; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G026210 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G026210
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCCR4-NOT transcription complex subunit like
Genome locationchr02:32642510..32646381
RNA-Seq ExpressionLsi02G026210
SyntenyLsi02G026210
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575660.1 hypothetical protein SDJN03_26299, partial [Cucurbita argyrosperma subsp. sororia]1.2e-2160.68Show/hide
Query:  PPEFDSQSRSSLLHRRHSISLEHLSISFFQGIHFDSCA-ENGIWRYRNSRGLELRQRSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVF
        P   +  SR SL+H         +  S   GI + S A     +RYRN++GLELRQRSFSITASNSSD NSIKEENGSSKA+SDA+GPPFLTILAGIFVF
Subjt:  PPEFDSQSRSSLLHRRHSISLEHLSISFFQGIHFDSCA-ENGIWRYRNSRGLELRQRSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVF

Query:  SLVLWIFSSAIASVIAV
        SL+LW+ SSA  S+I +
Subjt:  SLVLWIFSSAIASVIAV

XP_022953425.1 uncharacterized protein LOC111455984 [Cucurbita moschata]1.4e-2261.54Show/hide
Query:  PPEFDSQSRSSLLHRRHSISLEHLSISFFQGIHFDSCA-ENGIWRYRNSRGLELRQRSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVF
        P   +  SR SL+H         +  S   GI + S A     +RYRN++GLELRQRSFSITASNSSDGNSIKEENGSSKA+SDA+GPPFLTILAGIFVF
Subjt:  PPEFDSQSRSSLLHRRHSISLEHLSISFFQGIHFDSCA-ENGIWRYRNSRGLELRQRSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVF

Query:  SLVLWIFSSAIASVIAV
        SL+LW+ SSA  S+I +
Subjt:  SLVLWIFSSAIASVIAV

XP_022991945.1 uncharacterized protein LOC111488436 [Cucurbita maxima]9.9e-2158.97Show/hide
Query:  PPEFDSQSRSSLLHRRHSISLEHLSISFFQGIHFDSCA-ENGIWRYRNSRGLELRQRSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVF
        P   +  SR SL+H         +  S   GI + S A     +RYRN++GLEL  RSFSITASNSSDGNSI+EENGSSKA+SDA+GPPFLTILAGIFVF
Subjt:  PPEFDSQSRSSLLHRRHSISLEHLSISFFQGIHFDSCA-ENGIWRYRNSRGLELRQRSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVF

Query:  SLVLWIFSSAIASVIAV
        SL+LW+ SSA  S+I +
Subjt:  SLVLWIFSSAIASVIAV

XP_023547947.1 uncharacterized protein LOC111806743 [Cucurbita pepo subsp. pepo]3.8e-2058.97Show/hide
Query:  PPEFDSQSRSSLLHRRHSISLEHLSISFFQGIHFDSCA-ENGIWRYRNSRGLELRQRSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVF
        P   +  SR SL+H         +  S   GI + S A     + YRN++GLELRQRSFSITASNSSD NSIKEENGSSKA+ DA+GPPFLTILAGIFVF
Subjt:  PPEFDSQSRSSLLHRRHSISLEHLSISFFQGIHFDSCA-ENGIWRYRNSRGLELRQRSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVF

Query:  SLVLWIFSSAIASVIAV
        SL+LW+ SSA  S+I +
Subjt:  SLVLWIFSSAIASVIAV

XP_038899532.1 uncharacterized protein LOC120086813 isoform X1 [Benincasa hispida]9.6e-2466.36Show/hide
Query:  SRSSLLHRRHSISLEHLSISFFQGIHFDSCAEN-GIWRYRNSRGLELRQRSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVFSLVLWIF
        SR SL+HR           S    I F S A     +RYRN+RGLELRQRSFSITASNSSDGNSIKEENGSSKA++DA+GPPFLTILAGIFVFSLVLWIF
Subjt:  SRSSLLHRRHSISLEHLSISFFQGIHFDSCAEN-GIWRYRNSRGLELRQRSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVFSLVLWIF

Query:  SSAIASVIAV
        SS + S +++
Subjt:  SSAIASVIAV

TrEMBL top hitse value%identityAlignment
A0A6J1CV15 uncharacterized protein LOC1110150324.6e-1668.92Show/hide
Query:  WRYRNSRGLELRQRSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVFSLVLWIFSSAIASVIAV
        +R+R+++GLEL QRSFSITASNSSDGNSIKEE     AT DA+GPPFLTILAG FVFSL++W+ SSA  S+I +
Subjt:  WRYRNSRGLELRQRSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVFSLVLWIFSSAIASVIAV

A0A6J1GPL5 uncharacterized protein LOC1114559846.7e-2361.54Show/hide
Query:  PPEFDSQSRSSLLHRRHSISLEHLSISFFQGIHFDSCA-ENGIWRYRNSRGLELRQRSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVF
        P   +  SR SL+H         +  S   GI + S A     +RYRN++GLELRQRSFSITASNSSDGNSIKEENGSSKA+SDA+GPPFLTILAGIFVF
Subjt:  PPEFDSQSRSSLLHRRHSISLEHLSISFFQGIHFDSCA-ENGIWRYRNSRGLELRQRSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVF

Query:  SLVLWIFSSAIASVIAV
        SL+LW+ SSA  S+I +
Subjt:  SLVLWIFSSAIASVIAV

A0A6J1H506 uncharacterized protein LOC1114606325.3e-2054.17Show/hide
Query:  SSLLHRRHSISLEHLS-ISFFQGIHFDSCAENGI----WRYRNSRGLELRQRSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVFSLVLW
        S L+   H  SL+H + +    G+ F     NG     +RY+N++GL+LRQRSFSITASNSSDGNS KE+N  SK T DA+GPPFLTILAG FVFSLVLW
Subjt:  SSLLHRRHSISLEHLS-ISFFQGIHFDSCAENGI----WRYRNSRGLELRQRSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVFSLVLW

Query:  IFSSAIASVIAVKFRRSSAE
        I SS++ ++IA+  +  S +
Subjt:  IFSSAIASVIAVKFRRSSAE

A0A6J1JUC2 uncharacterized protein LOC1114884364.8e-2158.97Show/hide
Query:  PPEFDSQSRSSLLHRRHSISLEHLSISFFQGIHFDSCA-ENGIWRYRNSRGLELRQRSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVF
        P   +  SR SL+H         +  S   GI + S A     +RYRN++GLEL  RSFSITASNSSDGNSI+EENGSSKA+SDA+GPPFLTILAGIFVF
Subjt:  PPEFDSQSRSSLLHRRHSISLEHLSISFFQGIHFDSCA-ENGIWRYRNSRGLELRQRSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVF

Query:  SLVLWIFSSAIASVIAV
        SL+LW+ SSA  S+I +
Subjt:  SLVLWIFSSAIASVIAV

A0A6J1KVQ7 uncharacterized protein LOC1114980253.1e-2058.04Show/hide
Query:  SSLLHRRHSISLEHLS-ISFFQGIHFDSCAENGI----WRYRNSRGLELRQRSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVFSLVLW
        S L+   H  SL+H + +    G+ F     NG     +RY+N++GL+LRQRSFSITASNSSDGNS KEEN  SK T DA+GPPFLTILAG FVFSLVLW
Subjt:  SSLLHRRHSISLEHLS-ISFFQGIHFDSCAENGI----WRYRNSRGLELRQRSFSITASNSSDGNSIKEENGSSKATSDAEGPPFLTILAGIFVFSLVLW

Query:  IFSSAIASVIAV
        I SS++ ++IA+
Subjt:  IFSSAIASVIAV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTATGTTCCAAAGTCTTTGTAATACGACTTACTCACTGAAGCTGAAGAATGGCTTCCATCTTCGCTGCGCCGCCGTCTCAACTGAATCTCACATCCCGCCCGAGTT
TGATTCCCAGAGCCGTTCTTCCCTCCTCCATCGCCGGCATTCAATTTCACTCGAACACCTCTCCATTTCCTTCTTTCAGGGAATCCACTTTGATTCTTGTGCTGAAAATG
GAATTTGGAGGTATAGGAACAGCAGAGGATTGGAATTAAGGCAAAGATCCTTTTCTATAACAGCCTCAAATTCCTCAGATGGGAATTCCATCAAGGAGGAAAATGGTTCG
AGTAAAGCAACAAGTGATGCCGAAGGTCCTCCATTTCTTACCATTTTGGCTGGAATTTTTGTCTTTTCCCTTGTACTCTGGATATTCAGTTCTGCTATCGCGTCAGTTAT
AGCTGTAAAATTTCGCCGTTCATCAGCCGAAGCAGTTATCACTGGCATCCAAATATCAGCAGTATCACTCAACAGAGACTGCACCTGTGGATCTGCAGCCATTGCTGAAG
AAATCATTTCATCCACATTATCTAGTTTTTCAGATAGCTTATCCAACTCCTTGGCAATTTCCAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTATGTTCCAAAGTCTTTGTAATACGACTTACTCACTGAAGCTGAAGAATGGCTTCCATCTTCGCTGCGCCGCCGTCTCAACTGAATCTCACATCCCGCCCGAGTT
TGATTCCCAGAGCCGTTCTTCCCTCCTCCATCGCCGGCATTCAATTTCACTCGAACACCTCTCCATTTCCTTCTTTCAGGGAATCCACTTTGATTCTTGTGCTGAAAATG
GAATTTGGAGGTATAGGAACAGCAGAGGATTGGAATTAAGGCAAAGATCCTTTTCTATAACAGCCTCAAATTCCTCAGATGGGAATTCCATCAAGGAGGAAAATGGTTCG
AGTAAAGCAACAAGTGATGCCGAAGGTCCTCCATTTCTTACCATTTTGGCTGGAATTTTTGTCTTTTCCCTTGTACTCTGGATATTCAGTTCTGCTATCGCGTCAGTTAT
AGCTGTAAAATTTCGCCGTTCATCAGCCGAAGCAGTTATCACTGGCATCCAAATATCAGCAGTATCACTCAACAGAGACTGCACCTGTGGATCTGCAGCCATTGCTGAAG
AAATCATTTCATCCACATTATCTAGTTTTTCAGATAGCTTATCCAACTCCTTGGCAATTTCCAGCTGA
Protein sequenceShow/hide protein sequence
MGMFQSLCNTTYSLKLKNGFHLRCAAVSTESHIPPEFDSQSRSSLLHRRHSISLEHLSISFFQGIHFDSCAENGIWRYRNSRGLELRQRSFSITASNSSDGNSIKEENGS
SKATSDAEGPPFLTILAGIFVFSLVLWIFSSAIASVIAVKFRRSSAEAVITGIQISAVSLNRDCTCGSAAIAEEIISSTLSSFSDSLSNSLAISS