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Lsi02G023490 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G023490
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionclassical arabinogalactan protein 26
Genome locationchr02:30128392..30128799
RNA-Seq ExpressionLsi02G023490
SyntenyLsi02G023490
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR039346 - Classical arabinogalactan protein 25/26


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575865.1 hypothetical protein SDJN03_26504, partial [Cucurbita argyrosperma subsp. sororia]1.3e-5386.67Show/hide
Query:  MASTFSLYIPIFMAYTASILAFSFASYPNYYPTLISSISTAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP
        MAS FSLYIPIFMAYTASIL FSFASYPN++P LISSIS APEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP
Subjt:  MASTFSLYIPIFMAYTASILAFSFASYPNYYPTLISSISTAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP

Query:  SQSLPFSAADALNSGGWCWLVLVGFTTALAAELRR
        SQSLPFSAA  LNSGGWCW + V  T A+ AE+ R
Subjt:  SQSLPFSAADALNSGGWCWLVLVGFTTALAAELRR

XP_022953817.1 classical arabinogalactan protein 26 [Cucurbita moschata]2.9e-5385.93Show/hide
Query:  MASTFSLYIPIFMAYTASILAFSFASYPNYYPTLISSISTAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP
        MAS FSLYIPIFMAYTASIL FSFASYPN++P LISSIS APEFSPSPSPSPASDI+PLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP
Subjt:  MASTFSLYIPIFMAYTASILAFSFASYPNYYPTLISSISTAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP

Query:  SQSLPFSAADALNSGGWCWLVLVGFTTALAAELRR
        SQSLPFSAA  LNSGGWCW + V  T A+ AE+ R
Subjt:  SQSLPFSAADALNSGGWCWLVLVGFTTALAAELRR

XP_022991733.1 classical arabinogalactan protein 26 [Cucurbita maxima]1.1e-5285.19Show/hide
Query:  MASTFSLYIPIFMAYTASILAFSFASYPNYYPTLISSISTAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP
        MAS FSLYIPIFMAYTASI AFSFASYPN++P LISSIS APEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDA PAPEMPLPP
Subjt:  MASTFSLYIPIFMAYTASILAFSFASYPNYYPTLISSISTAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP

Query:  SQSLPFSAADALNSGGWCWLVLVGFTTALAAELRR
        SQSLPFSAA  LNSGGWCW + V  T A+  E+ R
Subjt:  SQSLPFSAADALNSGGWCWLVLVGFTTALAAELRR

XP_023548939.1 classical arabinogalactan protein 26-like [Cucurbita pepo subsp. pepo]1.1e-5285.19Show/hide
Query:  MASTFSLYIPIFMAYTASILAFSFASYPNYYPTLISSISTAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP
        MAS FSLYIPIFMAYTASI  FSFASYPN++P LISSIS APEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP
Subjt:  MASTFSLYIPIFMAYTASILAFSFASYPNYYPTLISSISTAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP

Query:  SQSLPFSAADALNSGGWCWLVLVGFTTALAAELRR
        SQSLPFSA   LNSGGWCW + V  T A+ AE+ R
Subjt:  SQSLPFSAADALNSGGWCWLVLVGFTTALAAELRR

XP_038876736.1 classical arabinogalactan protein 26-like [Benincasa hispida]1.6e-5187.59Show/hide
Query:  MASTFSLYIPIFMAYTASILAFSFASYPNYYPTLISSISTAPEFS--PSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPL
        MAS FSLYIPIFMAYTASIL FS ASYPNY PTLISSIS APEFS  PSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEM L
Subjt:  MASTFSLYIPIFMAYTASILAFSFASYPNYYPTLISSISTAPEFS--PSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPL

Query:  PPSQSLPFSAADALNSGGWCWLVLVGFTTALAAELRR
        PPSQSLPFSAA +LN  GWCW VLV  TTALA EL R
Subjt:  PPSQSLPFSAADALNSGGWCWLVLVGFTTALAAELRR

TrEMBL top hitse value%identityAlignment
A0A0A0K510 Uncharacterized protein6.8e-4883.82Show/hide
Query:  MASTFSLYIPIFMAYTASILAFSFASYPNYYPT-LISSISTAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLP
        MAS FSLYIPIFMAYTAS+  FSFASYPN +PT LISSIS APEF  SPSP+PASDISPLFPTPG ATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPL 
Subjt:  MASTFSLYIPIFMAYTASILAFSFASYPNYYPT-LISSISTAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLP

Query:  PSQSLPFSAADALNSGGWCWLVLVGFTTALAAELRR
        PSQSLPFS A ALNSGGWC  V V  TT L AELRR
Subjt:  PSQSLPFSAADALNSGGWCWLVLVGFTTALAAELRR

A0A1S3BRG9 classical arabinogalactan protein 261.0e-4376.26Show/hide
Query:  MASTFSLYIPIFMAYTASILAFSFASYPNYYPT----LISSISTAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEM
        MAS FSLYIPIFMAYTAS   F+FASYPNY+PT    + SSIS APEFSP+P+PS  SDISPLFPTPG ATLPPSSLPTIPSSPSPPNPDFMD APAPEM
Subjt:  MASTFSLYIPIFMAYTASILAFSFASYPNYYPT----LISSISTAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEM

Query:  PLPPSQSLPFSAADALNSGGWCWLVLVGFTTALAAELRR
        PL P+ S+PFSAA ALNS GWC  V +   TALAAEL R
Subjt:  PLPPSQSLPFSAADALNSGGWCWLVLVGFTTALAAELRR

A0A5A7UQZ3 Classical arabinogalactan protein 261.0e-4376.26Show/hide
Query:  MASTFSLYIPIFMAYTASILAFSFASYPNYYPT----LISSISTAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEM
        MAS FSLYIPIFMAYTAS   F+FASYPNY+PT    + SSIS APEFSP+P+PS  SDISPLFPTPG ATLPPSSLPTIPSSPSPPNPDFMD APAPEM
Subjt:  MASTFSLYIPIFMAYTASILAFSFASYPNYYPT----LISSISTAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEM

Query:  PLPPSQSLPFSAADALNSGGWCWLVLVGFTTALAAELRR
        PL P+ S+PFSAA ALNS GWC  V +   TALAAEL R
Subjt:  PLPPSQSLPFSAADALNSGGWCWLVLVGFTTALAAELRR

A0A6J1GPB2 classical arabinogalactan protein 261.4e-5385.93Show/hide
Query:  MASTFSLYIPIFMAYTASILAFSFASYPNYYPTLISSISTAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP
        MAS FSLYIPIFMAYTASIL FSFASYPN++P LISSIS APEFSPSPSPSPASDI+PLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP
Subjt:  MASTFSLYIPIFMAYTASILAFSFASYPNYYPTLISSISTAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP

Query:  SQSLPFSAADALNSGGWCWLVLVGFTTALAAELRR
        SQSLPFSAA  LNSGGWCW + V  T A+ AE+ R
Subjt:  SQSLPFSAADALNSGGWCWLVLVGFTTALAAELRR

A0A6J1JX46 classical arabinogalactan protein 265.3e-5385.19Show/hide
Query:  MASTFSLYIPIFMAYTASILAFSFASYPNYYPTLISSISTAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP
        MAS FSLYIPIFMAYTASI AFSFASYPN++P LISSIS APEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDA PAPEMPLPP
Subjt:  MASTFSLYIPIFMAYTASILAFSFASYPNYYPTLISSISTAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPP

Query:  SQSLPFSAADALNSGGWCWLVLVGFTTALAAELRR
        SQSLPFSAA  LNSGGWCW + V  T A+  E+ R
Subjt:  SQSLPFSAADALNSGGWCWLVLVGFTTALAAELRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G47930.1 arabinogalactan protein 262.0e-0435.82Show/hide
Query:  IPIFMAYTASILAFSFASYPNYYPTLISSISTAPEFSP-------SPSPSPASDISPLFPTPGGATLPPSS-----LPTIPSSPSPPNPDFMDAAPAPEM
        + +F A+T      S   + +     +S+IS AP F P       + +P+ + D SPLFPTPG + + PS      +PTIPSS SPPNPD +   P  E+
Subjt:  IPIFMAYTASILAFSFASYPNYYPTLISSISTAPEFSP-------SPSPSPASDISPLFPTPGGATLPPSS-----LPTIPSSPSPPNPDFMDAAPAPEM

Query:  PLPPSQSLPFSAADALNSGGWCWLVLVGFTTALA
          P    LP S++  L S     L+LV     LA
Subjt:  PLPPSQSLPFSAADALNSGGWCWLVLVGFTTALA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCACTTTCTCTCTCTACATCCCCATTTTCATGGCCTACACAGCTTCTATTTTGGCTTTCTCTTTCGCTTCTTATCCCAATTACTACCCTACCCTCATTTCTTC
CATCTCCACCGCGCCGGAATTTTCTCCCTCGCCGTCGCCGTCACCGGCGTCAGACATTTCTCCGCTCTTTCCGACGCCAGGTGGCGCTACCCTTCCGCCGTCCTCCTTGC
CTACCATCCCCTCCAGTCCCAGCCCTCCAAACCCCGATTTTATGGACGCCGCGCCGGCGCCGGAGATGCCTCTTCCGCCTTCTCAGTCCTTGCCGTTCTCCGCCGCTGAT
GCTCTCAACTCCGGTGGGTGGTGTTGGCTGGTTTTGGTGGGTTTTACTACGGCTCTCGCGGCGGAGCTCCGCCGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCACTTTCTCTCTCTACATCCCCATTTTCATGGCCTACACAGCTTCTATTTTGGCTTTCTCTTTCGCTTCTTATCCCAATTACTACCCTACCCTCATTTCTTC
CATCTCCACCGCGCCGGAATTTTCTCCCTCGCCGTCGCCGTCACCGGCGTCAGACATTTCTCCGCTCTTTCCGACGCCAGGTGGCGCTACCCTTCCGCCGTCCTCCTTGC
CTACCATCCCCTCCAGTCCCAGCCCTCCAAACCCCGATTTTATGGACGCCGCGCCGGCGCCGGAGATGCCTCTTCCGCCTTCTCAGTCCTTGCCGTTCTCCGCCGCTGAT
GCTCTCAACTCCGGTGGGTGGTGTTGGCTGGTTTTGGTGGGTTTTACTACGGCTCTCGCGGCGGAGCTCCGCCGGTGA
Protein sequenceShow/hide protein sequence
MASTFSLYIPIFMAYTASILAFSFASYPNYYPTLISSISTAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSAAD
ALNSGGWCWLVLVGFTTALAAELRR