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Lsi02G023450 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G023450
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRNase H domain-containing protein
Genome locationchr02:30093653..30095901
RNA-Seq ExpressionLsi02G023450
SyntenyLsi02G023450
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8736010.1 Gibberellin 20 oxidase 1 [Hibiscus syriacus]1.1e-0531.78Show/hide
Query:  SDSICRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNE
        S  I RD  G ++ +     HH+ S  M E L +++V H A D+G   L LESDS  +    +     +SE+G  L D+K  +       F F    GN 
Subjt:  SDSICRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNE

Query:  MAHGLAQLTFANRCDEAWSEPYPITLLDV
         AH +A        D+ W E  P   L V
Subjt:  MAHGLAQLTFANRCDEAWSEPYPITLLDV

TXG47194.1 hypothetical protein EZV62_026488 [Acer yangbiense]1.7e-0632.28Show/hide
Query:  ICRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMAH
        + R+  G+VM+++ K      S  + E LAV+E   LA   GFFP VLESD+  V           S++G+ + D+     D   F F+      N++AH
Subjt:  ICRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMAH

Query:  GLAQLTFANRCDEAWSEPYPITLLDVV
        GLA+L  +N  +  WS   P+ + ++V
Subjt:  GLAQLTFANRCDEAWSEPYPITLLDVV

TXG48983.1 hypothetical protein EZV62_024858 [Acer yangbiense]5.8e-0731.5Show/hide
Query:  ICRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMAH
        + R+ +G+VM++  K      S  + E LAVVE   LA + GFFP VLESD+  V       +   SE+G+ L D+     +   F F +      ++AH
Subjt:  ICRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMAH

Query:  GLAQLTFANRCDEAWSEPYPITLLDVV
        GLA+L  ++  +  W    P+ + ++V
Subjt:  GLAQLTFANRCDEAWSEPYPITLLDVV

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]1.7e-0633.65Show/hide
Query:  ICRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMAH
        I RD  G+V+ + TK+L HV S    E LA VE   +A++ G  P++LE+DS  ++  F    E +S+ G  ++ +K  +   +   + F +  GN +AH
Subjt:  ICRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMAH

Query:  GLAQ
         LA+
Subjt:  GLAQ

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]1.1e-0834.15Show/hide
Query:  ICRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMAH
        I R+  G+VM + TK+L ++ S  M E +  VE   LA  +G  P++LE+DSS +F  F    E +SE G  +   K      +   F F + +GN+ AH
Subjt:  ICRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMAH

Query:  GLAQLTFANRCDEAWSEPYPITL
         LA+     R    W E +P+ L
Subjt:  GLAQLTFANRCDEAWSEPYPITL

TrEMBL top hitse value%identityAlignment
A0A5C7GQX3 RNase H domain-containing protein8.1e-0732.28Show/hide
Query:  ICRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMAH
        + R+  G+VM+++ K      S  + E LAV+E   LA   GFFP VLESD+  V           S++G+ + D+     D   F F+      N++AH
Subjt:  ICRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMAH

Query:  GLAQLTFANRCDEAWSEPYPITLLDVV
        GLA+L  +N  +  WS   P+ + ++V
Subjt:  GLAQLTFANRCDEAWSEPYPITLLDVV

A0A5C7GW84 RNase H domain-containing protein2.8e-0731.5Show/hide
Query:  ICRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMAH
        + R+ +G+VM++  K      S  + E LAVVE   LA + GFFP VLESD+  V       +   SE+G+ L D+     +   F F +      ++AH
Subjt:  ICRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMAH

Query:  GLAQLTFANRCDEAWSEPYPITLLDVV
        GLA+L  ++  +  W    P+ + ++V
Subjt:  GLAQLTFANRCDEAWSEPYPITLLDVV

A0A6A3D317 Gibberellin 20 oxidase 15.3e-0631.78Show/hide
Query:  SDSICRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNE
        S  I RD  G ++ +     HH+ S  M E L +++V H A D+G   L LESDS  +    +     +SE+G  L D+K  +       F F    GN 
Subjt:  SDSICRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNE

Query:  MAHGLAQLTFANRCDEAWSEPYPITLLDV
         AH +A        D+ W E  P   L V
Subjt:  MAHGLAQLTFANRCDEAWSEPYPITLLDV

A0A6J1CDQ4 uncharacterized protein LOC1110105338.1e-0733.65Show/hide
Query:  ICRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMAH
        I RD  G+V+ + TK+L HV S    E LA VE   +A++ G  P++LE+DS  ++  F    E +S+ G  ++ +K  +   +   + F +  GN +AH
Subjt:  ICRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMAH

Query:  GLAQ
         LA+
Subjt:  GLAQ

A0A6J1CIF1 uncharacterized protein LOC1110112375.1e-0934.15Show/hide
Query:  ICRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMAH
        I R+  G+VM + TK+L ++ S  M E +  VE   LA  +G  P++LE+DSS +F  F    E +SE G  +   K      +   F F + +GN+ AH
Subjt:  ICRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCRFKGNEMAH

Query:  GLAQLTFANRCDEAWSEPYPITL
         LA+     R    W E +P+ L
Subjt:  GLAQLTFANRCDEAWSEPYPITL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCGACTCCCTGAACGGAAAAAGGGAAGACGATACGAGCTTAGCGATTCAATATGCAGAGATGTCGAGGGTGAAGTTATGATGGCGACGACAAAATTTCTGCATCA
CGTTGGGTCGACGAGTATGATAGAAGGATTAGCAGTTGTTGAAGTTTTCCATTTGGCTATTGATTTGGGATTTTTTCCACTCGTTTTAGAATCAGACTCTTCTTGTGTGT
TTTTCAGCTTCTTATACGTAATAGAGAGGATCTCAGAGTTAGGTATGCAGTTACAGGATCTTAAAAGAAAGATTTTGGATCCTATGTTGTTCAAATTCCAGTTTTGTCGT
TTTAAAGGTAATGAGATGGCTCATGGTCTTGCTCAACTAACGTTTGCTAATCGGTGTGACGAAGCCTGGTCAGAGCCTTATCCCATAACTCTTTTGGATGTTGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGCGACTCCCTGAACGGAAAAAGGGAAGACGATACGAGCTTAGCGATTCAATATGCAGAGATGTCGAGGGTGAAGTTATGATGGCGACGACAAAATTTCTGCATCA
CGTTGGGTCGACGAGTATGATAGAAGGATTAGCAGTTGTTGAAGTTTTCCATTTGGCTATTGATTTGGGATTTTTTCCACTCGTTTTAGAATCAGACTCTTCTTGTGTGT
TTTTCAGCTTCTTATACGTAATAGAGAGGATCTCAGAGTTAGGTATGCAGTTACAGGATCTTAAAAGAAAGATTTTGGATCCTATGTTGTTCAAATTCCAGTTTTGTCGT
TTTAAAGGTAATGAGATGGCTCATGGTCTTGCTCAACTAACGTTTGCTAATCGGTGTGACGAAGCCTGGTCAGAGCCTTATCCCATAACTCTTTTGGATGTTGTTTAG
Protein sequenceShow/hide protein sequence
MERLPERKKGRRYELSDSICRDVEGEVMMATTKFLHHVGSTSMIEGLAVVEVFHLAIDLGFFPLVLESDSSCVFFSFLYVIERISELGMQLQDLKRKILDPMLFKFQFCR
FKGNEMAHGLAQLTFANRCDEAWSEPYPITLLDVV