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Lsi02G024880 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G024880
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionpentatricopeptide repeat-containing protein At2g31400, chloroplastic-like
Genome locationchr02:31333913..31336230
RNA-Seq ExpressionLsi02G024880
SyntenyLsi02G024880
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
InterPro domainsIPR002625 - Smr domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008451469.1 PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Cucumis melo]1.1e-5396.4Show/hide
Query:  MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSENV
        MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRR IEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSE++
Subjt:  MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSENV

Query:  DLISKLQMISL
        DLISKLQ ISL
Subjt:  DLISKLQMISL

XP_022147988.1 pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Momordica charantia]4.8e-5496.4Show/hide
Query:  MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSENV
        MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLT MGAPFR+AKCNIGR+VSTGSVVAAWLKESGTLKLLVLHDDR HPDSENV
Subjt:  MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSENV

Query:  DLISKLQMISL
        DLISKLQMISL
Subjt:  DLISKLQMISL

XP_022953240.1 pentatricopeptide repeat-containing protein At2g31400, chloroplastic-like [Cucurbita moschata]3.7e-5496.4Show/hide
Query:  MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSENV
        MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRR I+ALL SMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSENV
Subjt:  MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSENV

Query:  DLISKLQMISL
        DLISKLQM+SL
Subjt:  DLISKLQMISL

XP_023547932.1 pentatricopeptide repeat-containing protein At2g31400, chloroplastic-like [Cucurbita pepo subsp. pepo]3.7e-5496.4Show/hide
Query:  MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSENV
        MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRR I+ALL SMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSENV
Subjt:  MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSENV

Query:  DLISKLQMISL
        DLISKLQM+SL
Subjt:  DLISKLQMISL

XP_038897325.1 pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Benincasa hispida]2.6e-5599.1Show/hide
Query:  MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSENV
        MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRR IEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSENV
Subjt:  MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSENV

Query:  DLISKLQMISL
        DLISKLQMISL
Subjt:  DLISKLQMISL

TrEMBL top hitse value%identityAlignment
A0A0A0KB90 Pentatricopeptide repeat-containing protein6.8e-5496.4Show/hide
Query:  MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSENV
        MVHAWLLGIHSVVF GHQLPKLLSILTGWGKHSKVVGDGALRR IEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSEN+
Subjt:  MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSENV

Query:  DLISKLQMISL
        DLISKLQ ISL
Subjt:  DLISKLQMISL

A0A1S3BSC2 pentatricopeptide repeat-containing protein At2g31400, chloroplastic5.2e-5496.4Show/hide
Query:  MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSENV
        MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRR IEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSE++
Subjt:  MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSENV

Query:  DLISKLQMISL
        DLISKLQ ISL
Subjt:  DLISKLQMISL

A0A6J1D2T9 pentatricopeptide repeat-containing protein At2g31400, chloroplastic2.3e-5496.4Show/hide
Query:  MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSENV
        MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLT MGAPFR+AKCNIGR+VSTGSVVAAWLKESGTLKLLVLHDDR HPDSENV
Subjt:  MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSENV

Query:  DLISKLQMISL
        DLISKLQMISL
Subjt:  DLISKLQMISL

A0A6J1GMF8 pentatricopeptide repeat-containing protein At2g31400, chloroplastic-like1.8e-5496.4Show/hide
Query:  MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSENV
        MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRR I+ALL SMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSENV
Subjt:  MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSENV

Query:  DLISKLQMISL
        DLISKLQM+SL
Subjt:  DLISKLQMISL

A0A6J1JLC8 pentatricopeptide repeat-containing protein At2g31400, chloroplastic-like4.4e-5394.59Show/hide
Query:  MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSENV
        MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRR I+ALL SMGAPF VAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSENV
Subjt:  MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSENV

Query:  DLISKLQMISL
        DLIS+LQM+SL
Subjt:  DLISKLQMISL

SwissProt top hitse value%identityAlignment
Q8GWA9 Pentatricopeptide repeat-containing protein At2g170331.9e-0528.81Show/hide
Query:  LPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWL
        +P  + +++G GKHS V G+  ++ +++ ++   G+P R+ + N+G +++ G  V  WL
Subjt:  LPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWL

Q8GYP6 Pentatricopeptide repeat-containing protein At1g189006.0e-0734.78Show/hide
Query:  PKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVL
        P  + I+TGWG+ S+V G   +R+ +E LL   G+PF     N G +V +G  +  WL +S   ++ +L
Subjt:  PKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVL

Q9SIC9 Pentatricopeptide repeat-containing protein At2g31400, chloroplastic2.3e-3572.04Show/hide
Query:  MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRT
        MVHAWLL I S+V+ GH+LPK+LSILTGWGKHSKVVGDGALRR +E LL  M APF ++KCN+GR+ S+GSVVA WL+ES TLKLL+LHD  T
Subjt:  MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRT

Q9SSF9 Pentatricopeptide repeat-containing protein At1g747503.9e-0637.7Show/hide
Query:  PKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKES
        P  + I+TGWG+ S+V G   +R+ +E LL     PF     N G +V +G  +  WL ES
Subjt:  PKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKES

Arabidopsis top hitse value%identityAlignment
AT1G18900.1 Pentatricopeptide repeat (PPR) superfamily protein4.3e-0834.78Show/hide
Query:  PKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVL
        P  + I+TGWG+ S+V G   +R+ +E LL   G+PF     N G +V +G  +  WL +S   ++ +L
Subjt:  PKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVL

AT1G18900.2 Pentatricopeptide repeat (PPR) superfamily protein4.3e-0834.78Show/hide
Query:  PKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVL
        P  + I+TGWG+ S+V G   +R+ +E LL   G+PF     N G +V +G  +  WL +S   ++ +L
Subjt:  PKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVL

AT1G18900.3 Pentatricopeptide repeat (PPR) superfamily protein5.6e-0837.7Show/hide
Query:  PKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKES
        P  + I+TGWG+ S+V G   +R+ +E LL   G+PF     N G +V +G  +  WL +S
Subjt:  PKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKES

AT1G74750.1 Pentatricopeptide repeat (PPR) superfamily protein2.8e-0737.7Show/hide
Query:  PKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKES
        P  + I+TGWG+ S+V G   +R+ +E LL     PF     N G +V +G  +  WL ES
Subjt:  PKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKES

AT2G31400.1 genomes uncoupled 11.7e-3672.04Show/hide
Query:  MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRT
        MVHAWLL I S+V+ GH+LPK+LSILTGWGKHSKVVGDGALRR +E LL  M APF ++KCN+GR+ S+GSVVA WL+ES TLKLL+LHD  T
Subjt:  MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCATGCTTGGTTGCTGGGTATCCATTCTGTTGTATTTAATGGCCATCAGTTGCCAAAGTTGTTAAGCATTCTGACAGGATGGGGAAAACACAGCAAAGTTGTCGG
TGACGGAGCTCTGAGACGGGTGATCGAGGCACTTTTAACTAGCATGGGGGCGCCATTTCGGGTTGCAAAATGTAATATAGGTAGGTATGTATCAACAGGCTCTGTGGTGG
CTGCCTGGTTGAAAGAGTCTGGTACCTTAAAATTGCTTGTTCTTCATGATGACAGAACTCATCCAGATAGTGAAAATGTGGATCTAATTTCCAAACTCCAAATGATTTCT
TTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTCATGCTTGGTTGCTGGGTATCCATTCTGTTGTATTTAATGGCCATCAGTTGCCAAAGTTGTTAAGCATTCTGACAGGATGGGGAAAACACAGCAAAGTTGTCGG
TGACGGAGCTCTGAGACGGGTGATCGAGGCACTTTTAACTAGCATGGGGGCGCCATTTCGGGTTGCAAAATGTAATATAGGTAGGTATGTATCAACAGGCTCTGTGGTGG
CTGCCTGGTTGAAAGAGTCTGGTACCTTAAAATTGCTTGTTCTTCATGATGACAGAACTCATCCAGATAGTGAAAATGTGGATCTAATTTCCAAACTCCAAATGATTTCT
TTGTAG
Protein sequenceShow/hide protein sequence
MVHAWLLGIHSVVFNGHQLPKLLSILTGWGKHSKVVGDGALRRVIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTLKLLVLHDDRTHPDSENVDLISKLQMIS
L