CuGenDBv2

Gene ID	Lsi02G025420
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	F-box/WD-40 repeat-containing protein
Genome location	chr02:31902925..31907175
RNA-Seq Expression	Lsi02G025420
Synteny	Lsi02G025420
Gene Ontology terms	GO:0051568 - histone H3-K4 methylation (biological process) GO:0048188 - Set1C/COMPASS complex (cellular component) GO:0042393 - histone binding (molecular function)
InterPro domains	IPR001680 - WD40 repeat IPR001810 - F-box domain IPR015943 - WD40/YVTN repeat-like-containing domain superfamily IPR036047 - F-box-like domain superfamily IPR036322 - WD40-repeat-containing domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0058585.1 F-box/WD-40 repeat-containing protein [Cucumis melo var. makuwa]

4.7e-172

73.9

Show/hide

Query:  MTPPPADDRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAM
        MTPPP  DRSS RRRSD+DAKPVHSLSHDILCIIFSFLDLFDLVRCL VCKSWNYAIYKSEILR FCLRYQKQEMNSA+TS+VSFSLEKPLL+CLEEIAM
Subjt:  MTPPPADDRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAM

Query:  ERHKLALEEGRIRVSQWIGHS-------------------------------------------------------------------------------
        ERHKLALE+GRIRV QWIGHS                                                                               
Subjt:  ERHKLALEEGRIRVSQWIGHS-------------------------------------------------------------------------------

Query:  -------LSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTVGIRTLCYNDSSHLVF
               + YFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCV+DDQL+ GG+LLGNIGVSGLRSDQRV MLRSRNTVGIRTLC NDSS LVF
Subjt:  -------LSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTVGIRTLCYNDSSHLVF

Query:  AGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLTYQNGLGAVEERMGKRLSDETPIDAIN
        AGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGT RSCC+MDSRLL T+QNGLG VEER GKRLSDETPIDAI+
Subjt:  AGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLTYQNGLGAVEERMGKRLSDETPIDAIN

Query:  RRNRPSITSLAVGMNKIVTTHNDKFIRLWKFQS
        RRNRPSITSLAVGMNKIVTTHNDKFIRLWKFQS
Subjt:  RRNRPSITSLAVGMNKIVTTHNDKFIRLWKFQS

XP_004135950.1 F-box/WD-40 repeat-containing protein At3g52030 isoform X1 [Cucumis sativus]

4.0e-171

73.44

Show/hide

Query:  MTPPPADDRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAM
        MTPPP  DRSS RRRSD+DAKPVHSLSHDILCIIFSFLDLFDLVRCL VCKSWNYAIYKSEILR FCLRYQKQEMNSA+TSEVSFSLEKPLLECLEEIAM
Subjt:  MTPPPADDRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAM

Query:  ERHKLALEEGRIRVSQWIGHS-------------------------------------------------------------------------------
        ERHKLALE+GRIRVSQWIGHS                                                                               
Subjt:  ERHKLALEEGRIRVSQWIGHS-------------------------------------------------------------------------------

Query:  -------LSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTVGIRTLCYNDSSHLVF
               + YFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCV+DDQL+ GG+LLGNIGVSG+RSDQRV MLRSRNTVGIRTLCYN SS LVF
Subjt:  -------LSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTVGIRTLCYNDSSHLVF

Query:  AGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLTYQNGLGAVEERMGKRLSDETPIDAIN
        AGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGT +SCC+MDSRLL T+Q+GLG VEER GKRLSDETPID I+
Subjt:  AGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLTYQNGLGAVEERMGKRLSDETPIDAIN

Query:  RRNRPSITSLAVGMNKIVTTHNDKFIRLWKFQS
        RRNRPSITSLAVGMNKIVTTHNDKFI+LWKFQS
Subjt:  RRNRPSITSLAVGMNKIVTTHNDKFIRLWKFQS

XP_008461347.1 PREDICTED: F-box/WD-40 repeat-containing protein At3g52030 [Cucumis melo]

8.0e-172

73.67

Show/hide

Query:  MTPPPADDRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAM
        M PPP  DRSS RRRSD+DAKPVHSLSHDILCIIFSFLDLFDLVRCL VCKSWNYAIYKSEILR FCLRYQKQEMNSA+TS+VSFSLEKPLL+CLEEIAM
Subjt:  MTPPPADDRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAM

Query:  ERHKLALEEGRIRVSQWIGHS-------------------------------------------------------------------------------
        ERHKLALE+GRIRV QWIGHS                                                                               
Subjt:  ERHKLALEEGRIRVSQWIGHS-------------------------------------------------------------------------------

Query:  -------LSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTVGIRTLCYNDSSHLVF
               + Y DAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCV+DDQL+ GG+LLGNIGVSGLRSDQRV MLRSRNTVGIRTLCYNDSS LVF
Subjt:  -------LSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTVGIRTLCYNDSSHLVF

Query:  AGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLTYQNGLGAVEERMGKRLSDETPIDAIN
        AGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGT RSCC+MDSRLL T+QNGLG VEER GKRLSDETPIDAI+
Subjt:  AGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLTYQNGLGAVEERMGKRLSDETPIDAIN

Query:  RRNRPSITSLAVGMNKIVTTHNDKFIRLWKFQS
        RRNRPSITSLAVGMNKIVTTHNDKFIRLWKFQS
Subjt:  RRNRPSITSLAVGMNKIVTTHNDKFIRLWKFQS

XP_022149888.1 F-box/WD-40 repeat-containing protein At3g52030 isoform X1 [Momordica charantia]

5.4e-160

69.05

Show/hide

Query:  MTPPPADDRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAM
        M PPPA DRSSTR+RS ID+K V SLSHD+LCIIFSFLDLFDLVRC VVCKSWNYA++KSEIL+ FC R+QKQ+MNS ++SE+SFS EKPL  CLEEIAM
Subjt:  MTPPPADDRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAM

Query:  ERHKLALEEGRIRVSQWIGHS-------------------------------------------------------------------------------
        ERHKLA EE  I+VS W GHS                                                                               
Subjt:  ERHKLALEEGRIRVSQWIGHS-------------------------------------------------------------------------------

Query:  -------LSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTVGIRTLCYNDSSHLVF
               + YFD EAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGG++LGNIGVSGL SDQRVAMLRSRNTVGIRTLCYN SSHLVF
Subjt:  -------LSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTVGIRTLCYNDSSHLVF

Query:  AGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLTYQNGLGAVEERMGKRLSDETPIDAIN
        AGSTAGHVYCWDLRTMKSLWESRVSPN++YSL+HLQNDRSSLAVGGIDGILRIL+QNTGT RSCCIMDSRLL TYQNGLG VEER+GKR+S ETPIDAIN
Subjt:  AGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLTYQNGLGAVEERMGKRLSDETPIDAIN

Query:  RRNRPSITSLAVGMNKIVTTHNDKFIRLWKFQS
        RRNRP ITSLAVGMNKIVTTHNDKFIRLWKFQ+
Subjt:  RRNRPSITSLAVGMNKIVTTHNDKFIRLWKFQS

XP_038899781.1 F-box/WD-40 repeat-containing protein At3g52030 [Benincasa hispida]

1.0e-174

75.06

Show/hide

Query:  MTPPPADDRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAM
        MTPPPA +RSSTRRRSDIDAKPVHSLS+DILCIIFSFLDLFDLVRC VVCKSWNYAIYKSEILR FC RYQKQEMN+A+TSEVSFSLEKPLLECLEEIAM
Subjt:  MTPPPADDRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAM

Query:  ERHKLALEEGRIRVSQWIGHS-------------------------------------------------------------------------------
        ERHKLAL+EGRIRVSQWIGHS                                                                               
Subjt:  ERHKLALEEGRIRVSQWIGHS-------------------------------------------------------------------------------

Query:  -------LSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTVGIRTLCYNDSSHLVF
               + YFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGG+LLGNIGVSGLRSDQRVAMLRSRNTVGIR+LCYNDSSHLVF
Subjt:  -------LSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTVGIRTLCYNDSSHLVF

Query:  AGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLTYQNGLGAVEERMGKRLSDETPIDAIN
        AGSTAGHVYCWDLR MKSLWESRVSPNV+YSLQHLQNDRSSLAVGGIDGILRILDQNTGT RSCCIMDSRLL T+QN LG VEER+GKRLSDETPIDAIN
Subjt:  AGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLTYQNGLGAVEERMGKRLSDETPIDAIN

Query:  RRNRPSITSLAVGMNKIVTTHNDKFIRLWKFQS
        RRNRPSITSLAVGMNKI TTHNDKFIRLWKFQS
Subjt:  RRNRPSITSLAVGMNKIVTTHNDKFIRLWKFQS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KBD6 F-box domain-containing protein

1.9e-171

73.44

Show/hide

Query:  MTPPPADDRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAM
        MTPPP  DRSS RRRSD+DAKPVHSLSHDILCIIFSFLDLFDLVRCL VCKSWNYAIYKSEILR FCLRYQKQEMNSA+TSEVSFSLEKPLLECLEEIAM
Subjt:  MTPPPADDRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAM

Query:  ERHKLALEEGRIRVSQWIGHS-------------------------------------------------------------------------------
        ERHKLALE+GRIRVSQWIGHS                                                                               
Subjt:  ERHKLALEEGRIRVSQWIGHS-------------------------------------------------------------------------------

Query:  -------LSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTVGIRTLCYNDSSHLVF
               + YFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCV+DDQL+ GG+LLGNIGVSG+RSDQRV MLRSRNTVGIRTLCYN SS LVF
Subjt:  -------LSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTVGIRTLCYNDSSHLVF

Query:  AGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLTYQNGLGAVEERMGKRLSDETPIDAIN
        AGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGT +SCC+MDSRLL T+Q+GLG VEER GKRLSDETPID I+
Subjt:  AGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLTYQNGLGAVEERMGKRLSDETPIDAIN

Query:  RRNRPSITSLAVGMNKIVTTHNDKFIRLWKFQS
        RRNRPSITSLAVGMNKIVTTHNDKFI+LWKFQS
Subjt:  RRNRPSITSLAVGMNKIVTTHNDKFIRLWKFQS

A0A1S3CEH9 F-box/WD-40 repeat-containing protein At3g52030

3.9e-172

73.67

Show/hide

Query:  MTPPPADDRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAM
        M PPP  DRSS RRRSD+DAKPVHSLSHDILCIIFSFLDLFDLVRCL VCKSWNYAIYKSEILR FCLRYQKQEMNSA+TS+VSFSLEKPLL+CLEEIAM
Subjt:  MTPPPADDRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAM

Query:  ERHKLALEEGRIRVSQWIGHS-------------------------------------------------------------------------------
        ERHKLALE+GRIRV QWIGHS                                                                               
Subjt:  ERHKLALEEGRIRVSQWIGHS-------------------------------------------------------------------------------

Query:  -------LSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTVGIRTLCYNDSSHLVF
               + Y DAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCV+DDQL+ GG+LLGNIGVSGLRSDQRV MLRSRNTVGIRTLCYNDSS LVF
Subjt:  -------LSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTVGIRTLCYNDSSHLVF

Query:  AGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLTYQNGLGAVEERMGKRLSDETPIDAIN
        AGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGT RSCC+MDSRLL T+QNGLG VEER GKRLSDETPIDAI+
Subjt:  AGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLTYQNGLGAVEERMGKRLSDETPIDAIN

Query:  RRNRPSITSLAVGMNKIVTTHNDKFIRLWKFQS
        RRNRPSITSLAVGMNKIVTTHNDKFIRLWKFQS
Subjt:  RRNRPSITSLAVGMNKIVTTHNDKFIRLWKFQS

A0A5D3CFV2 F-box/WD-40 repeat-containing protein

2.3e-172

73.9

Show/hide

Query:  MTPPPADDRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAM
        MTPPP  DRSS RRRSD+DAKPVHSLSHDILCIIFSFLDLFDLVRCL VCKSWNYAIYKSEILR FCLRYQKQEMNSA+TS+VSFSLEKPLL+CLEEIAM
Subjt:  MTPPPADDRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAM

Query:  ERHKLALEEGRIRVSQWIGHS-------------------------------------------------------------------------------
        ERHKLALE+GRIRV QWIGHS                                                                               
Subjt:  ERHKLALEEGRIRVSQWIGHS-------------------------------------------------------------------------------

Query:  -------LSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTVGIRTLCYNDSSHLVF
               + YFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCV+DDQL+ GG+LLGNIGVSGLRSDQRV MLRSRNTVGIRTLC NDSS LVF
Subjt:  -------LSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTVGIRTLCYNDSSHLVF

Query:  AGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLTYQNGLGAVEERMGKRLSDETPIDAIN
        AGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGT RSCC+MDSRLL T+QNGLG VEER GKRLSDETPIDAI+
Subjt:  AGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLTYQNGLGAVEERMGKRLSDETPIDAIN

Query:  RRNRPSITSLAVGMNKIVTTHNDKFIRLWKFQS
        RRNRPSITSLAVGMNKIVTTHNDKFIRLWKFQS
Subjt:  RRNRPSITSLAVGMNKIVTTHNDKFIRLWKFQS

A0A6J1D7Z0 F-box/WD-40 repeat-containing protein At3g52030 isoform X1

2.6e-160

69.05

Show/hide

Query:  MTPPPADDRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAM
        M PPPA DRSSTR+RS ID+K V SLSHD+LCIIFSFLDLFDLVRC VVCKSWNYA++KSEIL+ FC R+QKQ+MNS ++SE+SFS EKPL  CLEEIAM
Subjt:  MTPPPADDRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAM

Query:  ERHKLALEEGRIRVSQWIGHS-------------------------------------------------------------------------------
        ERHKLA EE  I+VS W GHS                                                                               
Subjt:  ERHKLALEEGRIRVSQWIGHS-------------------------------------------------------------------------------

Query:  -------LSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTVGIRTLCYNDSSHLVF
               + YFD EAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGG++LGNIGVSGL SDQRVAMLRSRNTVGIRTLCYN SSHLVF
Subjt:  -------LSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTVGIRTLCYNDSSHLVF

Query:  AGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLTYQNGLGAVEERMGKRLSDETPIDAIN
        AGSTAGHVYCWDLRTMKSLWESRVSPN++YSL+HLQNDRSSLAVGGIDGILRIL+QNTGT RSCCIMDSRLL TYQNGLG VEER+GKR+S ETPIDAIN
Subjt:  AGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLTYQNGLGAVEERMGKRLSDETPIDAIN

Query:  RRNRPSITSLAVGMNKIVTTHNDKFIRLWKFQS
        RRNRP ITSLAVGMNKIVTTHNDKFIRLWKFQ+
Subjt:  RRNRPSITSLAVGMNKIVTTHNDKFIRLWKFQS

A0A6J1HB56 F-box/WD-40 repeat-containing protein At3g52030 isoform X1

3.2e-158

68.13

Show/hide

Query:  MTPPPADDRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAM
        M PP   DRSS RRRS+IDAKPV+SLSHDILCIIFSFLDLFDLVRC VVCKSWN AI+ SE+LR FC+++QKQEM S+++ EVS S EKPLLECLEEIAM
Subjt:  MTPPPADDRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAM

Query:  ERHKLALEEGRIRVSQWIGHS-------------------------------------------------------------------------------
        ERHKLALEEGRIRVSQW+GHS                                                                               
Subjt:  ERHKLALEEGRIRVSQWIGHS-------------------------------------------------------------------------------

Query:  -------LSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTVGIRTLCYNDSSHLVF
               + YFD EAVVGC DGTAHVFDMYSRRCSRI+RMLPGPVTCLCV DDQLILGG+L GNIGVSGLRSDQRVAMLRSRNT+GI+T+CYN SSHLVF
Subjt:  -------LSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTVGIRTLCYNDSSHLVF

Query:  AGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLTYQNGLGAVEERMGKRLSDETPIDAIN
        AGSTAGHVYCWDLRTMK LWESRVSPNV+YSL+HLQNDRSSLAVGGIDGILRILDQNTGT RS CIMDSRLL TYQ+G+G VEER+G RLSDETPIDAI+
Subjt:  AGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLTYQNGLGAVEERMGKRLSDETPIDAIN

Query:  RRNRPSITSLAVGMNKIVTTHNDKFIRLWKFQS
        RR+RP ITSLAVGMNKIVTTHNDKFIRLWKF++
Subjt:  RRNRPSITSLAVGMNKIVTTHNDKFIRLWKFQS

SwissProt top hits

e value

%identity

Alignment

Q9SV01 F-box/WD-40 repeat-containing protein At3g52030

3.8e-76

38.26

Show/hide

Query:  DRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAMERHKLAL
        D SS R+        + SL  DILCIIFSFLDLFDLV C VVC SWN  I + ++L+  C +      +S ++S    SL++P    +E+ AM+ HK+AL
Subjt:  DRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAMERHKLAL

Query:  EEGRIRVSQWIGHS--------------------------------------------------------------------------------------
          GRI + +W  HS                                                                                      
Subjt:  EEGRIRVSQWIGHS--------------------------------------------------------------------------------------

Query:  ---------------------LSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTV-
                             + Y D EAVVGCEDGTA VFDMYS+ CS+IIR   GP+TCL +SD+QL L G+ LG + VS    DQ VA L+S  T  
Subjt:  ---------------------LSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTV-

Query:  GIRTLCYNDSSHLVFAGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLT-YQNGLGAVEE
        GI+T+C+N  ++L F G+T G+V CWDLR M  LWE RVSPNV+YS+Q L+ND S +  GGIDG+LR++DQ +G   S  IMD +   T  +N    +E+
Subjt:  GIRTLCYNDSSHLVFAGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLT-YQNGLGAVEE

Query:  RMGKRLSDETPIDAINRRNRPSITSLAVGMNKIVTTHNDKFIRLWKF
        R GKR+S +  ID I R+ RP I+ +A+GM K+VT HN K I +WKF
Subjt:  RMGKRLSDETPIDAINRRNRPSITSLAVGMNKIVTTHNDKFIRLWKF

Arabidopsis top hits

e value

%identity

Alignment

AT3G52030.1 F-box family protein with WD40/YVTN repeat doamin

2.7e-77

38.26

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Query:  DRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAMERHKLAL
        D SS R+        + SL  DILCIIFSFLDLFDLV C VVC SWN  I + ++L+  C +      +S ++S    SL++P    +E+ AM+ HK+AL
Subjt:  DRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAMERHKLAL

Query:  EEGRIRVSQWIGHS--------------------------------------------------------------------------------------
          GRI + +W  HS                                                                                      
Subjt:  EEGRIRVSQWIGHS--------------------------------------------------------------------------------------

Query:  ---------------------LSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTV-
                             + Y D EAVVGCEDGTA VFDMYS+ CS+IIR   GP+TCL +SD+QL L G+ LG + VS    DQ VA L+S  T  
Subjt:  ---------------------LSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTV-

Query:  GIRTLCYNDSSHLVFAGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLT-YQNGLGAVEE
        GI+T+C+N  ++L F G+T G+V CWDLR M  LWE RVSPNV+YS+Q L+ND S +  GGIDG+LR++DQ +G   S  IMD +   T  +N    +E+
Subjt:  GIRTLCYNDSSHLVFAGSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLT-YQNGLGAVEE

Query:  RMGKRLSDETPIDAINRRNRPSITSLAVGMNKIVTTHNDKFIRLWKF
        R GKR+S +  ID I R+ RP I+ +A+GM K+VT HN K I +WKF
Subjt:  RMGKRLSDETPIDAINRRNRPSITSLAVGMNKIVTTHNDKFIRLWKF

AT3G52030.2 F-box family protein with WD40/YVTN repeat doamin

1.0e-79

40.14

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Query:  DRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAMERHKLAL
        D SS R+        + SL  DILCIIFSFLDLFDLV C VVC SWN  I + ++L+  C +      +S ++S    SL++P    +E+ AM+ HK+AL
Subjt:  DRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAMERHKLAL

Query:  EEGRIRVSQWIGHS--------------------------------------------------------------------------------------
          GRI + +W  HS                                                                                      
Subjt:  EEGRIRVSQWIGHS--------------------------------------------------------------------------------------

Query:  LSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTV-GIRTLCYNDSSHLVFAGSTAG
        + Y D EAVVGCEDGTA VFDMYS+ CS+IIR   GP+TCL +SD+QL L G+ LG + VS    DQ VA L+S  T  GI+T+C+N  ++L F G+T G
Subjt:  LSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTV-GIRTLCYNDSSHLVFAGSTAG

Query:  HVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLT-YQNGLGAVEERMGKRLSDETPIDAINRRNRP
        +V CWDLR M  LWE RVSPNV+YS+Q L+ND S +  GGIDG+LR++DQ +G   S  IMD +   T  +N    +E+R GKR+S +  ID I R+ RP
Subjt:  HVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLT-YQNGLGAVEERMGKRLSDETPIDAINRRNRP

Query:  SITSLAVGMNKIVTTHNDKFIRLWKF
         I+ +A+GM K+VT HN K I +WKF
Subjt:  SITSLAVGMNKIVTTHNDKFIRLWKF

Sequences

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CDS sequence

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ATGACTCCTCCACCGGCCGACGACAGGTCCTCGACGAGAAGACGGAGTGATATTGATGCAAAACCAGTTCACTCCCTAAGCCACGACATCTTGTGCATAATTTTCTCGTT
CCTTGACCTTTTCGATTTGGTTCGATGCTTAGTTGTTTGTAAATCCTGGAATTATGCTATTTATAAGTCCGAGATATTGCGAATGTTTTGCTTGAGGTATCAGAAGCAGG
AGATGAACTCCGCTACTACTTCCGAAGTTTCATTTTCTTTGGAGAAACCATTGCTGGAATGTTTAGAGGAAATAGCGATGGAACGACACAAGTTGGCCTTGGAGGAAGGT
CGTATTAGAGTTTCTCAATGGATTGGCCATTCACTGAGTTACTTTGATGCAGAGGCCGTTGTGGGTTGTGAAGATGGAACAGCTCATGTATTTGACATGTACAGTAGGAG
ATGCTCTAGAATTATCAGGATGCTTCCTGGGCCAGTGACATGCTTATGTGTGAGTGATGATCAGCTCATACTTGGTGGTACCCTACTTGGGAACATTGGAGTATCGGGTC
TTCGGTCTGATCAGCGGGTAGCAATGCTTAGATCAAGAAATACCGTAGGCATAAGAACTTTGTGTTACAACGATTCTTCACATTTAGTGTTCGCTGGATCAACTGCCGGC
CATGTCTATTGTTGGGACCTCAGGACTATGAAATCCTTATGGGAATCCCGAGTGAGCCCGAACGTCATATATTCTTTGCAACATCTCCAAAATGACAGGTCAAGTTTGGC
TGTTGGTGGAATAGATGGCATTCTACGTATTTTAGATCAGAATACAGGCACGACGCGGTCGTGTTGTATTATGGATAGTAGATTGCTATTGACATATCAGAACGGTCTCG
GAGCTGTTGAAGAAAGGATGGGAAAAAGACTGTCAGACGAGACTCCTATTGATGCCATAAACAGAAGGAATAGGCCTTCGATCACAAGCTTGGCTGTTGGAATGAATAAG
ATAGTCACAACGCACAATGATAAATTCATTAGATTGTGGAAGTTTCAAAGCTAA

mRNA sequence

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AGCAGGTCCAAAGCCCACACAGATCCTTCTCCTAGTAGCTGACCGGCCTTCTCCAGACGTCGGCTTTTTGCTTCAATCCTTCTCCGTCCGTAAAACCGCCGGCGATGACT
CCTCCACCGGCCGACGACAGGTCCTCGACGAGAAGACGGAGTGATATTGATGCAAAACCAGTTCACTCCCTAAGCCACGACATCTTGTGCATAATTTTCTCGTTCCTTGA
CCTTTTCGATTTGGTTCGATGCTTAGTTGTTTGTAAATCCTGGAATTATGCTATTTATAAGTCCGAGATATTGCGAATGTTTTGCTTGAGGTATCAGAAGCAGGAGATGA
ACTCCGCTACTACTTCCGAAGTTTCATTTTCTTTGGAGAAACCATTGCTGGAATGTTTAGAGGAAATAGCGATGGAACGACACAAGTTGGCCTTGGAGGAAGGTCGTATT
AGAGTTTCTCAATGGATTGGCCATTCACTGAGTTACTTTGATGCAGAGGCCGTTGTGGGTTGTGAAGATGGAACAGCTCATGTATTTGACATGTACAGTAGGAGATGCTC
TAGAATTATCAGGATGCTTCCTGGGCCAGTGACATGCTTATGTGTGAGTGATGATCAGCTCATACTTGGTGGTACCCTACTTGGGAACATTGGAGTATCGGGTCTTCGGT
CTGATCAGCGGGTAGCAATGCTTAGATCAAGAAATACCGTAGGCATAAGAACTTTGTGTTACAACGATTCTTCACATTTAGTGTTCGCTGGATCAACTGCCGGCCATGTC
TATTGTTGGGACCTCAGGACTATGAAATCCTTATGGGAATCCCGAGTGAGCCCGAACGTCATATATTCTTTGCAACATCTCCAAAATGACAGGTCAAGTTTGGCTGTTGG
TGGAATAGATGGCATTCTACGTATTTTAGATCAGAATACAGGCACGACGCGGTCGTGTTGTATTATGGATAGTAGATTGCTATTGACATATCAGAACGGTCTCGGAGCTG
TTGAAGAAAGGATGGGAAAAAGACTGTCAGACGAGACTCCTATTGATGCCATAAACAGAAGGAATAGGCCTTCGATCACAAGCTTGGCTGTTGGAATGAATAAGATAGTC
ACAACGCACAATGATAAATTCATTAGATTGTGGAAGTTTCAAAGCTAATTTGATTTCCTATGCTCTTTATTTAAACTGTACATATCAGCATATTGTTGTACGATGATTAA
TGATGAGTAATGTCAAATTGTGATCAGATAGAACTTTTGCTTTCAAGTAAAATTTATAGATTTCAACTCAATGGATGGG

Protein sequence

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MTPPPADDRSSTRRRSDIDAKPVHSLSHDILCIIFSFLDLFDLVRCLVVCKSWNYAIYKSEILRMFCLRYQKQEMNSATTSEVSFSLEKPLLECLEEIAMERHKLALEEG
RIRVSQWIGHSLSYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVSDDQLILGGTLLGNIGVSGLRSDQRVAMLRSRNTVGIRTLCYNDSSHLVFAGSTAG
HVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTTRSCCIMDSRLLLTYQNGLGAVEERMGKRLSDETPIDAINRRNRPSITSLAVGMNK
IVTTHNDKFIRLWKFQS

Lsi02G025420 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome