CuGenDBv2

Gene ID	Lsi02G023530
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	rRNA-processing protein FYV7-like
Genome location	chr02:30207064..30210554
RNA-Seq Expression	Lsi02G023530
Synteny	Lsi02G023530
Gene Ontology terms	NA
InterPro domains	IPR013730 - Fyv7/TAP26

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6593160.1 hypothetical protein SDJN03_12636, partial [Cucurbita argyrosperma subsp. sororia]

1.4e-78

82.13

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Query:  MKNPTGKHEDKNSSKSKFMKNNKHKNMKRVGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEEPHKLK
        MKN  GK E++  SKSKFMK NKHKNMKR+GGKG S +AFANAKSTTDYYNPALIKKQREFYKNAKHV+KYKKLVKHQN QNERPSSS+VGLVE      
Subjt:  MKNPTGKHEDKNSSKSKFMKNNKHKNMKRVGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEEPHKLK

Query:  SKSLRALRGRGENEMKFENQMNGRRGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET
                  GENEM FENQ NGRRG ERNKGVPSLQ LYERKH+EKEKARMEKEAIIAAKKEE+ERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET
Subjt:  SKSLRALRGRGENEMKFENQMNGRRGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET

Query:  IGASMNH
        IGASMNH
Subjt:  IGASMNH

XP_004136058.2 uncharacterized protein LOC101216293 [Cucumis sativus]

6.2e-79

83.09

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Query:  MKNPTGKHEDKNSSKSKFMKNNKHKNMKRVGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEEPHKLK
        MK+  GKHE  N SKSKFM NNKH N+KR+GGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHV+KYKKLVKHQNQ NERPSSSTV LVE      
Subjt:  MKNPTGKHEDKNSSKSKFMKNNKHKNMKRVGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEEPHKLK

Query:  SKSLRALRGRGENEMKFENQMNGRRGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET
                  GENE KFENQ N R GKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEE+ERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET
Subjt:  SKSLRALRGRGENEMKFENQMNGRRGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET

Query:  IGASMNH
        IGAS NH
Subjt:  IGASMNH

XP_008451439.1 PREDICTED: uncharacterized protein LOC103492733 [Cucumis melo]

4.6e-82

85.02

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Query:  MKNPTGKHEDKNSSKSKFMKNNKHKNMKRVGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEEPHKLK
        MKNP GKHE KN SKSKFM  NKH N+KR+GGK LSLEAFANAKSTTDYYNPALIKKQREFYKNAKHV+KYKKLVKHQNQQNERPSSSTVGLVE      
Subjt:  MKNPTGKHEDKNSSKSKFMKNNKHKNMKRVGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEEPHKLK

Query:  SKSLRALRGRGENEMKFENQMNGRRGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET
                  GENE KFENQ NGR GKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEE+ERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET
Subjt:  SKSLRALRGRGENEMKFENQMNGRRGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET

Query:  IGASMNH
        IGAS NH
Subjt:  IGASMNH

XP_022960530.1 uncharacterized protein LOC111461241 [Cucurbita moschata]

1.1e-78

82.13

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Query:  MKNPTGKHEDKNSSKSKFMKNNKHKNMKRVGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEEPHKLK
        MKN  GK E++  SKSKFMK NKHKNMKR+GGKG S +AFANAKSTTDYYNPALIKKQREFYKNAKHV+KYKKLVKHQN QNERPSSS+VGLVE      
Subjt:  MKNPTGKHEDKNSSKSKFMKNNKHKNMKRVGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEEPHKLK

Query:  SKSLRALRGRGENEMKFENQMNGRRGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET
                  GENEMKFEN+ NGRRG ERNKGVPSLQ LYERKH+EKEKARMEKEAIIAAKKEE+ERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET
Subjt:  SKSLRALRGRGENEMKFENQMNGRRGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET

Query:  IGASMNH
        IGASMNH
Subjt:  IGASMNH

XP_038876713.1 uncharacterized protein LOC120069103 [Benincasa hispida]

3.0e-81

85.1

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Query:  MKNPTGKHEDKNSSKSKFMKNNKHKNMKRVGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEEPHKLK
        MKNPTGK ED+N S SKFMK+ KHKNMKR+GGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVK+QNQQNERPSSSTVGLVE+     
Subjt:  MKNPTGKHEDKNSSKSKFMKNNKHKNMKRVGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEEPHKLK

Query:  SKSLRALRGRGENEMKFENQMNGRRGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET
                   ENE KFEN  NGRRGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRN+TREKMFKRTQKGQPVMKYRIEHLLET
Subjt:  SKSLRALRGRGENEMKFENQMNGRRGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET

Query:  I-GASMNH
        I GASM H
Subjt:  I-GASMNH

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K7L3 Uncharacterized protein

3.0e-79

83.09

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Query:  MKNPTGKHEDKNSSKSKFMKNNKHKNMKRVGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEEPHKLK
        MK+  GKHE  N SKSKFM NNKH N+KR+GGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHV+KYKKLVKHQNQ NERPSSSTV LVE      
Subjt:  MKNPTGKHEDKNSSKSKFMKNNKHKNMKRVGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEEPHKLK

Query:  SKSLRALRGRGENEMKFENQMNGRRGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET
                  GENE KFENQ N R GKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEE+ERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET
Subjt:  SKSLRALRGRGENEMKFENQMNGRRGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET

Query:  IGASMNH
        IGAS NH
Subjt:  IGASMNH

A0A1S3BRH3 uncharacterized protein LOC103492733

2.2e-82

85.02

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Query:  MKNPTGKHEDKNSSKSKFMKNNKHKNMKRVGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEEPHKLK
        MKNP GKHE KN SKSKFM  NKH N+KR+GGK LSLEAFANAKSTTDYYNPALIKKQREFYKNAKHV+KYKKLVKHQNQQNERPSSSTVGLVE      
Subjt:  MKNPTGKHEDKNSSKSKFMKNNKHKNMKRVGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEEPHKLK

Query:  SKSLRALRGRGENEMKFENQMNGRRGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET
                  GENE KFENQ NGR GKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEE+ERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET
Subjt:  SKSLRALRGRGENEMKFENQMNGRRGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET

Query:  IGASMNH
        IGAS NH
Subjt:  IGASMNH

A0A6J1GP14 uncharacterized protein LOC111455827

3.1e-76

81.07

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Query:  MKNPTGKHEDKNSSKSKFMKNNKHKNMKRVGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEEPHKLK
        MK  TG+ E +N  KS FMKN KHKNMKR+GGKGLSLEAFAN KSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQN  NERPSSSTVGLVE      
Subjt:  MKNPTGKHEDKNSSKSKFMKNNKHKNMKRVGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEEPHKLK

Query:  SKSLRALRGRGENEMKFENQMNGRRGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET
                  GEN  K ENQ NGRRGKERNKG+PSLQ LYERKHEEKEKARMEKEAIIAAKKEEQERAKARRN+TREKM KRTQKGQPVMKYRIEHLL+T
Subjt:  SKSLRALRGRGENEMKFENQMNGRRGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET

Query:  IGASMN
        IGASMN
Subjt:  IGASMN

A0A6J1H9B9 uncharacterized protein LOC111461241

5.1e-79

82.13

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Query:  MKNPTGKHEDKNSSKSKFMKNNKHKNMKRVGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEEPHKLK
        MKN  GK E++  SKSKFMK NKHKNMKR+GGKG S +AFANAKSTTDYYNPALIKKQREFYKNAKHV+KYKKLVKHQN QNERPSSS+VGLVE      
Subjt:  MKNPTGKHEDKNSSKSKFMKNNKHKNMKRVGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEEPHKLK

Query:  SKSLRALRGRGENEMKFENQMNGRRGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET
                  GENEMKFEN+ NGRRG ERNKGVPSLQ LYERKH+EKEKARMEKEAIIAAKKEE+ERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET
Subjt:  SKSLRALRGRGENEMKFENQMNGRRGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET

Query:  IGASMNH
        IGASMNH
Subjt:  IGASMNH

A0A6J1KV89 uncharacterized protein LOC111497895

3.3e-78

81.16

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Query:  MKNPTGKHEDKNSSKSKFMKNNKHKNMKRVGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEEPHKLK
        MKN  GK E++  SKSKF K NKHKNMKR+GGKG S +AFANAKSTTDYYNPA IKKQREFYKNAKHV+KYKKLVKHQN QNERPS+STVGLVE      
Subjt:  MKNPTGKHEDKNSSKSKFMKNNKHKNMKRVGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEEPHKLK

Query:  SKSLRALRGRGENEMKFENQMNGRRGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET
                  GENEMKFEN+ NGRRG ERNKGVPSLQ LYERKH+EKEKARMEKEAIIAAKKEE+ERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET
Subjt:  SKSLRALRGRGENEMKFENQMNGRRGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLET

Query:  IGASMNH
        IGASMNH
Subjt:  IGASMNH

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G03180.1 CONTAINS InterPro DOMAIN/s: rRNA processing (InterPro:IPR013730); Has 898 Blast hits to 687 proteins in 142 species: Archae - 2; Bacteria - 28; Metazoa - 200; Fungi - 99; Plants - 63; Viruses - 0; Other Eukaryotes - 506 (source: NCBI BLink).

