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Lsi02G025320 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G025320
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description60S ribosomal protein L44
Genome locationchr02:31818822..31820428
RNA-Seq ExpressionLsi02G025320
SyntenyLsi02G025320
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004497 - monooxygenase activity (molecular function)
GO:0005506 - iron ion binding (molecular function)
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (molecular function)
GO:0020037 - heme binding (molecular function)
InterPro domainsIPR000552 - Ribosomal protein L44e
IPR011332 - Zinc-binding ribosomal protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2091257.1 hypothetical protein ES319_A03G179400v1 [Gossypium barbadense]1.5e-3380Show/hide
Query:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR--------------DASILRLVETRRERE
        MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR               AS LRLVETRR +E
Subjt:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR--------------DASILRLVETRRERE

Query:  LLFFR
         L F+
Subjt:  LLFFR
KCW65059.1 hypothetical protein EUGRSUZ_G02575 [Eucalyptus grandis]3.7e-3280.2Show/hide
Query:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR----DASILRLVETRRERELLFFRCINIL
        MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR        +  VETR+ RE L  R +  L
Subjt:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR----DASILRLVETRRERELLFFRCINIL

Query:  S
        S
Subjt:  S
KCW65060.1 hypothetical protein EUGRSUZ_G02575 [Eucalyptus grandis]1.5e-3376.11Show/hide
Query:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR----------------DASILRLVETRRE
        MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR                 ASILR VETR+ 
Subjt:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR----------------DASILRLVETRRE

Query:  RELLFFRCINILS
        RE L  R +  LS
Subjt:  RELLFFRCINILS
KJB31844.1 hypothetical protein B456_005G210700 [Gossypium raimondii]2.5e-3378.5Show/hide
Query:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR----------------DASILRLVETRRE
        MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR                 AS LRLVETRR 
Subjt:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR----------------DASILRLVETRRE

Query:  RELLFFR
        +E L F+
Subjt:  RELLFFR
MBA0828907.1 hypothetical protein [Gossypium armourianum]1.1e-3170.94Show/hide
Query:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR--------------------------DAS
        +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR                           AS
Subjt:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR--------------------------DAS

Query:  ILRLVETRRERELLFFR
         LRLVETRR +E L F+
Subjt:  ILRLVETRRERELLFFR
TrEMBL top hitse value%identityAlignment
A0A059BGA6 Uncharacterized protein1.8e-3280.2Show/hide
Query:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR----DASILRLVETRRERELLFFRCINIL
        MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR        +  VETR+ RE L  R +  L
Subjt:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR----DASILRLVETRRERELLFFRCINIL

Query:  S
        S
Subjt:  S
A0A059BHB1 Uncharacterized protein7.2e-3476.11Show/hide
Query:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR----------------DASILRLVETRRE
        MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR                 ASILR VETR+ 
Subjt:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR----------------DASILRLVETRRE

Query:  RELLFFRCINILS
        RE L  R +  LS
Subjt:  RELLFFRCINILS
A0A0D2RJ15 Uncharacterized protein1.2e-3378.5Show/hide
Query:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR----------------DASILRLVETRRE
        MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR                 AS LRLVETRR 
Subjt:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR----------------DASILRLVETRRE

Query:  RELLFFR
        +E L F+
Subjt:  RELLFFR
A0A5J5WJ31 Uncharacterized protein7.2e-3480Show/hide
Query:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR--------------DASILRLVETRRERE
        MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR               AS LRLVETRR +E
Subjt:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR--------------DASILRLVETRRERE

Query:  LLFFR
         L F+
Subjt:  LLFFR
A0A7J9J3L6 Uncharacterized protein5.2e-3270.94Show/hide
Query:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR--------------------------DAS
        +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR                           AS
Subjt:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR--------------------------DAS

Query:  ILRLVETRRERELLFFR
         LRLVETRR +E L F+
Subjt:  ILRLVETRRERELLFFR
SwissProt top hitse value%identityAlignment
O23290 60S ribosomal protein L36a8.5e-3294.37Show/hide
Query:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR
        MVN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR
Subjt:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR
P0CQ50 60S ribosomal protein L447.9e-3072.83Show/hide
Query:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRDASILRLVETRRERELLFFRC
        MVN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLR    L     + + +L   RC
Subjt:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRDASILRLVETRRERELLFFRC
P0CQ51 60S ribosomal protein L447.9e-3072.83Show/hide
Query:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRDASILRLVETRRERELLFFRC
        MVN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLR    L     + + +L   RC
Subjt:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRDASILRLVETRRERELLFFRC
Q96499 60S ribosomal protein L443.4e-33100Show/hide
Query:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR
        MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR
Subjt:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR
Q9UVB8 60S ribosomal protein L442.3e-2975Show/hide
Query:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRDASILRLVETRRERELLFFRC
        MVNVPKT+KTYCK KECRKHT HKVTQYK GK SL AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLR    L  V  + + +L   RC
Subjt:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRDASILRLVETRRERELLFFRC
Arabidopsis top hitse value%identityAlignment
AT3G23390.1 Zinc-binding ribosomal protein family protein6.0e-3394.37Show/hide
Query:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR
        MVN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR
Subjt:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR
AT4G14320.1 Zinc-binding ribosomal protein family protein6.0e-3394.37Show/hide
Query:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR
        MVN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR
Subjt:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR
AT4G14320.2 Zinc-binding ribosomal protein family protein6.0e-3394.37Show/hide
Query:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR
        MVN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR
Subjt:  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAACGTTCCCAAGACAAAGAAGACTTACTGCAAGAGCAAGGAATGCAGAAAGCATACCTTGCACAAGGTTACCCAATACAAAAAGGGTAAGGACAGTCTTGCTGC
TCAAGGAAAGCGTCGTTATGATCGTAAACAATCAGGATATGGAGGACAAACCAAGCCCGTCTTTCATAAGAAGGCCAAAACCACAAAGAAGATTGTGCTAAGAGATGCAA
GCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAGATGCATTAACATATTGTCATTCACTATATATTGCTGTTTTAGGGAGTCAGAATTGTGG
GCTCTTTCTGCCCTTTGCTTTTTGTTTGGTGTTTCTGATATTTGGGAACATTTTTACCTGTTGAATTTTGTTTAA
mRNA sequenceShow/hide mRNA sequence
CGCCGATTAGGGTTTCTTCAGAGAGGTAGTAAGGACCAGAATCCATCATGGTGAACGTTCCCAAGACAAAGAAGACTTACTGCAAGAGCAAGGAATGCAGAAAGCATACC
TTGCACAAGGTTACCCAATACAAAAAGGGTAAGGACAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGATCGTAAACAATCAGGATATGGAGGACAAACCAAGCCCGTCTT
TCATAAGAAGGCCAAAACCACAAAGAAGATTGTGCTAAGAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAGATGCATTAACA
TATTGTCATTCACTATATATTGCTGTTTTAGGGAGTCAGAATTGTGGGCTCTTTCTGCCCTTTGCTTTTTGTTTGGTGTTTCTGATATTTGGGAACATTTTTACCTGTTG
AATTTTGTTTAATGTATCAACTAGCTTTATCCTCTACCAAATTTCTGGTTATCACTTGTTTGAAAATCCACTCTTCATTCGTCGCTGATATTATAGCGAATTGTTTTTTA
CTTGTTACCAGAAGCAGAAGGTAGAAGATATGCATTAGCATTTTGGTGGCAGTTTGCAGAGGCTGCTAGCCTGTGAAGTCTGCGTATAAACTTTCTACCGGCGTGTTATA
TT
Protein sequenceShow/hide protein sequence
MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRDASILRLVETRRERELLFFRCINILSFTIYCCFRESELW
ALSALCFLFGVSDIWEHFYLLNFV