; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G026390 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G026390
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING/U-box superfamily protein
Genome locationchr02:32820421..32823138
RNA-Seq ExpressionLsi02G026390
SyntenyLsi02G026390
Gene Ontology termsGO:0000209 - protein polyubiquitination (biological process)
GO:0032436 - positive regulation of proteasomal ubiquitin-dependent protein catabolic process (biological process)
GO:0000151 - ubiquitin ligase complex (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0031624 - ubiquitin conjugating enzyme binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR002867 - IBR domain
IPR031127 - E3 ubiquitin ligase RBR family
IPR044066 - TRIAD supradomain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058684.1 putative E3 ubiquitin-protein ligase RNF217 [Cucumis melo var. makuwa]2.9e-4970.99Show/hide
Query:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKML
        MLP E AEKWNKALCE +Y E E+V CPFKDCSVGMI+E++A        K+RDCECP CHRLFC TC VPWH GVTC+ Y+ L K +  GRD+ILMK L
Subjt:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKML

Query:  ASKMKWMKCPKCKIFVEKVSGCLHITCRCRF
        AS+MKWMKCPKC+ FVEKVSGCLHITCRCRF
Subjt:  ASKMKWMKCPKCKIFVEKVSGCLHITCRCRF

KAE8646419.1 hypothetical protein Csa_016113 [Cucumis sativus]5.5e-4868.7Show/hide
Query:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKML
        MLPKEI EKWNKALCE LYS  E+V CPFKDCSVG+ +E+        G  +RDCECP CHRLFCATC VPWH GVTC++Y+ L K +  GR++ILMK L
Subjt:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKML

Query:  ASKMKWMKCPKCKIFVEKVSGCLHITCRCRF
        AS+MKWMKCPKC  FVEK+ GCLHITCRCRF
Subjt:  ASKMKWMKCPKCKIFVEKVSGCLHITCRCRF

TYK10490.1 putative E3 ubiquitin-protein ligase RNF217 [Cucumis melo var. makuwa]1.0e-4970.99Show/hide
Query:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKML
        MLP E AEKWNKALCE +Y E E+V CPFKDCSVGMI+E++A        K+RDCECP CHRLFC TC VPWH GVTC+ Y+ L K +  GRD+ILMK L
Subjt:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKML

Query:  ASKMKWMKCPKCKIFVEKVSGCLHITCRCRF
        AS+MKWMKCPKC++FVEKVSGCLHITCRCRF
Subjt:  ASKMKWMKCPKCKIFVEKVSGCLHITCRCRF

XP_008461214.1 PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Cucumis melo]3.2e-4869.47Show/hide
Query:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKML
        MLP E AEKWNKALCE +Y E E+V CPFKDCSVGMI+E++A        K+RDCECP CHRLFC TC VPWH GVTC+ Y+ L K +   RD+ILM+ L
Subjt:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKML

Query:  ASKMKWMKCPKCKIFVEKVSGCLHITCRCRF
        AS+MKWMKCPKC++FVEKVSGCLHITCRCRF
Subjt:  ASKMKWMKCPKCKIFVEKVSGCLHITCRCRF

XP_022146079.1 probable E3 ubiquitin-protein ligase RNF217 [Momordica charantia]2.3e-4159.7Show/hide
Query:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMI-IEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGR--DDILM
        MLPK +AEKW++ALCEAL+ EAE+V CPFKDCS  M+ +EK      G    + + ECP CHRLFCA C VPWH  VTC++YQ   K+ +RGR  DD L+
Subjt:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMI-IEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGR--DDILM

Query:  KMLASKMKWMKCPKCKIFVEKVSGCLHITCRCRF
        K +A KM+WM+CP+CK FVEK  GCLHITCRC+F
Subjt:  KMLASKMKWMKCPKCKIFVEKVSGCLHITCRCRF

TrEMBL top hitse value%identityAlignment
A0A0A0K9X9 Uncharacterized protein4.3e-4667.97Show/hide
Query:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKML
        MLPKEI EKWNKALCE LYS  E+V CPFKDCSVG+ +E+        G  +RDCECP CHRLFCATC VPWH GVTC++Y+ L K +  GR++ILMK L
Subjt:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKML

Query:  ASKMKWMKCPKCKIFVEKVSGCLHITCR
        AS+MKWMKCPKC  FVEK+ GCLHITCR
Subjt:  ASKMKWMKCPKCKIFVEKVSGCLHITCR

A0A1S3CDQ5 probable E3 ubiquitin-protein ligase RNF2171.6e-4869.47Show/hide
Query:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKML
        MLP E AEKWNKALCE +Y E E+V CPFKDCSVGMI+E++A        K+RDCECP CHRLFC TC VPWH GVTC+ Y+ L K +   RD+ILM+ L
Subjt:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKML

Query:  ASKMKWMKCPKCKIFVEKVSGCLHITCRCRF
        AS+MKWMKCPKC++FVEKVSGCLHITCRCRF
Subjt:  ASKMKWMKCPKCKIFVEKVSGCLHITCRCRF

A0A5A7UU31 Putative E3 ubiquitin-protein ligase RNF2171.4e-4970.99Show/hide
Query:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKML
        MLP E AEKWNKALCE +Y E E+V CPFKDCSVGMI+E++A        K+RDCECP CHRLFC TC VPWH GVTC+ Y+ L K +  GRD+ILMK L
Subjt:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKML

Query:  ASKMKWMKCPKCKIFVEKVSGCLHITCRCRF
        AS+MKWMKCPKC+ FVEKVSGCLHITCRCRF
Subjt:  ASKMKWMKCPKCKIFVEKVSGCLHITCRCRF

A0A5D3CGK1 Putative E3 ubiquitin-protein ligase RNF2174.9e-5070.99Show/hide
Query:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKML
        MLP E AEKWNKALCE +Y E E+V CPFKDCSVGMI+E++A        K+RDCECP CHRLFC TC VPWH GVTC+ Y+ L K +  GRD+ILMK L
Subjt:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKML

Query:  ASKMKWMKCPKCKIFVEKVSGCLHITCRCRF
        AS+MKWMKCPKC++FVEKVSGCLHITCRCRF
Subjt:  ASKMKWMKCPKCKIFVEKVSGCLHITCRCRF

A0A6J1CX43 probable E3 ubiquitin-protein ligase RNF2171.1e-4159.7Show/hide
Query:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMI-IEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGR--DDILM
        MLPK +AEKW++ALCEAL+ EAE+V CPFKDCS  M+ +EK      G    + + ECP CHRLFCA C VPWH  VTC++YQ   K+ +RGR  DD L+
Subjt:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMI-IEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGR--DDILM

Query:  KMLASKMKWMKCPKCKIFVEKVSGCLHITCRCRF
        K +A KM+WM+CP+CK FVEK  GCLHITCRC+F
Subjt:  KMLASKMKWMKCPKCKIFVEKVSGCLHITCRCRF

SwissProt top hitse value%identityAlignment
A4IIY1 Probable E3 ubiquitin-protein ligase RNF144A8.4e-0723.26Show/hide
Query:  MLPKEIAEKWNKALCE-ALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKM
        M+  EI +K+ K   E  +  +    +CP   C     ++++ +         +  +C  C   FC+ C   WH G  C +   +      G      K 
Subjt:  MLPKEIAEKWNKALCE-ALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKM

Query:  LASKMKWMKCPKCKIFVEKVSGCLHITCR
        L   +   +CPKCK+++E+  GC  + C+
Subjt:  LASKMKWMKCPKCKIFVEKVSGCLHITCR

D3YYI7 Probable E3 ubiquitin-protein ligase RNF2173.1e-0936.36Show/hide
Query:  ECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKMLASKMKW-----MKCPKCKIFVEKVSGCLHITC
        +CP C  ++C  C  PWH GV C +Y+         + D L++  AS+++       KCPKCKI +++  GC H+TC
Subjt:  ECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKMLASKMKW-----MKCPKCKIFVEKVSGCLHITC

P50876 E3 ubiquitin-protein ligase RNF144A6.4e-0725Show/hide
Query:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKML
        M+  EI +++ K     L  E E +F P +        +    L        +  +C  C   FC+TC   WH G  C +   +      G      KM 
Subjt:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKML

Query:  ASKMKWMKCPKCKIFVEKVSGCLHITCR
               +CPKCK+++E+  GC  + C+
Subjt:  ASKMKWMKCPKCKIFVEKVSGCLHITCR

Q4KLT0 Probable E3 ubiquitin-protein ligase RNF2176.9e-0934.72Show/hide
Query:  ECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKMLASKMKWMKCPKCKIFVEKVSGCLHITC
        +CP C  ++C  C  PWH GV C +Y+  +K  R   ++I       +    KCP+CK+ +++  GC H+TC
Subjt:  ECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKMLASKMKWMKCPKCKIFVEKVSGCLHITC

Q8TC41 Probable E3 ubiquitin-protein ligase RNF2175.3e-0936.36Show/hide
Query:  ECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKMLASKMKW-----MKCPKCKIFVEKVSGCLHITC
        +CP C  ++C  C  PWH GV C +Y+         + D L++  AS+++       KCPKCKI +++  GC H+TC
Subjt:  ECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKMLASKMKW-----MKCPKCKIFVEKVSGCLHITC

Arabidopsis top hitse value%identityAlignment
AT2G21420.1 IBR domain containing protein5.2e-2037.4Show/hide
Query:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKML
        +L   + E W + + E L   A++++CP++ CS  M++ K A+        +R   C  C RLFC  C VP H G++C  Y+ LN        D+ +K L
Subjt:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKML

Query:  ASKMKWMKCPKCKIFVEKVSGCLHITCRCRF
        A+K KW +C +C   VE   GC HITCRC F
Subjt:  ASKMKWMKCPKCKIFVEKVSGCLHITCRCRF

AT3G14250.1 RING/U-box superfamily protein3.3e-3039.85Show/hide
Query:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRG--RDDILMK
        ++PK++ ++W K LCE+L S  ++ +CPFKDCS  M++  E          +   EC  CHRLFC  C V WH G+ CD++Q      ++    DD L+ 
Subjt:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRG--RDDILMK

Query:  MLASKMKWMKCPKCKIFVEKVSGCLHITCRCRF
         +A   +W +CP CK +V+KV GC HI CRC +
Subjt:  MLASKMKWMKCPKCKIFVEKVSGCLHITCRCRF

AT3G53690.1 RING/U-box superfamily protein1.8e-3344.19Show/hide
Query:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKML
        +LPKE+ ++W  ALCEA+   +++ +CP+KDCS  + +E+  V       K++D ECP CHR+ C  C   WH  +TC+++Q L  A+ RGRDDIL+  +
Subjt:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKML

Query:  ASKMKWMKCPKCKIFVEKVSGCLHITCRC
        A + KW +CP CK ++EK  GCL++ CRC
Subjt:  ASKMKWMKCPKCKIFVEKVSGCLHITCRC

AT4G19670.1 RING/U-box superfamily protein1.5e-1935.59Show/hide
Query:  EVFCPFKDCSVGMIIEKEAVLMHGSGGKLRD--------CECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKMLASKMKWMKCPKCKIF
        +++CP+ +CS   +++ +  L  G                ECP C R  C  C VPWH  ++C+++QIL   D R  DDI +  LA   +W +C +C+I 
Subjt:  EVFCPFKDCSVGMIIEKEAVLMHGSGGKLRD--------CECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKMLASKMKWMKCPKCKIF

Query:  VEKVSGCLHITCRCRFGH
        +E   GC H+TCRC  GH
Subjt:  VEKVSGCLHITCRCRFGH

AT5G37560.1 RING/U-box superfamily protein3.6e-2133.59Show/hide
Query:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKML
        +L  ++ E W + + E L  +AE+++CP++ CS  M++ K  +        +R   C  C  LFC  C VPWH  ++C  Y+ ++    R  +D+++K+L
Subjt:  MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKML

Query:  ASKMKWMKCPKCKIFVEKVSGCLHITCRCRF
        A+   W +C +CK  +E   GC HITCRC +
Subjt:  ASKMKWMKCPKCKIFVEKVSGCLHITCRCRF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTACCGAAGGAAATAGCGGAGAAGTGGAACAAAGCACTTTGCGAAGCGCTTTATTCAGAAGCAGAGGAAGTGTTTTGCCCATTCAAGGATTGCTCTGTGGGAATGAT
CATTGAGAAGGAAGCAGTATTAATGCACGGATCAGGAGGCAAATTAAGGGATTGTGAATGTCCGTTTTGCCACAGACTCTTCTGCGCCACGTGCCTAGTCCCATGGCACG
GGGGAGTCACGTGCGACAAATATCAGATTCTTAATAAAGCAGATCGGAGGGGTAGAGACGACATTTTGATGAAAATGTTAGCCTCCAAAATGAAATGGATGAAATGCCCT
AAATGCAAAATCTTCGTTGAGAAGGTTTCTGGTTGTTTGCACATCACTTGCAGGTGTCGATTCGGTCACCTTGGTCTTCTACCCATGGTAGCTGCCAACCTAACTACGTA
TAATGTTTTCTTCACCTTAGTCTCCTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGCTACCGAAGGAAATAGCGGAGAAGTGGAACAAAGCACTTTGCGAAGCGCTTTATTCAGAAGCAGAGGAAGTGTTTTGCCCATTCAAGGATTGCTCTGTGGGAATGAT
CATTGAGAAGGAAGCAGTATTAATGCACGGATCAGGAGGCAAATTAAGGGATTGTGAATGTCCGTTTTGCCACAGACTCTTCTGCGCCACGTGCCTAGTCCCATGGCACG
GGGGAGTCACGTGCGACAAATATCAGATTCTTAATAAAGCAGATCGGAGGGGTAGAGACGACATTTTGATGAAAATGTTAGCCTCCAAAATGAAATGGATGAAATGCCCT
AAATGCAAAATCTTCGTTGAGAAGGTTTCTGGTTGTTTGCACATCACTTGCAGGTGTCGATTCGGTCACCTTGGTCTTCTACCCATGGTAGCTGCCAACCTAACTACGTA
TAATGTTTTCTTCACCTTAGTCTCCTCATAG
Protein sequenceShow/hide protein sequence
MLPKEIAEKWNKALCEALYSEAEEVFCPFKDCSVGMIIEKEAVLMHGSGGKLRDCECPFCHRLFCATCLVPWHGGVTCDKYQILNKADRRGRDDILMKMLASKMKWMKCP
KCKIFVEKVSGCLHITCRCRFGHLGLLPMVAANLTTYNVFFTLVSS