3.9e-31

44.5

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Query:  KHEDKNSSKSKFMKNNKHKNMKRVGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQN--QQNERPSSSTVGLVEEPHKLKSKSL
        ++ D  + KSK  +  K KNM+R+GG GLSL+ FAN KS  + YNP+LIKKQ+EFYKNAK+VSK++K +K QN   +NE   +S VG  ++  K K KS 
Subjt:  KHEDKNSSKSKFMKNNKHKNMKRVGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQN--QQNERPSSSTVGLVEEPHKLKSKSL

Query:  RALRGRGENEMKFENQMNGRRGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS
                                 NK +  ++ LY++  EE E+ R E+EA+  AKKE +E A++RR   + KM ++T+ GQPVMKYRIEHLLE+I  S
Subjt:  RALRGRGENEMKFENQMNGRRGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAGAATCCCACTGGAAAACACGAAGATAAGAATAGCTCTAAATCGAAATTCATGAAGAACAACAAACACAAGAACATGAAACGGGTGGGTGGGAAGGGCCTTTCGCT
CGAGGCGTTCGCAAATGCCAAATCAACTACCGATTACTATAATCCAGCTTTGATAAAAAAGCAAAGAGAGTTCTATAAGAATGCTAAACATGTCAGCAAGTATAAGAAGT
TAGTAAAGCATCAGAATCAACAGAATGAGAGGCCTTCTAGCTCTACTGTTGGACTTGTCGAGGAACCCCATAAACTCAAATCGAAATCGTTGAGAGCTTTGCGAGGAAGA
GGTGAAAATGAAATGAAATTCGAGAATCAGATGAACGGTAGACGTGGGAAAGAAAGGAATAAAGGCGTACCTAGTCTCCAGGCACTGTATGAGAGAAAGCATGAAGAGAA
AGAGAAAGCAAGAATGGAGAAAGAAGCCATTATCGCTGCGAAAAAGGAAGAACAAGAAAGGGCTAAAGCTAGACGAAACTCCACAAGAGAAAAAATGTTCAAAAGGACAC
AAAAAGGTCAGCCAGTTATGAAGTACAGAATTGAGCATCTTTTGGAGACTATTGGAGCCTCAATGAACCACTGA

mRNA sequence

Show/hide mRNA sequence

AATAATTTGAAACCGTCTCCTCCCTTTTCTTCTCCGTTTTTGACCTAATTCTTCTCGGTTTCATTCAATCTCTCAGTAAACAATGAAGAATCCCACTGGAAAACACGAAG
ATAAGAATAGCTCTAAATCGAAATTCATGAAGAACAACAAACACAAGAACATGAAACGGGTGGGTGGGAAGGGCCTTTCGCTCGAGGCGTTCGCAAATGCCAAATCAACT
ACCGATTACTATAATCCAGCTTTGATAAAAAAGCAAAGAGAGTTCTATAAGAATGCTAAACATGTCAGCAAGTATAAGAAGTTAGTAAAGCATCAGAATCAACAGAATGA
GAGGCCTTCTAGCTCTACTGTTGGACTTGTCGAGGAACCCCATAAACTCAAATCGAAATCGTTGAGAGCTTTGCGAGGAAGAGGTGAAAATGAAATGAAATTCGAGAATC
AGATGAACGGTAGACGTGGGAAAGAAAGGAATAAAGGCGTACCTAGTCTCCAGGCACTGTATGAGAGAAAGCATGAAGAGAAAGAGAAAGCAAGAATGGAGAAAGAAGCC
ATTATCGCTGCGAAAAAGGAAGAACAAGAAAGGGCTAAAGCTAGACGAAACTCCACAAGAGAAAAAATGTTCAAAAGGACACAAAAAGGTCAGCCAGTTATGAAGTACAG
AATTGAGCATCTTTTGGAGACTATTGGAGCCTCAATGAACCACTGATGCCTTTCGTTGTTTTCACTTTACTTTGTAGAAGAATTTTTTGTCTCTTTAGGAATGTATATTT
CTCTTGTACCTTTTAGTTTGCTTCAATAGACAATCAAATGATTCCAGTGTATTACAATCTATAATCTAATCTACCATATGCTTAACATTATCATATTGCCGTCCATTTGA
AAGTGTTTGGATGCAAGTCTTAAAGCTTTTAGTTGTATATTCAATGACAAAAGATTCTTTTCTCTTA

Protein sequence

Show/hide protein sequence

MKNPTGKHEDKNSSKSKFMKNNKHKNMKRVGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEEPHKLKSKSLRALRGR
GENEMKFENQMNGRRGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASMNH

Lsi02G023530 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome