; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G023730 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G023730
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionnuclear transcription factor Y subunit B-1
Genome locationchr02:30411328..30411801
RNA-Seq ExpressionLsi02G023730
SyntenyLsi02G023730
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003956 - Transcription factor, NFYB/HAP3, conserved site
IPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold
IPR027113 - Transcription factor NFYB/HAP3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0068030.1 nuclear transcription factor Y subunit B-1 [Cucumis melo var. makuwa]7.7e-7494.81Show/hide
Query:  MPERLVEFKYDF----SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTV
        MPER VEFKYDF    SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTV
Subjt:  MPERLVEFKYDF----SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTV

Query:  NGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNSNNNNHD
        NGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNN+NNNN++
Subjt:  NGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNSNNNNHD

XP_008451614.1 PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo]1.2e-7795Show/hide
Query:  MDENTGMPERLVEFKYDF----SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MDENTGMPER VEFKYDF    SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDENTGMPERLVEFKYDF----SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNSNNNNHD
        EKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNN+NNNN++
Subjt:  EKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNSNNNNHD

XP_011659350.1 nuclear transcription factor Y subunit B-5 [Cucumis sativus]5.7e-7794.94Show/hide
Query:  MDENTGMPERLVEFKYDF----SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MDENTGMPER +EFKYDF    SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDENTGMPERLVEFKYDF----SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNSNNNN
        EKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNN+N+NNNN
Subjt:  EKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNSNNNN

XP_022991512.1 nuclear transcription factor Y subunit B-1 [Cucurbita maxima]7.2e-7290.79Show/hide
Query:  MDENTGMPERLVEFKYDFSS----GVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MD+NT MPERLVEFKYDF++    GVGGSTGGSSEEAG+G+GG VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDENTGMPERLVEFKYDFSS----GVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNN
        EKRKTVNGDDICCALATLGFDDYAEPLRRYL+RYR++EGERAQQNKGCCNNN
Subjt:  EKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNN

XP_038876756.1 nuclear transcription factor Y subunit B-1-like [Benincasa hispida]8.3e-7696.08Show/hide
Query:  MDENTGMPERLVEFKYDFS----SGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MDENTGMPERLVEFKYDF+    SGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDENTGMPERLVEFKYDFS----SGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNN
        EKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYR+MEGERAQQNKGCCNNNN
Subjt:  EKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNN

TrEMBL top hitse value%identityAlignment
A0A0A0K954 CBFD_NFYB_HMF domain-containing protein2.8e-7794.94Show/hide
Query:  MDENTGMPERLVEFKYDF----SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MDENTGMPER +EFKYDF    SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDENTGMPERLVEFKYDF----SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNSNNNN
        EKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNN+N+NNNN
Subjt:  EKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNSNNNN

A0A1S3BT19 nuclear transcription factor Y subunit B-15.6e-7895Show/hide
Query:  MDENTGMPERLVEFKYDF----SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MDENTGMPER VEFKYDF    SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDENTGMPERLVEFKYDF----SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNSNNNNHD
        EKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNN+NNNN++
Subjt:  EKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNSNNNNHD

A0A5A7VLD2 Nuclear transcription factor Y subunit B-13.7e-7494.81Show/hide
Query:  MPERLVEFKYDF----SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTV
        MPER VEFKYDF    SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTV
Subjt:  MPERLVEFKYDF----SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTV

Query:  NGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNSNNNNHD
        NGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNN+NNNN++
Subjt:  NGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNSNNNNHD

A0A6J1GM85 nuclear transcription factor Y subunit B-1-like6.0e-7287.65Show/hide
Query:  MDENTGMPERLVEFKYDF-----SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCH
        MD+NT MPERLVEFKYDF     S GVGGSTGGSSEEAG+G+GG VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCH
Subjt:  MDENTGMPERLVEFKYDF-----SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCH

Query:  KEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNSNNNNHDA
        KEKRKTVNGDDICCALATLGFDDYAEPLRRYL+RYR++EGERAQQNKGCC     NNN HDA
Subjt:  KEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNSNNNNHDA

A0A6J1JM11 nuclear transcription factor Y subunit B-13.5e-7290.79Show/hide
Query:  MDENTGMPERLVEFKYDFSS----GVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MD+NT MPERLVEFKYDF++    GVGGSTGGSSEEAG+G+GG VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDENTGMPERLVEFKYDFSS----GVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNN
        EKRKTVNGDDICCALATLGFDDYAEPLRRYL+RYR++EGERAQQNKGCCNNN
Subjt:  EKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNN

SwissProt top hitse value%identityAlignment
O82248 Nuclear transcription factor Y subunit B-54.8e-4284.69Show/hide
Query:  VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER
        +VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+
Subjt:  VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER

P25209 Nuclear transcription factor Y subunit B3.2e-3864.41Show/hide
Query:  SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDD
        S G GG +  S    G G GG V+EQDR LPIAN+ RIMK+ +P N KI+K+AKET+QECVSEFISF+T EASDKC +EKRKT+NGDD+  A+ATLGF+D
Subjt:  SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDD

Query:  YAEPLRRYLVRYRDMEGE
        Y EPL+ YL +YR+MEG+
Subjt:  YAEPLRRYLVRYRDMEGE

Q60EQ4 Nuclear transcription factor Y subunit B-31.2e-3764.91Show/hide
Query:  GGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP
        G   GG     G G GG V+EQDR LPIAN+ RIMK+ +P N KI+K+AKET+QECVSEFISF+T EASDKC +EKRKT+NGDD+  A+ATLGF+DY EP
Subjt:  GGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP

Query:  LRRYLVRYRDMEGE
        L+ YL +YR+MEG+
Subjt:  LRRYLVRYRDMEGE

Q9FGJ3 Nuclear transcription factor Y subunit B-22.1e-3769.3Show/hide
Query:  STGGSSEEAGNGVGGV-VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPL
        S GG +    NG   +  +EQDR LPIANV RIMK+ LP NAKISK+AKETMQECVSEFISFVTGEASDKC KEKRKT+NGDD+  A+ TLGF+DY EPL
Subjt:  STGGSSEEAGNGVGGV-VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPL

Query:  RRYLVRYRDMEGER
        + YL R+R++EGER
Subjt:  RRYLVRYRDMEGER

Q9SIT9 Nuclear transcription factor Y subunit B-71.2e-3764.52Show/hide
Query:  SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDD
        S GV  +  GS     N      KEQDR LPIANVGRIMK++LP N KISK+AKET+QECVSEFISFVTGEASDKC +EKRKT+NGDDI  A+ TLGF+D
Subjt:  SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDD

Query:  YAEPLRRYLVRYRDMEGERAQQNK
        Y  PL+ YL +YRD EGE+    K
Subjt:  YAEPLRRYLVRYRDMEGERAQQNK

Arabidopsis top hitse value%identityAlignment
AT2G13570.1 nuclear factor Y, subunit B78.6e-3964.52Show/hide
Query:  SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDD
        S GV  +  GS     N      KEQDR LPIANVGRIMK++LP N KISK+AKET+QECVSEFISFVTGEASDKC +EKRKT+NGDDI  A+ TLGF+D
Subjt:  SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDD

Query:  YAEPLRRYLVRYRDMEGERAQQNK
        Y  PL+ YL +YRD EGE+    K
Subjt:  YAEPLRRYLVRYRDMEGERAQQNK

AT2G47810.1 nuclear factor Y, subunit B53.4e-4384.69Show/hide
Query:  VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER
        +VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+
Subjt:  VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER

AT3G53340.1 nuclear factor Y, subunit B104.3e-3863.49Show/hide
Query:  SGVGGSTGGSSEEAGNGVGGV--VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFD
        S  GG  GGS E  G+       V+EQDR LPIAN+ RIMK+ LP N KI+K+AKETMQECVSEFISFVT EASDKC +EKRKT+NGDD+  A+ATLGF+
Subjt:  SGVGGSTGGSSEEAGNGVGGV--VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFD

Query:  DYAEPLRRYLVRYRDMEGERAQQNKG
        DY +PL+ YL+RYR+MEG+     KG
Subjt:  DYAEPLRRYLVRYRDMEGERAQQNKG

AT4G14540.1 nuclear factor Y, subunit B31.2e-3766.36Show/hide
Query:  GSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYL
        G  ++ GN      +EQDR LPIANV RIMK+ LP NAKISK+AKET+QECVSEFISF+TGEASDKC +EKRKT+NGDD+  A+ TLGF+DY EPL+ YL
Subjt:  GSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYL

Query:  VRYRDMEGER
         +YR++EGE+
Subjt:  VRYRDMEGER

AT5G47640.1 nuclear factor Y, subunit B21.5e-3869.3Show/hide
Query:  STGGSSEEAGNGVGGV-VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPL
        S GG +    NG   +  +EQDR LPIANV RIMK+ LP NAKISK+AKETMQECVSEFISFVTGEASDKC KEKRKT+NGDD+  A+ TLGF+DY EPL
Subjt:  STGGSSEEAGNGVGGV-VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPL

Query:  RRYLVRYRDMEGER
        + YL R+R++EGER
Subjt:  RRYLVRYRDMEGER


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGAAAACACAGGCATGCCAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCAGCGGTGTTGGCGGTAGCACCGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGT
TGGCGGGGTTGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTAGGAAGGATCATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAA
CTATGCAAGAATGCGTGTCGGAGTTCATCAGTTTTGTGACGGGCGAGGCATCGGATAAGTGCCATAAAGAGAAGAGAAAGACTGTCAATGGTGATGATATTTGCTGTGCT
TTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAAGGGGAGAGAGCTCAACAAAATAAGGGATGTTGCAATAA
TAATAATAGTAACAATAATAATCATGATGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGAAAACACAGGCATGCCAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCAGCGGTGTTGGCGGTAGCACCGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGT
TGGCGGGGTTGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTAGGAAGGATCATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAA
CTATGCAAGAATGCGTGTCGGAGTTCATCAGTTTTGTGACGGGCGAGGCATCGGATAAGTGCCATAAAGAGAAGAGAAAGACTGTCAATGGTGATGATATTTGCTGTGCT
TTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAAGGGGAGAGAGCTCAACAAAATAAGGGATGTTGCAATAA
TAATAATAGTAACAATAATAATCATGATGCATGA
Protein sequenceShow/hide protein sequence
MDENTGMPERLVEFKYDFSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCA
LATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNSNNNNHDA