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Lsi02G025850 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G025850
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionarabinogalactan peptide 23-like
Genome locationchr02:32308331..32308522
RNA-Seq ExpressionLsi02G025850
SyntenyLsi02G025850
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0031225 - anchored component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025661.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]5.9e-1792.06Show/hide
Query:  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
        MEMKKIACAALFAAATV+AVVA+DESLSPAAAPGPSSAASAALPALGSLVGASLVSFVA++ N
Subjt:  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
XP_022933008.1 arabinogalactan peptide 23-like [Cucurbita moschata]3.0e-1690.48Show/hide
Query:  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
        MEMKKIACAALFAAATV+AVVA+DESLSPAAAPGPSSAASA LPALGSLVGASLVS VAY+ N
Subjt:  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
XP_022960230.1 arabinogalactan peptide 23-like [Cucurbita moschata]1.3e-1690.48Show/hide
Query:  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
        MEMKKIACAALFAAAT++AVVA+DESLSPAAAPGPSSAASAALPALGSLVGASLVSFVA++ N
Subjt:  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
XP_023004714.1 arabinogalactan peptide 23-like [Cucurbita maxima]2.0e-1793.65Show/hide
Query:  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
        MEMKKIACAALFAAATV+AVVA+DESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY+ N
Subjt:  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
XP_038899473.1 arabinogalactan protein 23-like [Benincasa hispida]3.5e-1793.65Show/hide
Query:  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
        MEMKKIACAALFAAA VS+ VAADESLSPAAAPGPSSAASAALPALGSLVGASLV+FVAYFLN
Subjt:  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
TrEMBL top hitse value%identityAlignment
A0A1S3CDX5 arabinogalactan peptide 23-like4.8e-1284.38Show/hide
Query:  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFV-AYFLN
        MEMKKIACAALFAAA VSA VAADES+SPAAAPGPSSAASAALP L    GAS+VSFV AYFLN
Subjt:  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFV-AYFLN
A0A6J1F3F5 arabinogalactan peptide 23-like1.4e-1690.48Show/hide
Query:  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
        MEMKKIACAALFAAATV+AVVA+DESLSPAAAPGPSSAASA LPALGSLVGASLVS VAY+ N
Subjt:  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
A0A6J1H8I1 arabinogalactan peptide 23-like6.4e-1790.48Show/hide
Query:  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
        MEMKKIACAALFAAAT++AVVA+DESLSPAAAPGPSSAASAALPALGSLVGASLVSFVA++ N
Subjt:  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
A0A6J1IYE9 arabinogalactan peptide 23-like1.0e-1485.71Show/hide
Query:  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
        MEMK IAC ALF AA V+AVVA+DES SPAAAPGPSSAASAALPALGSL+GASLVSFVAY LN
Subjt:  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
A0A6J1KX42 arabinogalactan peptide 23-like9.9e-1893.65Show/hide
Query:  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
        MEMKKIACAALFAAATV+AVVA+DESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY+ N
Subjt:  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 236.0e-1271.43Show/hide
Query:  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
        MEMKKIAC  LFAAA+++AV+AA+E  +P  APGP+SAASAALPALGSLVGASLVS  +Y+L+
Subjt:  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)5.7e-1065.62Show/hide
Query:  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGP-SSAASAALPALGSLVGASLVSFVAYFLN
        MEMKKIAC  +FAAA+++AV+AA+     A APGP +S AS A+PALGSLVGASLVS  AY+LN
Subjt:  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGP-SSAASAALPALGSLVGASLVSFVAYFLN
AT3G57690.1 arabinogalactan protein 234.3e-1371.43Show/hide
Query:  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN
        MEMKKIAC  LFAAA+++AV+AA+E  +P  APGP+SAASAALPALGSLVGASLVS  +Y+L+
Subjt:  MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGAAGAAGATCGCTTGCGCCGCCCTCTTCGCCGCCGCCACCGTCAGTGCCGTCGTGGCTGCCGATGAGTCTCTCTCTCCCGCCGCTGCACCGGGGCCGAGCAG
CGCCGCCTCCGCCGCTCTCCCCGCCCTCGGATCCCTCGTCGGTGCCTCACTTGTTTCCTTCGTCGCCTACTTCTTGAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGAAGAAGATCGCTTGCGCCGCCCTCTTCGCCGCCGCCACCGTCAGTGCCGTCGTGGCTGCCGATGAGTCTCTCTCTCCCGCCGCTGCACCGGGGCCGAGCAG
CGCCGCCTCCGCCGCTCTCCCCGCCCTCGGATCCCTCGTCGGTGCCTCACTTGTTTCCTTCGTCGCCTACTTCTTGAACTGA
Protein sequenceShow/hide protein sequence
MEMKKIACAALFAAATVSAVVAADESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN