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Lsi02G026310 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G026310
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein UPSTREAM OF FLC isoform X1
Genome locationchr02:32718646..32718897
RNA-Seq ExpressionLsi02G026310
SyntenyLsi02G026310
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR010369 - Protein SOSEKI


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004136105.3 uncharacterized protein LOC101207468 isoform X1 [Cucumis sativus]1.5e-1569.33Show/hide
Query:  MKLRKRALMEANK----GGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM
        MKLRKRALMEAN     GGE+RKVHIIYFLSRMGHVEQPHLIRVHHLA    GG  GVYLR         +KRW+
Subjt:  MKLRKRALMEANK----GGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM
XP_008461226.1 PREDICTED: protein UPSTREAM OF FLC isoform X1 [Cucumis melo]1.7e-1671.62Show/hide
Query:  MKLRKRALMEA---NKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM
        MKLRKRALMEA   N+GGE+RKVHIIYFLSRMGHVEQPHLIRVHHLAGA     GGVYLR         +KRW+
Subjt:  MKLRKRALMEA---NKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM
XP_008461227.1 PREDICTED: uncharacterized protein LOC103499876 isoform X2 [Cucumis melo]1.7e-1671.62Show/hide
Query:  MKLRKRALMEA---NKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM
        MKLRKRALMEA   N+GGE+RKVHIIYFLSRMGHVEQPHLIRVHHLAGA     GGVYLR         +KRW+
Subjt:  MKLRKRALMEA---NKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM
XP_022144952.1 protein UPSTREAM OF FLC isoform X1 [Momordica charantia]1.5e-1262.16Show/hide
Query:  MKLRKRA--LMEA-NKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM
        M+L+KR+  LMEA NKGGE+R+VHI+YFLSRMGHVEQPHLIRVHHLA A      GV+LR         +KRW+
Subjt:  MKLRKRA--LMEA-NKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM
XP_038899908.1 LOW QUALITY PROTEIN: uncharacterized protein LOC120087098 [Benincasa hispida]8.4e-1976.06Show/hide
Query:  MKLRKRALMEANKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM
        MKLRKRALMEANKGGE+RKVHIIYFLSRMGHVEQPHLIRVHHL     GGGGGVYLR         +KRW+
Subjt:  MKLRKRALMEANKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM
TrEMBL top hitse value%identityAlignment
A0A1S3CE79 protein UPSTREAM OF FLC isoform X18.4e-1771.62Show/hide
Query:  MKLRKRALMEA---NKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM
        MKLRKRALMEA   N+GGE+RKVHIIYFLSRMGHVEQPHLIRVHHLAGA     GGVYLR         +KRW+
Subjt:  MKLRKRALMEA---NKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM
A0A1S3CE85 uncharacterized protein LOC103499876 isoform X28.4e-1771.62Show/hide
Query:  MKLRKRALMEA---NKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM
        MKLRKRALMEA   N+GGE+RKVHIIYFLSRMGHVEQPHLIRVHHLAGA     GGVYLR         +KRW+
Subjt:  MKLRKRALMEA---NKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM
A0A1S3CEM9 protein UPSTREAM OF FLC isoform X39.7e-1370Show/hide
Query:  NKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM
        N+GGE+RKVHIIYFLSRMGHVEQPHLIRVHHLAGA     GGVYLR         +KRW+
Subjt:  NKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM
A0A5D3CFC8 Protein UPSTREAM OF FLC isoform X19.7e-1370Show/hide
Query:  NKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM
        N+GGE+RKVHIIYFLSRMGHVEQPHLIRVHHLAGA     GGVYLR         +KRW+
Subjt:  NKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM
A0A6J1CV58 protein UPSTREAM OF FLC isoform X17.4e-1362.16Show/hide
Query:  MKLRKRA--LMEA-NKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM
        M+L+KR+  LMEA NKGGE+R+VHI+YFLSRMGHVEQPHLIRVHHLA A      GV+LR         +KRW+
Subjt:  MKLRKRA--LMEA-NKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM
SwissProt top hitse value%identityAlignment
Q9SYJ8 Protein SOSEKI 11.4e-0848.44Show/hide
Query:  MEAN-KGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM
        ME+N  GGEVR+V+++YFLSR GHV+ PHL+RVHHL+  G              VFL  +K+W+
Subjt:  MEAN-KGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM
Arabidopsis top hitse value%identityAlignment
AT1G05577.1 Domain of unknown function (DUF966)9.9e-1048.44Show/hide
Query:  MEAN-KGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM
        ME+N  GGEVR+V+++YFLSR GHV+ PHL+RVHHL+  G              VFL  +K+W+
Subjt:  MEAN-KGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCTTAGAAAGAGAGCGTTAATGGAGGCTAATAAAGGTGGAGAAGTTAGAAAAGTTCATATTATTTACTTTCTTAGCCGGATGGGACACGTGGAGCAACCCCATCT
CATCCGTGTTCATCATCTCGCCGGCGCCGGCGGAGGCGGAGGTGGCGGCGTTTATCTCCGAGGTATGGTTTGGGTTTTCCTTCTTTGTTTAAAAAGATGGATGAATTTTG
TTCATTCATCTCCTTTCTTGCGATTGAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGCTTAGAAAGAGAGCGTTAATGGAGGCTAATAAAGGTGGAGAAGTTAGAAAAGTTCATATTATTTACTTTCTTAGCCGGATGGGACACGTGGAGCAACCCCATCT
CATCCGTGTTCATCATCTCGCCGGCGCCGGCGGAGGCGGAGGTGGCGGCGTTTATCTCCGAGGTATGGTTTGGGTTTTCCTTCTTTGTTTAAAAAGATGGATGAATTTTG
TTCATTCATCTCCTTTCTTGCGATTGAATTAG
Protein sequenceShow/hide protein sequence
MKLRKRALMEANKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWMNFVHSSPFLRLN