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Lsi02G025690 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G025690
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptioncarotenoid 9,10(9',10')-cleavage dioxygenase 1
Genome locationchr02:32158962..32159270
RNA-Seq ExpressionLsi02G025690
SyntenyLsi02G025690
Gene Ontology termsGO:0016121 - carotene catabolic process (biological process)
GO:0009570 - chloroplast stroma (cellular component)
GO:0010436 - carotenoid dioxygenase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR004294 - Carotenoid oxygenase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058625.1 carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Cucumis melo var. makuwa]1.9e-3389.02Show/hide
Query:  MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN
        MA+EKQKLNGG+ GRSLVEV+PKPSKGL SKATDLLEKLFVKLMYDSS+PQHYLSGNFAPVHDETPPITDLPVKGYLP   N
Subjt:  MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN

TYK10433.1 carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Cucumis melo var. makuwa]1.9e-3389.02Show/hide
Query:  MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN
        MA+EKQKLNGG+ GRSLVEV+PKPSKGL SKATDLLEKLFVKLMYDSS+PQHYLSGNFAPVHDETPPITDLPVKGYLP   N
Subjt:  MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN

XP_008461300.1 PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Cucumis melo]1.9e-3389.02Show/hide
Query:  MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN
        MA+EKQKLNGG+ GRSLVEV+PKPSKGL SKATDLLEKLFVKLMYDSS+PQHYLSGNFAPVHDETPPITDLPVKGYLP   N
Subjt:  MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN

XP_022148582.1 carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Momordica charantia]1.6e-3289.02Show/hide
Query:  MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN
        MAEEKQKLNGGV  RSLVEVNPKPSKGL SKATDLLEKLFVKLMYD+S PQHYLSGNFAPV DETPPITDLPVKGYLP   N
Subjt:  MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN

XP_038899772.1 carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Benincasa hispida]1.5e-3390.24Show/hide
Query:  MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN
        MAEEKQ L GGVAGRSLVEVNPKPSKGL SKATDLLE+LFVKLMYDSS+PQHYLSGNFAPVHDETPPITDLPVKGYLP   N
Subjt:  MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN

TrEMBL top hitse value%identityAlignment
A0A1S3CFM3 carotenoid 9,10(9',10')-cleavage dioxygenase 19.3e-3489.02Show/hide
Query:  MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN
        MA+EKQKLNGG+ GRSLVEV+PKPSKGL SKATDLLEKLFVKLMYDSS+PQHYLSGNFAPVHDETPPITDLPVKGYLP   N
Subjt:  MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN

A0A5A7UYJ0 Carotenoid 9,10(9',10')-cleavage dioxygenase 19.3e-3489.02Show/hide
Query:  MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN
        MA+EKQKLNGG+ GRSLVEV+PKPSKGL SKATDLLEKLFVKLMYDSS+PQHYLSGNFAPVHDETPPITDLPVKGYLP   N
Subjt:  MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN

A0A5D3CEY9 Carotenoid 9,10(9',10')-cleavage dioxygenase 19.3e-3489.02Show/hide
Query:  MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN
        MA+EKQKLNGG+ GRSLVEV+PKPSKGL SKATDLLEKLFVKLMYDSS+PQHYLSGNFAPVHDETPPITDLPVKGYLP   N
Subjt:  MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN

A0A6J1D5G1 carotenoid 9,10(9',10')-cleavage dioxygenase 17.9e-3389.02Show/hide
Query:  MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN
        MAEEKQKLNGGV  RSLVEVNPKPSKGL SKATDLLEKLFVKLMYD+S PQHYLSGNFAPV DETPPITDLPVKGYLP   N
Subjt:  MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN

K4K0F3 Carotenoid cleavage dioxygenase 17.9e-3389.02Show/hide
Query:  MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN
        MAEEKQKLNGGV  RSLVEVNPKPSKGL SKATDLLEKLFVKLMYD+S PQHYLSGNFAPV DETPPITDLPVKGYLP   N
Subjt:  MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN

SwissProt top hitse value%identityAlignment
C3VEQ4 Carotenoid 9,10(9',10')-cleavage dioxygenase 11.0e-1653.16Show/hide
Query:  EKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN
        E++  +G  + RS+V V PKP KG+ S   DL+EK+ V   +DSS+P HYL+GNFAPV DETPP   L V G LPV  N
Subjt:  EKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN

O65572 Carotenoid 9,10(9',10')-cleavage dioxygenase 12.5e-2063.77Show/hide
Query:  GRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN
        G S++ V+P+PSKG +SK  DLLE+L VKLM+D+S P HYLSGNFAP+ DETPP+ DLPV G+LP   N
Subjt:  GRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN

Q84KG5 Carotenoid 9,10(9',10')-cleavage dioxygenase2.8e-1966.18Show/hide
Query:  RSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN
        RS+V VNP+PSKGL S A DL+EK  V L +D S+P HYLSGNFAPV DETPP  DLPV+G+LP   N
Subjt:  RSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN

Q8LP17 Carotenoid 9,10(9',10')-cleavage dioxygenase 17.4e-2068.18Show/hide
Query:  LVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN
        ++EV PKPS G TSKA DLLEK+ VKL YDSS P H+LSGNFAPV DETPP+ DL V+G+LP   N
Subjt:  LVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN

Q94IR2 Carotenoid 9,10(9',10')-cleavage dioxygenase 16.9e-1861.84Show/hide
Query:  KLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN
        K NG   G  LV+V+PKP+ G +SK  DLLEKL VK +YDSS P HYL+GNF PV  ETPP  DLPVKG+LP   N
Subjt:  KLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN

Arabidopsis top hitse value%identityAlignment
AT3G63520.1 carotenoid cleavage dioxygenase 11.8e-2163.77Show/hide
Query:  GRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN
        G S++ V+P+PSKG +SK  DLLE+L VKLM+D+S P HYLSGNFAP+ DETPP+ DLPV G+LP   N
Subjt:  GRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAGGAGAAGCAGAAGCTCAACGGCGGAGTCGCCGGACGATCCTTGGTGGAGGTGAATCCGAAGCCGAGTAAAGGGCTCACATCGAAGGCCACCGATTTGTTGGA
GAAGCTGTTTGTCAAGCTTATGTATGATTCTTCAAGGCCTCAGCATTATCTTTCCGGTAATTTCGCTCCGGTTCACGATGAGACTCCTCCCATTACCGATCTTCCTGTTA
AAGGTTATCTTCCGGTGAGTTGTAATCTGCTTTCTGATCTGGTGTTTGTTTATTCAGAACTGTTGCTTAATGAATTCAACTGGGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAGGAGAAGCAGAAGCTCAACGGCGGAGTCGCCGGACGATCCTTGGTGGAGGTGAATCCGAAGCCGAGTAAAGGGCTCACATCGAAGGCCACCGATTTGTTGGA
GAAGCTGTTTGTCAAGCTTATGTATGATTCTTCAAGGCCTCAGCATTATCTTTCCGGTAATTTCGCTCCGGTTCACGATGAGACTCCTCCCATTACCGATCTTCCTGTTA
AAGGTTATCTTCCGGTGAGTTGTAATCTGCTTTCTGATCTGGTGTTTGTTTATTCAGAACTGTTGCTTAATGAATTCAACTGGGTTTAG
Protein sequenceShow/hide protein sequence
MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCNLLSDLVFVYSELLLNEFNWV