; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G024610 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G024610
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontranscription initiation factor TFIID subunit 13
Genome locationchr02:31114047..31116436
RNA-Seq ExpressionLsi02G024610
SyntenyLsi02G024610
Gene Ontology termsGO:0006366 - transcription by RNA polymerase II (biological process)
GO:0006413 - translational initiation (biological process)
GO:0009793 - embryo development ending in seed dormancy (biological process)
GO:0009960 - endosperm development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003195 - Transcription initiation factor IID, subunit 13
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK18217.1 transcription initiation factor TFIID subunit 13 [Cucumis melo var. makuwa]2.6e-6093.71Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYI
        MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITEL    VYKAQEIGSKRGKLSVEDFLYLMRK    
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYI

Query:  DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
Subjt:  DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

XP_004136002.1 transcription initiation factor TFIID subunit 13 [Cucumis sativus]9.9e-6093.01Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYI
        MNN SAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITEL    VYKAQEIGSKRGKLSVEDFLYLMRK    
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYI

Query:  DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
Subjt:  DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

XP_008451497.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo]2.6e-6093.71Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYI
        MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITEL    VYKAQEIGSKRGKLSVEDFLYLMRK    
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYI

Query:  DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
Subjt:  DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

XP_022144527.1 transcription initiation factor TFIID subunit 13 [Momordica charantia]9.0e-6193.06Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYI
        MNNPSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITEL    VYKAQEIGSKRGKLSVEDFLYLMRK    
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYI

Query:  DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMDQ
        DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+DQ
Subjt:  DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMDQ

XP_038899215.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida]3.1e-6193.75Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYI
        MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITEL    VYKAQEIGSKRGKLSVEDFLYL+RK    
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYI

Query:  DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMDQ
        DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMDQ
Subjt:  DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMDQ

TrEMBL top hitse value%identityAlignment
A0A0A0KB69 Uncharacterized protein4.8e-6093.01Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYI
        MNN SAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITEL    VYKAQEIGSKRGKLSVEDFLYLMRK    
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYI

Query:  DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
Subjt:  DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

A0A1S3BRL0 transcription initiation factor TFIID subunit 131.3e-6093.71Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYI
        MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITEL    VYKAQEIGSKRGKLSVEDFLYLMRK    
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYI

Query:  DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
Subjt:  DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

A0A5A7TZC2 Transcription initiation factor TFIID subunit 131.3e-6093.71Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYI
        MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITEL    VYKAQEIGSKRGKLSVEDFLYLMRK    
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYI

Query:  DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
Subjt:  DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

A0A5D3D2Q2 Transcription initiation factor TFIID subunit 131.3e-6093.71Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYI
        MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITEL    VYKAQEIGSKRGKLSVEDFLYLMRK    
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYI

Query:  DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
        DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
Subjt:  DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

A0A6J1CTQ0 transcription initiation factor TFIID subunit 134.4e-6193.06Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYI
        MNNPSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITEL    VYKAQEIGSKRGKLSVEDFLYLMRK    
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYI

Query:  DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMDQ
        DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+DQ
Subjt:  DPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMDQ

SwissProt top hitse value%identityAlignment
P61216 Transcription initiation factor TFIID subunit 139.4e-2154.9Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYIDPRKLNRSTELLSMNEELKQARRA
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+     +KA  IG ++G++ VED ++L+RK    DPRK  R  +LL+MNEELK+AR+A
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYIDPRKLNRSTELLSMNEELKQARRA

Query:  FE
        F+
Subjt:  FE

Q148M7 Transcription initiation factor TFIID subunit 139.4e-2154.9Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYIDPRKLNRSTELLSMNEELKQARRA
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+     +KA  IG ++G++ VED ++L+RK    DPRK  R  +LL+MNEELK+AR+A
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYIDPRKLNRSTELLSMNEELKQARRA

Query:  FE
        F+
Subjt:  FE

Q15543 Transcription initiation factor TFIID subunit 139.4e-2154.9Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYIDPRKLNRSTELLSMNEELKQARRA
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+     +KA  IG ++G++ VED ++L+RK    DPRK  R  +LL+MNEELK+AR+A
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYIDPRKLNRSTELLSMNEELKQARRA

Query:  FE
        F+
Subjt:  FE

Q5R9W6 Transcription initiation factor TFIID subunit 139.4e-2154.9Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYIDPRKLNRSTELLSMNEELKQARRA
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+     +KA  IG ++G++ VED ++L+RK    DPRK  R  +LL+MNEELK+AR+A
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYIDPRKLNRSTELLSMNEELKQARRA

Query:  FE
        F+
Subjt:  FE

Q6NQH4 Transcription initiation factor TFIID subunit 132.2e-3361.19Show/hide
Query:  NNPSAGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVH
        N P+A +SS  ++   G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+EDIVVEY+T+L     +KAQEIGSKRG+L V+DFLYL+RK  
Subjt:  NNPSAGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVH

Query:  YIDPRKLNRSTELLSMNEELKQARRAFEIDEDKL
          D  KLNR  ELL+M EELKQAR+AF++DE +L
Subjt:  YIDPRKLNRSTELLSMNEELKQARRAFEIDEDKL

Arabidopsis top hitse value%identityAlignment
AT1G02680.1 TBP-associated factor 131.5e-3461.19Show/hide
Query:  NNPSAGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVH
        N P+A +SS  ++   G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+EDIVVEY+T+L     +KAQEIGSKRG+L V+DFLYL+RK  
Subjt:  NNPSAGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVH

Query:  YIDPRKLNRSTELLSMNEELKQARRAFEIDEDKL
          D  KLNR  ELL+M EELKQAR+AF++DE +L
Subjt:  YIDPRKLNRSTELLSMNEELKQARRAFEIDEDKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAATCCATCTGCTGGGTCGTCCTCAAAGCAAAGAACTGGATCATCCCAGCCCTCTGAAACCTCTTTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATTGCAGCA
CATGATGTATGGTTTTGGAGATGACCCCAATCCCCTTCCAGAGTCTGTAGCGCTTATGGAGGACATAGTTGTGGAGTACATAACTGAACTGGTAATAATTTCTGTGTATA
AAGCACAGGAGATTGGATCGAAGAGGGGAAAACTATCTGTGGAAGACTTTTTGTATTTAATGCGCAAGGTACATTACATAGATCCACGCAAACTGAACCGCTCTACCGAA
CTGTTGTCGATGAACGAAGAGCTGAAACAGGCTAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAGGAAGACAAGATGGATCAGTAA
mRNA sequenceShow/hide mRNA sequence
AGGAAATAAAAACAAACCGAACTCAACATACTTTCATCGTCCTTTCTTTCTAATCAGACCCCTTTGCGGAAGAACACTGTAAGCTCCGGCGAACCTCCTGCGGTGACTCC
GATTCTCCATCTCCGATTATTTTCGGCTTGATTATCGTGGGTAGATAGTGAAGATGAACAATCCATCTGCTGGGTCGTCCTCAAAGCAAAGAACTGGATCATCCCAGCCC
TCTGAAACCTCTTTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATTGCAGCACATGATGTATGGTTTTGGAGATGACCCCAATCCCCTTCCAGAGTCTGTAGCGCTTAT
GGAGGACATAGTTGTGGAGTACATAACTGAACTGGTAATAATTTCTGTGTATAAAGCACAGGAGATTGGATCGAAGAGGGGAAAACTATCTGTGGAAGACTTTTTGTATT
TAATGCGCAAGGTACATTACATAGATCCACGCAAACTGAACCGCTCTACCGAACTGTTGTCGATGAACGAAGAGCTGAAACAGGCTAGGAGAGCTTTTGAGATAGATGAA
GATAAGCTGAAAAAGGCTTTTGAAGAGGAAGACAAGATGGATCAGTAAATCATAGGAAGAAGATATTTTGGAGGTCATTTGTTGCTGCAGAAACAAAGTTCGTCTCATTA
TGGTTCCTTGTCATATTAAAAGTCAACCGACAGGTCTTTGAACTCTCTGTCTTTGTCAACCTTTTTCTGTAGCCCTAAGGCTCCATGGTAGACAGGGCAAAACAAAGCAA
TTAGCTTTAATTTGTTTTTTCTGCTTAATGGCAAACAATGTACATTAACCCCCTTCCTCCTAGCCCTGACCTACTTATAAAGGTAGGGGCTTCCTTACTGTACACACACA
CCCCTTTTGGAATTAATGAAATGAACACCTCTTTTAAA
Protein sequenceShow/hide protein sequence
MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVIISVYKAQEIGSKRGKLSVEDFLYLMRKVHYIDPRKLNRSTE
LLSMNEELKQARRAFEIDEDKLKKAFEEEDKMDQ