS + DPVTG  D++ S NEVWS DPITR WSMRAPML    MFAC V+DGKIIVAGG  SK K TS  E+Y  EKD
Subjt:  ---------RSFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIYGPEKD

XP_008451324.1 PREDICTED: F-box/kelch-repeat protein SKIP30-like [Cucumis melo]5.0e-3447.85Show/hide
Query:  MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH----------------------------------------------------
        MSGLIEGLPDA++LRC+A+IP+YL+PKL LVSRSWKAAI S ELFRA                                                     
Subjt:  MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH----------------------------------------------------

Query:  ---------RSFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIYGPEKD
                 RS + DPVTG  D++ S NEVWS DPITR WSMRAPML    MFAC V+DGKIIVAGG  SK K TS  E+Y  EKD
Subjt:  ---------RSFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIYGPEKD

XP_022150165.1 F-box/kelch-repeat protein SKIP30-like [Momordica charantia]8.5e-3447.85Show/hide
Query:  MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH----------------------------------------------------
        MSGLIEGLPDA+ALRC+A +P+YL+PKLELVSRSWKAA  SAELFRA                                                     
Subjt:  MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH----------------------------------------------------

Query:  ---------RSFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIYGPEKD
                 RS + DP+TG  D++LS NEVWS DP+TRNW MRAPML    MFAC VL+GKIIVAGG  S  K TS  EIY  EKD
Subjt:  ---------RSFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIYGPEKD

TrEMBL top hitse value%identityAlignment
A0A0A0K7B1 Uncharacterized protein6.4e-3548.39Show/hide
Query:  MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH----------------------------------------------------
        MSGLIEGLPDA++LRC+A+IP+YL+PKLELVSRSWKAAI S ELFRA                                                     
Subjt:  MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH----------------------------------------------------

Query:  ---------RSFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIYGPEKD
                 RS + DPVTG  D++ S NEVWS DPITR WSMRAPML    MFAC V+DGKIIVAGG  SK K TS  E+Y  EKD
Subjt:  ---------RSFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIYGPEKD

A0A1S3BQL6 F-box/kelch-repeat protein SKIP30-like2.4e-3447.85Show/hide
Query:  MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH----------------------------------------------------
        MSGLIEGLPDA++LRC+A+IP+YL+PKL LVSRSWKAAI S ELFRA                                                     
Subjt:  MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH----------------------------------------------------

Query:  ---------RSFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIYGPEKD
                 RS + DPVTG  D++ S NEVWS DPITR WSMRAPML    MFAC V+DGKIIVAGG  SK K TS  E+Y  EKD
Subjt:  ---------RSFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIYGPEKD

A0A5A7V6S8 F-box/kelch-repeat protein SKIP30-like2.4e-3447.85Show/hide
Query:  MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH----------------------------------------------------
        MSGLIEGLPDA++LRC+A+IP+YL+PKL LVSRSWKAAI S ELFRA                                                     
Subjt:  MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH----------------------------------------------------

Query:  ---------RSFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIYGPEKD
                 RS + DPVTG  D++ S NEVWS DPITR WSMRAPML    MFAC V+DGKIIVAGG  SK K TS  E+Y  EKD
Subjt:  ---------RSFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIYGPEKD

A0A6J1D7Q9 F-box/kelch-repeat protein SKIP30-like4.1e-3447.85Show/hide
Query:  MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH----------------------------------------------------
        MSGLIEGLPDA+ALRC+A +P+YL+PKLELVSRSWKAA  SAELFRA                                                     
Subjt:  MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH----------------------------------------------------

Query:  ---------RSFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIYGPEKD
                 RS + DP+TG  D++LS NEVWS DP+TRNW MRAPML    MFAC VL+GKIIVAGG  S  K TS  EIY  EKD
Subjt:  ---------RSFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIYGPEKD

A0A6J1JW98 F-box/kelch-repeat protein SKIP30-like2.3e-3245.7Show/hide
Query:  MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH----------------------------------------------------
        MSGLIEGLPDA+++RC+AF+P+YL+PKLELVSRSWKAAI S ELFRA                                                     
Subjt:  MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAH----------------------------------------------------

Query:  ---------RSFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIYGPEKD
                 R  + DPVTG  +E  S NEVWS DP+TR WSMRAPML    MFAC V+DGKI+VAGG  S  K TS  E+Y  EKD
Subjt:  ---------RSFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIYGPEKD

SwissProt top hitse value%identityAlignment
Q9M1W7 F-box/kelch-repeat protein SKIP304.4e-2536.65Show/hide
Query:  MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAHR---------------------------------------------------
        MSGL++G+P+AVALRC+A +P +L+P LELVSRSW+AAI S ELFR  +                                                   
Subjt:  MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAHR---------------------------------------------------

Query:  ----------SFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIYGPEKDNLVSI
                  S +  PVTG  D   + ++VWS+D + R W+ RA ML    MFAC VL GKI+VAGG  +  K  S  E+Y PE D   SI
Subjt:  ----------SFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIYGPEKDNLVSI

Arabidopsis top hitse value%identityAlignment
AT3G63220.1 Galactose oxidase/kelch repeat superfamily protein3.1e-2636.65Show/hide
Query:  MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAHR---------------------------------------------------
        MSGL++G+P+AVALRC+A +P +L+P LELVSRSW+AAI S ELFR  +                                                   
Subjt:  MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAHR---------------------------------------------------

Query:  ----------SFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIYGPEKDNLVSI
                  S +  PVTG  D   + ++VWS+D + R W+ RA ML    MFAC VL GKI+VAGG  +  K  S  E+Y PE D   SI
Subjt:  ----------SFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIYGPEKDNLVSI

AT3G63220.2 Galactose oxidase/kelch repeat superfamily protein3.1e-2636.65Show/hide
Query:  MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAHR---------------------------------------------------
        MSGL++G+P+AVALRC+A +P +L+P LELVSRSW+AAI S ELFR  +                                                   
Subjt:  MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAHR---------------------------------------------------

Query:  ----------SFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIYGPEKDNLVSI
                  S +  PVTG  D   + ++VWS+D + R W+ RA ML    MFAC VL GKI+VAGG  +  K  S  E+Y PE D   SI
Subjt:  ----------SFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIYGPEKDNLVSI

AT5G60570.1 Galactose oxidase/kelch repeat superfamily protein2.6e-0423.93Show/hide
Query:  LIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAHRSFS--------------------------------ADPVTGHFD-EDLSCNE--
        ++ GL D VAL C+A++P   YP L  V++ +   I S  LF   +                                    D    H D E L+ ++  
Subjt:  LIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAHRSFS--------------------------------ADPVTGHFD-EDLSCNE--

Query:  -----------VWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIY
                   +W +   +R W     M +   +FA   L G  IVAGG D    I ++ E+Y
Subjt:  -----------VWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSKYKITSTVEIY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGTCTGATTGAAGGTCTCCCTGATGCAGTTGCCCTTAGATGCGTTGCTTTTATTCCATTTTACCTCTACCCCAAGTTGGAACTCGTTTCTCGCTCCTGGAAAGC
TGCCATTTGGAGTGCTGAACTGTTTAGAGCTCACAGGAGCTTTAGTGCTGATCCAGTGACCGGTCATTTTGATGAAGATTTGTCGTGCAATGAGGTATGGTCCCATGACC
CTATAACCCGAAACTGGTCGATGCGAGCACCAATGCTCAAGTCATGTGGAATGTTTGCTTGCAGTGTTTTGGATGGGAAGATCATTGTTGCAGGTGGCATGGATAGCAAA
TATAAAATAACTTCTACAGTAGAAATTTATGGTCCTGAGAAGGATAATTTGGTTTCCATTACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGGTCTGATTGAAGGTCTCCCTGATGCAGTTGCCCTTAGATGCGTTGCTTTTATTCCATTTTACCTCTACCCCAAGTTGGAACTCGTTTCTCGCTCCTGGAAAGC
TGCCATTTGGAGTGCTGAACTGTTTAGAGCTCACAGGAGCTTTAGTGCTGATCCAGTGACCGGTCATTTTGATGAAGATTTGTCGTGCAATGAGGTATGGTCCCATGACC
CTATAACCCGAAACTGGTCGATGCGAGCACCAATGCTCAAGTCATGTGGAATGTTTGCTTGCAGTGTTTTGGATGGGAAGATCATTGTTGCAGGTGGCATGGATAGCAAA
TATAAAATAACTTCTACAGTAGAAATTTATGGTCCTGAGAAGGATAATTTGGTTTCCATTACCTGA
Protein sequenceShow/hide protein sequence
MSGLIEGLPDAVALRCVAFIPFYLYPKLELVSRSWKAAIWSAELFRAHRSFSADPVTGHFDEDLSCNEVWSHDPITRNWSMRAPMLKSCGMFACSVLDGKIIVAGGMDSK
YKITSTVEIYGPEKDNLVSIT