CuGenDBv2

Gene ID	Lsi02G023950
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Nucleolar protein 16
Genome location	chr02:30629442..30631212
RNA-Seq Expression	Lsi02G023950
Synteny	Lsi02G023950
Gene Ontology terms	GO:0042273 - ribosomal large subunit biogenesis (biological process) GO:0005730 - nucleolus (cellular component)
InterPro domains	IPR019002 - Ribosome biogenesis protein Nop16

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008451586.1 PREDICTED: uncharacterized protein LOC103492822 [Cucumis melo]

3.7e-94

91.75

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Query:  MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDP
        MGRSRRKY++SRPKVKVGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDPTWDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESDSLQVPP    SDDP
Subjt:  MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDP

Query:  ESVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRK
        +SVLDSSGSDVEEDDLKTALGKKRKDGKSA LQPLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL RK
Subjt:  ESVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRK

XP_022954094.1 uncharacterized protein LOC111456462 [Cucurbita moschata]

7.6e-95

92.75

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Query:  MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDP
        MGRSRRKY+RSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP WDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESD LQVPPS P SDDP
Subjt:  MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDP

Query:  ESVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR
        +SVLDSSGSDVEEDDLKTALGKKR+DGKSA L+PLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL R
Subjt:  ESVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR

XP_022991747.1 uncharacterized protein LOC111488281 [Cucurbita maxima]

6.8e-96

93.78

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Query:  MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDP
        MGRSRRKY+RSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP WDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPS P SDDP
Subjt:  MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDP

Query:  ESVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR
        +SVLDSSGSDVEEDDLKTALGKKRKDGKSA L+PLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL R
Subjt:  ESVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR

XP_023547523.1 uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo]

2.6e-95

93.26

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Query:  MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDP
        MGRSRRKY+RSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP WDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPS P SDDP
Subjt:  MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDP

Query:  ESVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR
        +SVLDSSGSDVEEDDLKTALGKKRKDGKSA L+PLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRYH CLDKNPLIL R
Subjt:  ESVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR

XP_038898931.1 nucleolar protein 16 [Benincasa hispida]

1.6e-100

95.9

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Query:  MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDP
        MGRSRRKY+RSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWD+KA VIHNYKSFGV+SNPNLLSVRSRTDHIVESDSLQVPPSQP SD+P
Subjt:  MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDP

Query:  ESVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRKK
        +SVLDSSGSDVEEDDLKTALGKKRKDGKSA LQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRKK
Subjt:  ESVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRKK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAV9 Nucleolar protein 16

7.6e-93

89.74

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Query:  MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDP
        MGRSRRKY++SRPKVKVGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDPTWDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESDSLQVPP    SDDP
Subjt:  MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDP

Query:  ESVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRKK
        ++VLDSSGSDVEEDDLKTALGKKRKDGKSA LQPLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSVATLEKLCKRY+SCLD NPLIL RK+
Subjt:  ESVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRKK

A0A1S3BSM4 Nucleolar protein 16

1.8e-94

91.75

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Query:  MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDP
        MGRSRRKY++SRPKVKVGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDPTWDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESDSLQVPP    SDDP
Subjt:  MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDP

Query:  ESVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRK
        +SVLDSSGSDVEEDDLKTALGKKRKDGKSA LQPLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL RK
Subjt:  ESVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRK

A0A5A7VLA5 Nucleolar protein 16

1.8e-94

91.75

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Query:  MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDP
        MGRSRRKY++SRPKVKVGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDPTWDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESDSLQVPP    SDDP
Subjt:  MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDP

Query:  ESVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRK
        +SVLDSSGSDVEEDDLKTALGKKRKDGKSA LQPLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL RK
Subjt:  ESVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRK

A0A6J1GRW5 Nucleolar protein 16

3.7e-95

92.75

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Query:  MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDP
        MGRSRRKY+RSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP WDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESD LQVPPS P SDDP
Subjt:  MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDP

Query:  ESVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR
        +SVLDSSGSDVEEDDLKTALGKKR+DGKSA L+PLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL R
Subjt:  ESVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR

A0A6J1JMQ4 Nucleolar protein 16

3.3e-96

93.78

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Query:  MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDP
        MGRSRRKY+RSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP WDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPS P SDDP
Subjt:  MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDP

Query:  ESVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR
        +SVLDSSGSDVEEDDLKTALGKKRKDGKSA L+PLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL R
Subjt:  ESVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G02870.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

6.6e-65

63.59

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Query:  MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPS-QPSSDD
        M RSRRKY+ SR KV+V LPK++PN+FKP+F  PPKLR+L+    ++ P WD++ASVI NYKSFGV+SNPNLL +R+RTDH+++ DSL VPP  +P +DD
Subjt:  MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPS-QPSSDD

Query:  P---ESVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL
        P   E     SGS++EEDDLKTALGK+RKDGKSA LQPLTT+QR H+ RL+EK+GDD E M+ D KLNSMQHSVATL KLC RY    DKNP+++
Subjt:  P---ESVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGAAGGTCTCGAAGAAAGTACCAGAGATCTCGGCCAAAAGTCAAGGTCGGCTTGCCCAAAAGACACCCCAATGTCTTCAAGCCATCCTTCTGCATGCCGCCGAAGCT
CCGCTCTTTGCTCGCCGAACAATTTGAAGAAGATCCAACATGGGACGAGAAAGCAAGTGTCATTCACAACTATAAATCCTTCGGTGTTCTTTCTAATCCTAATTTGCTCA
GTGTTCGTTCCCGCACTGATCACATCGTTGAGAGCGACTCTCTCCAGGTCCCGCCGTCTCAGCCGTCTTCTGATGACCCTGAGTCCGTGCTTGATTCTTCCGGTAGCGAT
GTTGAAGAGGACGATTTGAAAACAGCATTGGGAAAGAAGCGCAAAGATGGGAAATCTGCATCTCTACAACCATTGACCACGATTCAGCGTGTTCATGTCGGTAGGCTAAT
CGAGAAATATGGAGATGATTACGAGAGGATGTTTATGGATACAAAGCTGAACTCAATGCAGCATTCTGTTGCCACTCTGGAGAAACTATGCAAAAGATATCACAGTTGTT
TAGATAAGAATCCATTGATATTGATTCGTAAAAAATGA

mRNA sequence

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TCGGTTCGGTTATGTTTTCTAAACTACCGAACCGGAAAAACTCGGTTCCAAATTTTTTCAAAACCCCCTCAGGAAATAAACCCTACGAAATCCCAATGAGCTCTTCATCT
TCCACATAGTAAACCCTAGCCACCAGTTTTCCTTTCTCCTTCCGATTCACAGAGACATTTAGAGAGATGGGAAGGTCTCGAAGAAAGTACCAGAGATCTCGGCCAAAAGT
CAAGGTCGGCTTGCCCAAAAGACACCCCAATGTCTTCAAGCCATCCTTCTGCATGCCGCCGAAGCTCCGCTCTTTGCTCGCCGAACAATTTGAAGAAGATCCAACATGGG
ACGAGAAAGCAAGTGTCATTCACAACTATAAATCCTTCGGTGTTCTTTCTAATCCTAATTTGCTCAGTGTTCGTTCCCGCACTGATCACATCGTTGAGAGCGACTCTCTC
CAGGTCCCGCCGTCTCAGCCGTCTTCTGATGACCCTGAGTCCGTGCTTGATTCTTCCGGTAGCGATGTTGAAGAGGACGATTTGAAAACAGCATTGGGAAAGAAGCGCAA
AGATGGGAAATCTGCATCTCTACAACCATTGACCACGATTCAGCGTGTTCATGTCGGTAGGCTAATCGAGAAATATGGAGATGATTACGAGAGGATGTTTATGGATACAA
AGCTGAACTCAATGCAGCATTCTGTTGCCACTCTGGAGAAACTATGCAAAAGATATCACAGTTGTTTAGATAAGAATCCATTGATATTGATTCGTAAAAAATGAATGCTC
CTTCATCTTTCAAATTGTTTTGTAACAAGAGTTGAAAACCAGATAAGGTATGATCATGAAATTTTATTGAGGAATATTGTTTTGAATCCAAATGTATGAGGCTTGAAAGA
TGAATCATTCTCTTGCTTGCTGCAGTTTTATTCCTTTACAGGAAATGCTCATAATTCTAATTCATGTTTAGTTGCTGGCATCTAGGGAATTTATCATTTTAGGGGG

Protein sequence

Show/hide protein sequence

MGRSRRKYQRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPSSDDPESVLDSSGSD
VEEDDLKTALGKKRKDGKSASLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRKK

Lsi02G023950 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome