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Lsi02G024480 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G024480
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationchr02:31039014..31039814
RNA-Seq ExpressionLsi02G024480
SyntenyLsi02G024480
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046672.1 extensin-2 [Cucumis melo var. makuwa]2.3e-4688.19Show/hide
Query:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCPPP--PPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPP
        MAN I IFLTFFLFSL KFSLLS A+ VAKDQVGCSMCS CDNPCQLPPP PPPPVV+CPPP  PPPPPSPPPPLPTSQCPPPPSPPSCD CVYPSPPPP
Subjt:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCPPP--PPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPP

Query:  SSVQPYTPTDGGQFPGLAPPPPNPILP
        SSVQPY P+DGGQFPG+APPPPNPILP
Subjt:  SSVQPYTPTDGGQFPGLAPPPPNPILP

XP_022953998.1 leucine-rich repeat extensin-like protein 3 [Cucurbita moschata]4.4e-4276.71Show/hide
Query:  LYLNFLNHLIVSFQFTSMANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCP----PPPPPPPSPPPPLPTSQCP
        LY++F +    SF FTSMA+L SIFLT FL SLSKFS LS  TV A+DQVGCSMC++CDNPCQLPP  PPP +VDCP    PPPPPPPSPPPPL T +CP
Subjt:  LYLNFLNHLIVSFQFTSMANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCP----PPPPPPPSPPPPLPTSQCP

Query:  PPPSPPSCDTCVYPSPPPPSSVQPYTPTDGGQFPGLAPPPPNPILP
        PPPSPPSCD CVYPSPPPPSS+QPYTPTDGGQ+PGLAPPPPNPILP
Subjt:  PPPSPPSCDTCVYPSPPPPSSVQPYTPTDGGQFPGLAPPPPNPILP

XP_022991777.1 leucine-rich repeat extensin-like protein 3 [Cucurbita maxima]1.4e-4082.03Show/hide
Query:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPP---VVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPP
        MA+L SIFLT FLFSLSKFS LS ATV A+DQVGCSMCS+CDNPCQLPPP PPPP   VVDCPPPP P   PPPPLP  +CPPPPSPPSCD CVYPSPPP
Subjt:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPP---VVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPP

Query:  PSSVQPYTPTDGGQFPGLAPPPPNPILP
        PSS+QPYTPTDGGQ+PG+APPPPNPILP
Subjt:  PSSVQPYTPTDGGQFPGLAPPPPNPILP

XP_023514546.1 leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo]1.2e-3470.4Show/hide
Query:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPPSS
        M NL+SI+ TF LF+LSKFS LS AT VAKDQVGCSMCS+CDNPCQLPPP PPP                   PTSQCPPPP PPSC TC++PSP PPSS
Subjt:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPPSS

Query:  VQPYTPTDGGQFPGLAPPPPNPILP
        VQPY P DGGQFPGLAPPPPNPILP
Subjt:  VQPYTPTDGGQFPGLAPPPPNPILP

XP_023549397.1 leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo]9.8e-4284.8Show/hide
Query:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPPSS
        MA+L SIFLT FL SLSKFS LS ATV A+DQVGCSMCS+CDNPCQLPP  PPP +VDC PPPPPPPSPPPPLPT +CPPPPSPPSCD CVYPSPPPPSS
Subjt:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPPSS

Query:  VQPYTPTDGGQFPGLAPPPPNPILP
        +QPYTPTDGGQ+PGLAPPPPNPILP
Subjt:  VQPYTPTDGGQFPGLAPPPPNPILP

TrEMBL top hitse value%identityAlignment
A0A0A0K5N4 Uncharacterized protein1.3e-4789.76Show/hide
Query:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCPPPP--PPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPP
        MANLISIFLTFFL SL+KFSLLS AT VAKDQVGCSMCSTCDNPCQLPPP PPPPVV+CPPPP  PPPPSPPPPLPTSQCPPPPSPPSCD CVYPSPPPP
Subjt:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCPPPP--PPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPP

Query:  SSVQPYTPTDGGQFPGLAPPPPNPILP
        SSVQPY P+ GGQFPG+APPPPNPILP
Subjt:  SSVQPYTPTDGGQFPGLAPPPPNPILP

A0A5D3D2P5 Extensin-21.1e-4688.19Show/hide
Query:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCPPP--PPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPP
        MAN I IFLTFFLFSL KFSLLS A+ VAKDQVGCSMCS CDNPCQLPPP PPPPVV+CPPP  PPPPPSPPPPLPTSQCPPPPSPPSCD CVYPSPPPP
Subjt:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCPPP--PPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPP

Query:  SSVQPYTPTDGGQFPGLAPPPPNPILP
        SSVQPY P+DGGQFPG+APPPPNPILP
Subjt:  SSVQPYTPTDGGQFPGLAPPPPNPILP

A0A6J1GPW6 leucine-rich repeat extensin-like protein 32.1e-4276.71Show/hide
Query:  LYLNFLNHLIVSFQFTSMANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCP----PPPPPPPSPPPPLPTSQCP
        LY++F +    SF FTSMA+L SIFLT FL SLSKFS LS  TV A+DQVGCSMC++CDNPCQLPP  PPP +VDCP    PPPPPPPSPPPPL T +CP
Subjt:  LYLNFLNHLIVSFQFTSMANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCP----PPPPPPPSPPPPLPTSQCP

Query:  PPPSPPSCDTCVYPSPPPPSSVQPYTPTDGGQFPGLAPPPPNPILP
        PPPSPPSCD CVYPSPPPPSS+QPYTPTDGGQ+PGLAPPPPNPILP
Subjt:  PPPSPPSCDTCVYPSPPPPSSVQPYTPTDGGQFPGLAPPPPNPILP

A0A6J1JMT5 leucine-rich repeat extensin-like protein 36.9e-4182.03Show/hide
Query:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPP---VVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPP
        MA+L SIFLT FLFSLSKFS LS ATV A+DQVGCSMCS+CDNPCQLPPP PPPP   VVDCPPPP P   PPPPLP  +CPPPPSPPSCD CVYPSPPP
Subjt:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPP---VVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPP

Query:  PSSVQPYTPTDGGQFPGLAPPPPNPILP
        PSS+QPYTPTDGGQ+PG+APPPPNPILP
Subjt:  PSSVQPYTPTDGGQFPGLAPPPPNPILP

A0A6J1KR41 glyceraldehyde-3-phosphate dehydrogenase, testis-specific-like3.1e-3370.63Show/hide
Query:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPPSS
        MANL+SI+ TF LF+LSKFS LS AT VAKDQVGCSMCS+CDNPCQLPPP PPPP   CPPPPPPP                 PPSC TCV+PSP PP+S
Subjt:  MANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPPSS

Query:  VQPYTPTDGGQFPGLA-PPPPNPILP
        VQPY P DGGQFPGLA PPPPNPILP
Subjt:  VQPYTPTDGGQFPGLA-PPPPNPILP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G16140.1 proline-rich family protein2.3e-0442.86Show/hide
Query:  IFLTFFLFSLSKFSLLSFATVVAKDQVG-CSMCSTCDNPCQLPPPSPPPPVVDCPPPPPPPPSPPPPLP-TSQCPPPPS----------PPSCDTCVYPS
        +FL FF F+ +        T+ +  Q+  C+MC++CDNPCQ P PS        PPPPP  PSPPPP P T+ CPPPPS          PP+  +  Y  
Subjt:  IFLTFFLFSLSKFSLLSFATVVAKDQVG-CSMCSTCDNPCQLPPPSPPPPVVDCPPPPPPPPSPPPPLP-TSQCPPPPS----------PPSCDTCVYPS

Query:  PPPPSSVQPY--TPTDGGQFPGLAPPPPNPILP
        PP  SS   Y   P  GG +P    PPPNPI+P
Subjt:  PPPPSSVQPY--TPTDGGQFPGLAPPPPNPILP

AT5G49280.1 hydroxyproline-rich glycoprotein family protein8.4e-0745.3Show/hide
Query:  TVVAKDQ-VGCSMCSTCDNPCQLPPPSPPPPVVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSC---DTCVYPSP---------PPP----SSVQPYTPTD
        TV +KD+ V C+MCS+CDNPC         PV   PPPP P   PPP  PT+ CPPPPSPPS     +  YP P         PPP         Y P  
Subjt:  TVVAKDQ-VGCSMCSTCDNPCQLPPPSPPPPVVDCPPPPPPPPSPPPPLPTSQCPPPPSPPSC---DTCVYPSP---------PPP----SSVQPYTPTD

Query:  GGQFPGLAPPPPNPILP
         G +P   PPPPNPI+P
Subjt:  GGQFPGLAPPPPNPILP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGAAAAACTTGAAATGAGGAGAGCTAAAATGACCATGCCTCCAAATTCTCTACCTTTATATCTCAATTTCCTCAACCATTTGATCGTCAGCTTCCAATTCACATC
AATGGCCAATCTCATCTCCATTTTCCTCACTTTCTTCCTCTTTTCACTCTCCAAATTTTCCCTTCTCTCTTTCGCTACCGTCGTCGCCAAGGATCAGGTTGGCTGTTCCA
TGTGCTCAACTTGTGACAACCCATGCCAACTCCCACCGCCGTCGCCTCCTCCACCGGTTGTTGACTGCCCTCCGCCGCCCCCTCCACCTCCATCTCCGCCACCGCCACTC
CCCACTTCCCAATGCCCTCCGCCTCCGTCGCCTCCCTCATGTGATACATGCGTCTACCCTTCTCCGCCGCCGCCGTCTTCCGTCCAGCCGTACACTCCGACCGACGGTGG
CCAATTTCCCGGCCTTGCTCCGCCGCCGCCGAACCCAATTTTACCAGAACTGAGAAATCGTTTTCTGCCGTTGAAGAGAGGTGAAAGAGGAAGAAGGGGAGATCAGAAGA
AGAAGAAGAAGGGCGTAGTTAAATCGAGAAAATTACTTGTAGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGAAAAACTTGAAATGAGGAGAGCTAAAATGACCATGCCTCCAAATTCTCTACCTTTATATCTCAATTTCCTCAACCATTTGATCGTCAGCTTCCAATTCACATC
AATGGCCAATCTCATCTCCATTTTCCTCACTTTCTTCCTCTTTTCACTCTCCAAATTTTCCCTTCTCTCTTTCGCTACCGTCGTCGCCAAGGATCAGGTTGGCTGTTCCA
TGTGCTCAACTTGTGACAACCCATGCCAACTCCCACCGCCGTCGCCTCCTCCACCGGTTGTTGACTGCCCTCCGCCGCCCCCTCCACCTCCATCTCCGCCACCGCCACTC
CCCACTTCCCAATGCCCTCCGCCTCCGTCGCCTCCCTCATGTGATACATGCGTCTACCCTTCTCCGCCGCCGCCGTCTTCCGTCCAGCCGTACACTCCGACCGACGGTGG
CCAATTTCCCGGCCTTGCTCCGCCGCCGCCGAACCCAATTTTACCAGAACTGAGAAATCGTTTTCTGCCGTTGAAGAGAGGTGAAAGAGGAAGAAGGGGAGATCAGAAGA
AGAAGAAGAAGGGCGTAGTTAAATCGAGAAAATTACTTGTAGACTAA
Protein sequenceShow/hide protein sequence
MDEKLEMRRAKMTMPPNSLPLYLNFLNHLIVSFQFTSMANLISIFLTFFLFSLSKFSLLSFATVVAKDQVGCSMCSTCDNPCQLPPPSPPPPVVDCPPPPPPPPSPPPPL
PTSQCPPPPSPPSCDTCVYPSPPPPSSVQPYTPTDGGQFPGLAPPPPNPILPELRNRFLPLKRGERGRRGDQKKKKKGVVKSRKLLVD