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Lsi02G022750 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G022750
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionF-box/kelch-repeat protein SKIP30-like
Genome locationchr02:29320711..29321155
RNA-Seq ExpressionLsi02G022750
SyntenyLsi02G022750
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR015915 - Kelch-type beta propeller


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575922.1 F-box/kelch-repeat protein SKIP30, partial [Cucurbita argyrosperma subsp. sororia]3.4e-1552.44Show/hide
Query:  VQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLFSLSQGFIFKQDGPHYQLLIPAPQFLGRVGTGMIYFRGKLYVIGGMYRHE
        VQ FDSLE +WRVE+YGW   P   A V  SL+++SQG +FKQ+    Q ++ A QF+ R+G  M+ FRG+LYVIGG+ R E
Subjt:  VQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLFSLSQGFIFKQDGPHYQLLIPAPQFLGRVGTGMIYFRGKLYVIGGMYRHE

KAG7014455.1 F-box/kelch-repeat protein SKIP30 [Cucurbita argyrosperma subsp. argyrosperma]3.4e-1552.44Show/hide
Query:  VQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLFSLSQGFIFKQDGPHYQLLIPAPQFLGRVGTGMIYFRGKLYVIGGMYRHE
        VQ FDSLE +WRVE+YGW   P   A V  SL+++SQG +FKQ+    Q ++ A QF+ R+G  M+ FRG+LYVIGG+ R E
Subjt:  VQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLFSLSQGFIFKQDGPHYQLLIPAPQFLGRVGTGMIYFRGKLYVIGGMYRHE

XP_022150165.1 F-box/kelch-repeat protein SKIP30-like [Momordica charantia]6.1e-1760.49Show/hide
Query:  VQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLFSLSQGFIFKQDGPHYQLLIPA-PQFLGRVGTGMIYFRGKLYVIGGMYR
        VQ FD+LE +WRVE+YGW   P  +AAVQDSL+ +  G IFKQDG   Q++IPA  QFL R+G  MI FRG+LYVIGG+ R
Subjt:  VQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLFSLSQGFIFKQDGPHYQLLIPA-PQFLGRVGTGMIYFRGKLYVIGGMYR

XP_038896848.1 F-box/kelch-repeat protein SKIP30-like [Benincasa hispida]8.9e-1646.6Show/hide
Query:  MPVVQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLFSLSQGFIFKQDGPHYQLLIPAPQFLGRVGTGMIYFRGKLYVIGGMYRHEDEVESLGFVYVFSFL
        +P+VQTFDS+E RW VE+Y WF+    + A +D ++ +SQG+IF Q G + +++I A QF    G GMI FRG+LYVIGG    + + E L  V+V   L
Subjt:  MPVVQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLFSLSQGFIFKQDGPHYQLLIPAPQFLGRVGTGMIYFRGKLYVIGGMYRHEDEVESLGFVYVFSFL

Query:  VLC
         LC
Subjt:  VLC

XP_038900158.1 F-box/kelch-repeat protein SKIP30-like [Benincasa hispida]5.7e-1555Show/hide
Query:  VQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLF--SLSQGFIFKQDGPHYQLLIPAPQFLGRVGTGMIYFRGKLYVIGGM
        VQ F+S E +WRVE+YGW       A V DSL+  SL+QGF+FKQDGP +Q+++ A QFL R+G  +I FRG+LY+IGG+
Subjt:  VQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLF--SLSQGFIFKQDGPHYQLLIPAPQFLGRVGTGMIYFRGKLYVIGGM

TrEMBL top hitse value%identityAlignment
A0A0A0K4Y2 F-box domain-containing protein4.7e-1543.88Show/hide
Query:  MPVVQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLFSLSQGFIFKQDGPHYQLLIPAPQFLGRVGTGMIYFRGKLYVIGGMYRHEDEVESLGFVYVFS
        +P+VQTFD++E RW +E+Y WF+    + A +D ++ +SQG+IF Q G   +++I A QF    G GMI FRG+LYVIGG    + + E L  V+V +
Subjt:  MPVVQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLFSLSQGFIFKQDGPHYQLLIPAPQFLGRVGTGMIYFRGKLYVIGGMYRHEDEVESLGFVYVFS

A0A1S3BR74 F-box/kelch-repeat protein SKIP30-like1.1e-1443.88Show/hide
Query:  MPVVQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLFSLSQGFIFKQDGPHYQLLIPAPQFLGRVGTGMIYFRGKLYVIGGMYRHEDEVESLGFVYVFS
        +P+VQTFD++E +W VE+Y WF+    + A +D ++ +SQG+IF Q G   +++I A QF    G GMI FRG+LYVIGG    + + E L  V+V +
Subjt:  MPVVQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLFSLSQGFIFKQDGPHYQLLIPAPQFLGRVGTGMIYFRGKLYVIGGMYRHEDEVESLGFVYVFS

A0A6J1D7Q9 F-box/kelch-repeat protein SKIP30-like3.0e-1760.49Show/hide
Query:  VQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLFSLSQGFIFKQDGPHYQLLIPA-PQFLGRVGTGMIYFRGKLYVIGGMYR
        VQ FD+LE +WRVE+YGW   P  +AAVQDSL+ +  G IFKQDG   Q++IPA  QFL R+G  MI FRG+LYVIGG+ R
Subjt:  VQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLFSLSQGFIFKQDGPHYQLLIPA-PQFLGRVGTGMIYFRGKLYVIGGMYR

A0A6J1GPT2 F-box/kelch-repeat protein SKIP30-like4.7e-1551.22Show/hide
Query:  VQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLFSLSQGFIFKQDGPHYQLLIPAPQFLGRVGTGMIYFRGKLYVIGGMYRHE
        VQ FDSLE +WRVE+YGW   P   A V  SL+++SQG +FKQ+    Q ++ A QF+ R+G  ++ FRG+LYVIGG+ R E
Subjt:  VQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLFSLSQGFIFKQDGPHYQLLIPAPQFLGRVGTGMIYFRGKLYVIGGMYRHE

A0A6J1JW98 F-box/kelch-repeat protein SKIP30-like6.2e-1552.44Show/hide
Query:  VQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLFSLSQGFIFKQDGPHYQLLIPAPQFLGRVGTGMIYFRGKLYVIGGMYRHE
        VQ FDSLE +WRVE YGW   P   A V  SL+++SQG +FKQ+    Q ++ A QF+ R+G  M+ FRG+LYVIGG+ R E
Subjt:  VQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLFSLSQGFIFKQDGPHYQLLIPAPQFLGRVGTGMIYFRGKLYVIGGMYRHE

SwissProt top hitse value%identityAlignment
Q9M1W7 F-box/kelch-repeat protein SKIP306.4e-0930.86Show/hide
Query:  MPVVQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLFSLSQGFIFKQDGPHYQLLIPAPQFLGRVGTGMIYFRGKLYVIGGM
        +  VQ  +S++  W V++YGW   P  +  V+D L+ +S G +FKQ+G  ++++  A +F  R+G  M     ++ ++GG+
Subjt:  MPVVQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLFSLSQGFIFKQDGPHYQLLIPAPQFLGRVGTGMIYFRGKLYVIGGM

Arabidopsis top hitse value%identityAlignment
AT3G63220.1 Galactose oxidase/kelch repeat superfamily protein4.5e-1030.86Show/hide
Query:  MPVVQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLFSLSQGFIFKQDGPHYQLLIPAPQFLGRVGTGMIYFRGKLYVIGGM
        +  VQ  +S++  W V++YGW   P  +  V+D L+ +S G +FKQ+G  ++++  A +F  R+G  M     ++ ++GG+
Subjt:  MPVVQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLFSLSQGFIFKQDGPHYQLLIPAPQFLGRVGTGMIYFRGKLYVIGGM

AT3G63220.2 Galactose oxidase/kelch repeat superfamily protein4.5e-1030.86Show/hide
Query:  MPVVQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLFSLSQGFIFKQDGPHYQLLIPAPQFLGRVGTGMIYFRGKLYVIGGM
        +  VQ  +S++  W V++YGW   P  +  V+D L+ +S G +FKQ+G  ++++  A +F  R+G  M     ++ ++GG+
Subjt:  MPVVQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLFSLSQGFIFKQDGPHYQLLIPAPQFLGRVGTGMIYFRGKLYVIGGM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCGTAGTGCAAACGTTTGATAGTTTGGAGTGTAGGTGGAGAGTTGAGGAATATGGTTGGTTTACCAGCCCGAGCTCGTTGGCTGCTGTTCAAGATTCACTCTTTAG
CTTGAGCCAAGGATTTATCTTCAAGCAGGATGGACCACATTACCAACTTTTGATTCCGGCGCCTCAGTTTCTAGGCAGAGTCGGGACAGGAATGATCTATTTTAGAGGCA
AACTGTATGTGATTGGAGGAATGTATCGACACGAGGACGAAGTTGAGAGTTTAGGATTTGTGTATGTTTTTTCTTTTCTAGTGTTGTGTTTTTGTGAGACATCCAATAGT
ACATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCGTAGTGCAAACGTTTGATAGTTTGGAGTGTAGGTGGAGAGTTGAGGAATATGGTTGGTTTACCAGCCCGAGCTCGTTGGCTGCTGTTCAAGATTCACTCTTTAG
CTTGAGCCAAGGATTTATCTTCAAGCAGGATGGACCACATTACCAACTTTTGATTCCGGCGCCTCAGTTTCTAGGCAGAGTCGGGACAGGAATGATCTATTTTAGAGGCA
AACTGTATGTGATTGGAGGAATGTATCGACACGAGGACGAAGTTGAGAGTTTAGGATTTGTGTATGTTTTTTCTTTTCTAGTGTTGTGTTTTTGTGAGACATCCAATAGT
ACATAG
Protein sequenceShow/hide protein sequence
MPVVQTFDSLECRWRVEEYGWFTSPSSLAAVQDSLFSLSQGFIFKQDGPHYQLLIPAPQFLGRVGTGMIYFRGKLYVIGGMYRHEDEVESLGFVYVFSFLVLCFCETSNS
T