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Lsi02G024520 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G024520
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionZinc finger protein 6-like
Genome locationchr02:31067414..31067941
RNA-Seq ExpressionLsi02G024520
SyntenyLsi02G024520
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009736 - cytokinin-activated signaling pathway (biological process)
GO:0009740 - gibberellic acid mediated signaling pathway (biological process)
GO:0010090 - trichome morphogenesis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily
IPR044299 - Zinc finger protein GIS3/ZFP5/ZFP6


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046676.1 zinc finger protein 6-like [Cucumis melo var. makuwa]2.2e-7788.27Show/hide
Query:  MSNQNPSSSILKLFGFPLVEHDDNPPETPDGGDGGGIDT--NSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHAATLRPPSLYSSVFP
        MSN NP SSILKLFGFPLVEHDDNPPETPD G GGG DT  NSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHAA LRPPSLYSSVFP
Subjt:  MSNQNPSSSILKLFGFPLVEHDDNPPETPDGGDGGGIDT--NSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHAATLRPPSLYSSVFP

Query:  ANIG--GGRAGGGSSRILPRNGNGYFV-AAACGGVSAASGRWMFGNSGEGKMENSGCKLGGEKGLCVDLHLKLSPSNSS
        +N G  GG  GGG SRILPRNGNGYF   AA GGVSA+SGRWMFGNS EGKMENSGCKLGGEKGLCVDLHLKLSPSNSS
Subjt:  ANIG--GGRAGGGSSRILPRNGNGYFV-AAACGGVSAASGRWMFGNSGEGKMENSGCKLGGEKGLCVDLHLKLSPSNSS

KAG7025578.1 Zinc finger protein 6, partial [Cucurbita argyrosperma subsp. argyrosperma]4.7e-5671.74Show/hide
Query:  MSNQNPSSSILKLFGFPLVEHDDNPPETPDGGDGGGIDTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHAA-------------TL
        MSNQNP SSILKLFGFPLVEHDD PP TPDG  GGG DTNSD DRKFRCQFC RVFANSQALGGHQNAHKRERQRAKRALYFHA+              L
Subjt:  MSNQNPSSSILKLFGFPLVEHDDNPPETPDGGDGGGIDTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHAA-------------TL

Query:  RPPSLYSSVFPANIGGGRAGGGSSRILPRNGNGYFVAAACGGVSAASGRWMFGNSGEGKMENSGCKLGGEKGLCVDLHLKLSPS
        RPP  YSSVFPANIGGG  G    R LPR+ NGYF  AA GGVSA SGRWMFGNSGEG  + S   +G      VDLHLKLSPS
Subjt:  RPPSLYSSVFPANIGGGRAGGGSSRILPRNGNGYFVAAACGGVSAASGRWMFGNSGEGKMENSGCKLGGEKGLCVDLHLKLSPS

XP_008451655.1 PREDICTED: zinc finger protein 6-like [Cucumis melo]6.4e-7788.7Show/hide
Query:  MSNQNPSSSILKLFGFPLVEHDDNPPETPDGGDGGGIDT--NSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHAATLRPPSLYSSVFP
        MSN NP SSILKLFGFPLVEHDDNPPETPD G GGG DT  NSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHAA LRPPSLYSSVFP
Subjt:  MSNQNPSSSILKLFGFPLVEHDDNPPETPDGGDGGGIDT--NSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHAATLRPPSLYSSVFP

Query:  ANIGGGRAGGGSSRILPRNGNGYFV-AAACGGVSAASGRWMFGNSGEGKMENSGCKLGGEKGLCVDLHLKLSPSNSS
        +N GG   GGG SRILPRNGNGYF   AA GGVSA+SGRWMFGNS EGKMENSGCKLGGEKGLCVDLHLKLSPSNSS
Subjt:  ANIGGGRAGGGSSRILPRNGNGYFV-AAACGGVSAASGRWMFGNSGEGKMENSGCKLGGEKGLCVDLHLKLSPSNSS

XP_011659780.1 zinc finger protein 6 [Cucumis sativus]1.4e-7184.75Show/hide
Query:  MSNQNPSSSILKLFGFPLVEHDDNPPETPDGGDGGGIDTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHAATLRPPSLYSSVFPAN
        MSN NP SSILKLFGFPLVEHDDNPPETPDG  GG   T S+DDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHAA LRPPSLYSSVFP+N
Subjt:  MSNQNPSSSILKLFGFPLVEHDDNPPETPDGGDGGGIDTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHAATLRPPSLYSSVFPAN

Query:  IGGGRAGGGSSRILPR--NGNGYFV-AAACGGVSAASGRWMFGNSGEGKMENSGCKLGGEKGLCVDLHLKLSPSNSS
        IGG    GG+SRIL R  N NGYF   AA GGVSA+SGRWMFGNS EG MENSGCKLGGEKGLCVDLHLKLSPSNSS
Subjt:  IGGGRAGGGSSRILPR--NGNGYFV-AAACGGVSAASGRWMFGNSGEGKMENSGCKLGGEKGLCVDLHLKLSPSNSS

XP_038896349.1 zinc finger protein 6-like [Benincasa hispida]2.2e-7787.64Show/hide
Query:  MSNQNPSSSILKLFGFPLVEHDDNPPETPDGGDGGGIDTN-SDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHAATLRPPSLYSSVFPA
        MSNQ+PSSSILKLFGFPLVEHDDNPPETP   +  GIDTN  DDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHAA LRPPSLYS VFP 
Subjt:  MSNQNPSSSILKLFGFPLVEHDDNPPETPDGGDGGGIDTN-SDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHAATLRPPSLYSSVFPA

Query:  NIGGGRAGGGSSRILPRNGNGYFVAAAC--GGVSAASGRWMFGNSGEGKMENSGCKLGGEKGLCVDLHLKLSPSNSSN
        NIGG  AG G SRILPRNGNGYF AAA   GGVSA+SGRWMFGNSGE KMENSGCKLGGEKGLCVDLHLKLSPSNSSN
Subjt:  NIGGGRAGGGSSRILPRNGNGYFVAAAC--GGVSAASGRWMFGNSGEGKMENSGCKLGGEKGLCVDLHLKLSPSNSSN

TrEMBL top hitse value%identityAlignment
A0A0A0K5R1 C2H2-type domain-containing protein6.7e-7284.75Show/hide
Query:  MSNQNPSSSILKLFGFPLVEHDDNPPETPDGGDGGGIDTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHAATLRPPSLYSSVFPAN
        MSN NP SSILKLFGFPLVEHDDNPPETPDG  GG   T S+DDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHAA LRPPSLYSSVFP+N
Subjt:  MSNQNPSSSILKLFGFPLVEHDDNPPETPDGGDGGGIDTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHAATLRPPSLYSSVFPAN

Query:  IGGGRAGGGSSRILPR--NGNGYFV-AAACGGVSAASGRWMFGNSGEGKMENSGCKLGGEKGLCVDLHLKLSPSNSS
        IGG    GG+SRIL R  N NGYF   AA GGVSA+SGRWMFGNS EG MENSGCKLGGEKGLCVDLHLKLSPSNSS
Subjt:  IGGGRAGGGSSRILPR--NGNGYFV-AAACGGVSAASGRWMFGNSGEGKMENSGCKLGGEKGLCVDLHLKLSPSNSS

A0A1S3BSU1 zinc finger protein 6-like3.1e-7788.7Show/hide
Query:  MSNQNPSSSILKLFGFPLVEHDDNPPETPDGGDGGGIDT--NSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHAATLRPPSLYSSVFP
        MSN NP SSILKLFGFPLVEHDDNPPETPD G GGG DT  NSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHAA LRPPSLYSSVFP
Subjt:  MSNQNPSSSILKLFGFPLVEHDDNPPETPDGGDGGGIDT--NSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHAATLRPPSLYSSVFP

Query:  ANIGGGRAGGGSSRILPRNGNGYFV-AAACGGVSAASGRWMFGNSGEGKMENSGCKLGGEKGLCVDLHLKLSPSNSS
        +N GG   GGG SRILPRNGNGYF   AA GGVSA+SGRWMFGNS EGKMENSGCKLGGEKGLCVDLHLKLSPSNSS
Subjt:  ANIGGGRAGGGSSRILPRNGNGYFV-AAACGGVSAASGRWMFGNSGEGKMENSGCKLGGEKGLCVDLHLKLSPSNSS

A0A5D3D1T3 Zinc finger protein 6-like1.1e-7788.27Show/hide
Query:  MSNQNPSSSILKLFGFPLVEHDDNPPETPDGGDGGGIDT--NSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHAATLRPPSLYSSVFP
        MSN NP SSILKLFGFPLVEHDDNPPETPD G GGG DT  NSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHAA LRPPSLYSSVFP
Subjt:  MSNQNPSSSILKLFGFPLVEHDDNPPETPDGGDGGGIDT--NSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHAATLRPPSLYSSVFP

Query:  ANIG--GGRAGGGSSRILPRNGNGYFV-AAACGGVSAASGRWMFGNSGEGKMENSGCKLGGEKGLCVDLHLKLSPSNSS
        +N G  GG  GGG SRILPRNGNGYF   AA GGVSA+SGRWMFGNS EGKMENSGCKLGGEKGLCVDLHLKLSPSNSS
Subjt:  ANIG--GGRAGGGSSRILPRNGNGYFV-AAACGGVSAASGRWMFGNSGEGKMENSGCKLGGEKGLCVDLHLKLSPSNSS

A0A6J1JX90 zinc finger protein 6-like7.7e-5270.86Show/hide
Query:  SNQNPSS--SILKLFGFPLVEHDDNPPETPDGGDGGGIDTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHAATLRPPSLYSSVFPA
        +N  PS+  SILKLFGFPLVEH+   PETP+G  G   D NSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHA  LRPP LY++V+PA
Subjt:  SNQNPSS--SILKLFGFPLVEHDDNPPETPDGGDGGGIDTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHAATLRPPSLYSSVFPA

Query:  NIGGGRAGGGSSRILPRNGNGYFVAAACGGVSAASGRWMFGNSGEGKMENSGCKLGGEKGL-----CVDLHLKLS
        NIG      G SRILPR+ N YF  AA GGVSA+SGRWMF     GKME+SGCKL GEKGL      VDLHLKL+
Subjt:  NIGGGRAGGGSSRILPRNGNGYFVAAACGGVSAASGRWMFGNSGEGKMENSGCKLGGEKGL-----CVDLHLKLS

A0A6J1KTC7 zinc finger protein GIS3-like3.3e-5572.53Show/hide
Query:  MSNQNPSSSILKLFGFPLVEHDDNPPETPDGGDGGGIDTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFH------AATLRPPSLYS
        MSNQNP S+ILKLFGFPLVEHDD PP TPDG  GGG DTNSD DRKFRCQFC RVFANSQALGGHQNAHKRERQRAKRALYFH      AA LRPP  YS
Subjt:  MSNQNPSSSILKLFGFPLVEHDDNPPETPDGGDGGGIDTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFH------AATLRPPSLYS

Query:  SVFPANIGGGRAGGGSSRILPRNGNGYFVAAACGGVSAASGRWMFGNSGEGKMENSGCKLGGEKGL-----CVDLHLKLSPS
        SVFPA+IGGG  G    R LPR+ +GYF  AA GGVSA SGRWMFGNSGE          GGEKG       VDLHLKLSPS
Subjt:  SVFPANIGGGRAGGGSSRILPRNGNGYFVAAACGGVSAASGRWMFGNSGEGKMENSGCKLGGEKGL-----CVDLHLKLSPS

SwissProt top hitse value%identityAlignment
P93751 Zinc finger protein 88.5e-0863.41Show/hide
Query:  DTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKR
        D +++++R+F C +C R F  SQALGGHQNAHKRERQ AKR
Subjt:  DTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKR

Q39264 Zinc finger protein 52.2e-0843.59Show/hide
Query:  SNQNPSSSILKLFGFPLVEHDDNPPETPDGGDGGGIDTNS-DDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKR
        S+ + S   +KLFGF L+     P  T         +T S    ++  CQ+C + FANSQALGGHQNAHK+ER + KR
Subjt:  SNQNPSSSILKLFGFPLVEHDDNPPETPDGGDGGGIDTNS-DDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKR

Q39265 Zinc finger protein 64.8e-1154.05Show/hide
Query:  SSILKLFGFPLVEHD--DNPPETPDGGDGGGIDTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRA
        +S LKLFG  L+E     N    P  G G G      + RK+ CQ+C R FANSQALGGHQNAHK+ERQ  KRA
Subjt:  SSILKLFGFPLVEHD--DNPPETPDGGDGGGIDTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRA

Q9C9H1 Zinc finger protein GIS32.0e-0942.11Show/hide
Query:  SSSILKLFGFPLVEHDD-------------NP-----PETPDGGDGGGIDT----NSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRA
        ++S LKLFGF +   +D             +P     P    G  GGG+ +        +RK+ CQ+C R F NSQALGGHQNAHK+ERQ+ KRA
Subjt:  SSSILKLFGFPLVEHDD-------------NP-----PETPDGGDGGGIDT----NSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRA

Q9FG05 Zinc finger protein GIS25.0e-0839.77Show/hide
Query:  NPSSSILKLFGFPL-VEHDDNPPETPDGGDGGGIDTNSDD-DRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKR-------ALYFH
        +P    ++LFGF     H+++  E+ D  +        D+ +++F+C +C R F  SQALGGHQNAHKRERQ+ KR       A +FH
Subjt:  NPSSSILKLFGFPL-VEHDDNPPETPDGGDGGGIDTNSDD-DRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKR-------ALYFH

Arabidopsis top hitse value%identityAlignment
AT1G10480.1 zinc finger protein 51.6e-0943.59Show/hide
Query:  SNQNPSSSILKLFGFPLVEHDDNPPETPDGGDGGGIDTNS-DDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKR
        S+ + S   +KLFGF L+     P  T         +T S    ++  CQ+C + FANSQALGGHQNAHK+ER + KR
Subjt:  SNQNPSSSILKLFGFPLVEHDDNPPETPDGGDGGGIDTNS-DDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKR

AT1G67030.1 zinc finger protein 63.4e-1254.05Show/hide
Query:  SSILKLFGFPLVEHD--DNPPETPDGGDGGGIDTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRA
        +S LKLFG  L+E     N    P  G G G      + RK+ CQ+C R FANSQALGGHQNAHK+ERQ  KRA
Subjt:  SSILKLFGFPLVEHD--DNPPETPDGGDGGGIDTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRA

AT1G68360.1 C2H2 and C2HC zinc fingers superfamily protein1.4e-1042.11Show/hide
Query:  SSSILKLFGFPLVEHDD-------------NP-----PETPDGGDGGGIDT----NSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRA
        ++S LKLFGF +   +D             +P     P    G  GGG+ +        +RK+ CQ+C R F NSQALGGHQNAHK+ERQ+ KRA
Subjt:  SSSILKLFGFPLVEHDD-------------NP-----PETPDGGDGGGIDT----NSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRA

AT2G41940.1 zinc finger protein 86.1e-0963.41Show/hide
Query:  DTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKR
        D +++++R+F C +C R F  SQALGGHQNAHKRERQ AKR
Subjt:  DTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKR

AT5G06650.1 C2H2 and C2HC zinc fingers superfamily protein3.6e-0939.77Show/hide
Query:  NPSSSILKLFGFPL-VEHDDNPPETPDGGDGGGIDTNSDD-DRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKR-------ALYFH
        +P    ++LFGF     H+++  E+ D  +        D+ +++F+C +C R F  SQALGGHQNAHKRERQ+ KR       A +FH
Subjt:  NPSSSILKLFGFPL-VEHDDNPPETPDGGDGGGIDTNSDD-DRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKR-------ALYFH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCAATCAAAACCCCTCCTCTTCCATTCTGAAGCTTTTCGGCTTCCCATTGGTCGAACACGACGACAATCCGCCGGAGACACCCGACGGCGGAGACGGCGGCGGCAT
CGACACCAACTCCGACGACGACAGAAAGTTCCGCTGCCAATTCTGCCGCCGAGTTTTCGCCAACTCGCAAGCTCTCGGCGGCCACCAGAATGCCCACAAGAGAGAGCGCC
AGAGGGCCAAACGCGCCCTTTATTTCCACGCCGCCACACTCCGACCGCCGTCGCTTTACTCCAGCGTTTTCCCGGCCAACATTGGCGGTGGCCGTGCCGGTGGTGGTAGT
TCTAGAATTCTGCCTCGGAACGGTAACGGCTACTTTGTGGCGGCGGCGTGCGGCGGCGTATCGGCGGCATCGGGGCGGTGGATGTTTGGGAATTCGGGTGAAGGGAAAAT
GGAAAATTCAGGGTGTAAATTGGGAGGTGAAAAGGGATTATGTGTTGATCTTCATCTTAAACTTTCTCCATCTAATTCATCAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCAATCAAAACCCCTCCTCTTCCATTCTGAAGCTTTTCGGCTTCCCATTGGTCGAACACGACGACAATCCGCCGGAGACACCCGACGGCGGAGACGGCGGCGGCAT
CGACACCAACTCCGACGACGACAGAAAGTTCCGCTGCCAATTCTGCCGCCGAGTTTTCGCCAACTCGCAAGCTCTCGGCGGCCACCAGAATGCCCACAAGAGAGAGCGCC
AGAGGGCCAAACGCGCCCTTTATTTCCACGCCGCCACACTCCGACCGCCGTCGCTTTACTCCAGCGTTTTCCCGGCCAACATTGGCGGTGGCCGTGCCGGTGGTGGTAGT
TCTAGAATTCTGCCTCGGAACGGTAACGGCTACTTTGTGGCGGCGGCGTGCGGCGGCGTATCGGCGGCATCGGGGCGGTGGATGTTTGGGAATTCGGGTGAAGGGAAAAT
GGAAAATTCAGGGTGTAAATTGGGAGGTGAAAAGGGATTATGTGTTGATCTTCATCTTAAACTTTCTCCATCTAATTCATCAAATTAA
Protein sequenceShow/hide protein sequence
MSNQNPSSSILKLFGFPLVEHDDNPPETPDGGDGGGIDTNSDDDRKFRCQFCRRVFANSQALGGHQNAHKRERQRAKRALYFHAATLRPPSLYSSVFPANIGGGRAGGGS
SRILPRNGNGYFVAAACGGVSAASGRWMFGNSGEGKMENSGCKLGGEKGLCVDLHLKLSPSNSSN