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Lsi02G026240 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G026240
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationchr02:32666431..32666682
RNA-Seq ExpressionLsi02G026240
SyntenyLsi02G026240
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575656.1 hypothetical protein SDJN03_26295, partial [Cucurbita argyrosperma subsp. sororia]1.4e-1874.07Show/hide
Query:  GMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPSLSRGECEMTFDEDSS
        GM  TAAVF+LVQILVYLILSKSS VFSKN  RSLSFRQVRSL+IRRI+ ALSDFPS   G+  P  SRGEC   FDE SS
Subjt:  GMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPSLSRGECEMTFDEDSS

XP_022147203.1 uncharacterized protein LOC111016209 [Momordica charantia]2.1e-1465.91Show/hide
Query:  GMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPSLSR-------GECEMTFDEDSS
        G+ ATAAVF LVQILVYLILSKSS VFSKN  RSLSFR VRSLSIRRI+ ALSD PS  GGE SP           GEC   F + SS
Subjt:  GMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPSLSR-------GECEMTFDEDSS

XP_022954080.1 uncharacterized protein LOC111456452 [Cucurbita moschata]2.9e-1976.54Show/hide
Query:  GMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPSLSRGECEMTFDEDSS
        GM  TAAVF+LVQILVYLILSKSS VFSKN  RSLSFRQVRSLSIRRI+ ALSDFPS TG    P  SRGEC   FDE SS
Subjt:  GMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPSLSRGECEMTFDEDSS

XP_022991948.1 uncharacterized protein LOC111488440 [Cucurbita maxima]1.9e-1575.34Show/hide
Query:  GMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPSLSRGECE
        GM  TAAVF+LVQILVYLILSKSS VFSKN  RSLSFRQVRSLSIRRI+ ALSDFPS  G    P  SRG  E
Subjt:  GMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPSLSRGECE

XP_023548863.1 uncharacterized protein LOC111807384 [Cucurbita pepo subsp. pepo]6.4e-1975.31Show/hide
Query:  GMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPSLSRGECEMTFDEDSS
        GM  TAAVF+LVQILVYLILSKSS VFSKN  RSLSFRQVRSL+IRRI+ ALSDFPS TG    P  SRGEC   FDE SS
Subjt:  GMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPSLSRGECEMTFDEDSS

TrEMBL top hitse value%identityAlignment
A0A660KP35 Uncharacterized protein5.9e-1061.76Show/hide
Query:  MQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPSLSR
        M    A+F+LVQ+LVYLILS SS +FSKNA RSLSFR  RS+SI R++  LSD P+  GGE SP+ SR
Subjt:  MQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPSLSR

A0A6J0PQA3 uncharacterized protein LOC1095065092.2e-0967.74Show/hide
Query:  AVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPSLS
        A+F+LVQ LVYLILSKSS +FS    RSLSFR VRS+SIRR++ ALSD P   GGE SPS S
Subjt:  AVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPSLS

A0A6J1D0M4 uncharacterized protein LOC1110162091.0e-1465.91Show/hide
Query:  GMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPSLSR-------GECEMTFDEDSS
        G+ ATAAVF LVQILVYLILSKSS VFSKN  RSLSFR VRSLSIRRI+ ALSD PS  GGE SP           GEC   F + SS
Subjt:  GMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPSLSR-------GECEMTFDEDSS

A0A6J1GRF7 uncharacterized protein LOC1114564521.4e-1976.54Show/hide
Query:  GMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPSLSRGECEMTFDEDSS
        GM  TAAVF+LVQILVYLILSKSS VFSKN  RSLSFRQVRSLSIRRI+ ALSDFPS TG    P  SRGEC   FDE SS
Subjt:  GMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPSLSRGECEMTFDEDSS

A0A6J1JXQ0 uncharacterized protein LOC1114884409.3e-1675.34Show/hide
Query:  GMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPSLSRGECE
        GM  TAAVF+LVQILVYLILSKSS VFSKN  RSLSFRQVRSLSIRRI+ ALSDFPS  G    P  SRG  E
Subjt:  GMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPSLSRGECE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G05575.1 unknown protein2.0e-1057.35Show/hide
Query:  GMQATAAVFILVQILVYLILSKSSQVF--SKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPS
        GM    ++F L+Q LVYLILSKSS VF  SK   R+ SFR  RS+SIRRI+  L D P+  GGE SPS
Subjt:  GMQATAAVFILVQILVYLILSKSSQVF--SKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPS

AT2G31945.1 unknown protein1.9e-0851.9Show/hide
Query:  MQATAAVFILVQILVYLILSKSSQVF--SKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPSLSRGECEMTFDE
        M    A+F LVQ LVYLIL KSS+VF  S +  R+ SFR +RS+SIRRI+ AL D P+  G + SPS S G    + DE
Subjt:  MQATAAVFILVQILVYLILSKSSQVF--SKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPSLSRGECEMTFDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAGGAATGCAAGCGACTGCTGCCGTGTTTATCCTCGTGCAGATTCTAGTTTATCTAATCCTCTCTAAATCTTCTCAAGTCTTCTCTAAGAATGCGAACAGGTCTCT
CAGTTTTCGACAGGTCCGATCTCTGAGTATTCGTCGGATTATTGAAGCTCTCTCTGACTTTCCCTCTAGCACCGGTGGCGAGGCGTCTCCTTCTCTAAGTCGTGGAGAAT
GTGAAATGACATTCGATGAAGACAGTTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTAGGAATGCAAGCGACTGCTGCCGTGTTTATCCTCGTGCAGATTCTAGTTTATCTAATCCTCTCTAAATCTTCTCAAGTCTTCTCTAAGAATGCGAACAGGTCTCT
CAGTTTTCGACAGGTCCGATCTCTGAGTATTCGTCGGATTATTGAAGCTCTCTCTGACTTTCCCTCTAGCACCGGTGGCGAGGCGTCTCCTTCTCTAAGTCGTGGAGAAT
GTGAAATGACATTCGATGAAGACAGTTCTTGA
Protein sequenceShow/hide protein sequence
MLGMQATAAVFILVQILVYLILSKSSQVFSKNANRSLSFRQVRSLSIRRIIEALSDFPSSTGGEASPSLSRGECEMTFDEDSS