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Lsi02G026870 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G026870
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSerine-rich protein-related
Genome locationchr02:33304585..33304878
RNA-Seq ExpressionLsi02G026870
SyntenyLsi02G026870
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058731.1 uncharacterized protein E6C27_scaffold339G002010 [Cucumis melo var. makuwa]1.1e-3378.85Show/hide
Query:  MANKTGFSSRLCLCAPTTHPGSFRCSLHRRPSKASDKT----APPRGSQSKAA--TTDH-LVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVVASDHR
        MANKT  SSRLCLCAPTTHPGSFRCSLHRRPS +S KT     PP GSQSKAA  TTDH  +KAFLMQIVKPSSH LQRR NFQPKPSRFCN+V A D R
Subjt:  MANKTGFSSRLCLCAPTTHPGSFRCSLHRRPSKASDKT----APPRGSQSKAA--TTDH-LVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVVASDHR

Query:  LAVS
        LAVS
Subjt:  LAVS

KAG6593379.1 hypothetical protein SDJN03_12855, partial [Cucurbita argyrosperma subsp. sororia]2.1e-2975Show/hide
Query:  MANKTGFSS-RLCLCAPTTHPGSFRCSLHRRPSKASDK--TAPPRGSQSKAATTDHLVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVVASDHRLAVS
        MANKT  SS RLCLCAPTTHPGSFRCSLHRR  KAS+K    PP G+QSKA +   LVKAFLMQ++KPSS DLQRRRNFQPKPSRFCN   ASD+ LAVS
Subjt:  MANKTGFSS-RLCLCAPTTHPGSFRCSLHRRPSKASDK--TAPPRGSQSKAATTDHLVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVVASDHRLAVS

KAG7014157.1 hypothetical protein SDJN02_24331, partial [Cucurbita argyrosperma subsp. argyrosperma]3.8e-3177.23Show/hide
Query:  MANKTGFSSRLCLCAPTTHPGSFRCSLHRRPSKASDKTAPPRGSQSKAATTDH----LVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVVASDHRLAV
        MANKT  SSRLCLCAPT+HPGSFRCSLHRRP KASDKT   RGSQSKAAT       L K FLMQ +KPSSHDL RRRNFQPKPSRFCN   ASDHRL V
Subjt:  MANKTGFSSRLCLCAPTTHPGSFRCSLHRRPSKASDKTAPPRGSQSKAATTDH----LVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVVASDHRLAV

Query:  S
        S
Subjt:  S

KGN45240.1 hypothetical protein Csa_016736 [Cucumis sativus]7.0e-3378.1Show/hide
Query:  MANKTGFSSRLCLCAPTTHPGSFRCSLHRRPSKASDKTAP-----PRGSQSKAA--TTD-HLVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVVASDH
        M NKT  SSRLCLCAPTTHPGSFRCSLHRR S +S KT P     PRGSQSKAA  TTD HL+KAFLMQIVKPSSHDLQRR +F+PKPSRFC+VV ASD 
Subjt:  MANKTGFSSRLCLCAPTTHPGSFRCSLHRRPSKASDKTAP-----PRGSQSKAA--TTD-HLVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVVASDH

Query:  RLAVS
        RLAVS
Subjt:  RLAVS

XP_008461151.1 PREDICTED: uncharacterized protein LOC103499822 [Cucumis melo]4.1e-3377.88Show/hide
Query:  MANKTGFSSRLCLCAPTTHPGSFRCSLHRRPSKASDKT----APPRGSQSKAA--TTDH-LVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVVASDHR
        M NKT  SSRLCLCAPTTHPGSFRCSLHRRPS +S KT     PP GSQSKAA  TTDH  +KAFLMQIVKPSSH LQRR NFQPKPSRFCN+V A D R
Subjt:  MANKTGFSSRLCLCAPTTHPGSFRCSLHRRPSKASDKT----APPRGSQSKAA--TTDH-LVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVVASDHR

Query:  LAVS
        LAVS
Subjt:  LAVS

TrEMBL top hitse value%identityAlignment
A0A0A0K698 Uncharacterized protein3.4e-3378.1Show/hide
Query:  MANKTGFSSRLCLCAPTTHPGSFRCSLHRRPSKASDKTAP-----PRGSQSKAA--TTD-HLVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVVASDH
        M NKT  SSRLCLCAPTTHPGSFRCSLHRR S +S KT P     PRGSQSKAA  TTD HL+KAFLMQIVKPSSHDLQRR +F+PKPSRFC+VV ASD 
Subjt:  MANKTGFSSRLCLCAPTTHPGSFRCSLHRRPSKASDKTAP-----PRGSQSKAA--TTD-HLVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVVASDH

Query:  RLAVS
        RLAVS
Subjt:  RLAVS

A0A1S3CEH6 uncharacterized protein LOC1034998222.0e-3377.88Show/hide
Query:  MANKTGFSSRLCLCAPTTHPGSFRCSLHRRPSKASDKT----APPRGSQSKAA--TTDH-LVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVVASDHR
        M NKT  SSRLCLCAPTTHPGSFRCSLHRRPS +S KT     PP GSQSKAA  TTDH  +KAFLMQIVKPSSH LQRR NFQPKPSRFCN+V A D R
Subjt:  MANKTGFSSRLCLCAPTTHPGSFRCSLHRRPSKASDKT----APPRGSQSKAA--TTDH-LVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVVASDHR

Query:  LAVS
        LAVS
Subjt:  LAVS

A0A5A7UZ19 Uncharacterized protein5.2e-3478.85Show/hide
Query:  MANKTGFSSRLCLCAPTTHPGSFRCSLHRRPSKASDKT----APPRGSQSKAA--TTDH-LVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVVASDHR
        MANKT  SSRLCLCAPTTHPGSFRCSLHRRPS +S KT     PP GSQSKAA  TTDH  +KAFLMQIVKPSSH LQRR NFQPKPSRFCN+V A D R
Subjt:  MANKTGFSSRLCLCAPTTHPGSFRCSLHRRPSKASDKT----APPRGSQSKAA--TTDH-LVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVVASDHR

Query:  LAVS
        LAVS
Subjt:  LAVS

A0A6J1DD51 uncharacterized protein LOC1110193815.2e-2673.33Show/hide
Query:  MANKTGFS----SRLCLCAPTTHPGSFRCSLHRRPSKASDKTAPPRGSQSKAATTDHLVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNV
        MA KT  S    SRLCLCAPTTHPGSFRCSLHRRP KASDK+     S         LVKAFLMQI+KPSSHDLQRRRNFQPKPSRFCNV
Subjt:  MANKTGFS----SRLCLCAPTTHPGSFRCSLHRRPSKASDKTAPPRGSQSKAATTDHLVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNV

A0A6P6BJ71 uncharacterized protein LOC1113185188.1e-1952.78Show/hide
Query:  SSRLCLCAPTTHPGSFRCSLHRRPSKASDKTAPP----RGSQSKAA--------------TTDHLVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVVA
        S+R CLC+PT HPGSFRCSLHR   K S K+A P    +  +SKAA              +   L+KAFLMQI+KPSSHD+QRRRNF PKP+RFC  + +
Subjt:  SSRLCLCAPTTHPGSFRCSLHRRPSKASDKTAPP----RGSQSKAA--------------TTDHLVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVVA

Query:  SDHRLAVS
        S++ +AVS
Subjt:  SDHRLAVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G24577.1 unknown protein2.4e-0741.51Show/hide
Query:  MANKTGFSSRLCLCAPTTHPGSFRCSLHRRPSKASDKTAPPRGSQSKAATTDH
        ++ +T  +  +C+C+PTTHPGSF+C LHR PS   +K+      QS     DH
Subjt:  MANKTGFSSRLCLCAPTTHPGSFRCSLHRRPSKASDKTAPPRGSQSKAATTDH

AT5G11090.1 serine-rich protein-related9.5e-1236.19Show/hide
Query:  SRLCLCAPTTHPGSFRCSLHRRPSKASDKTAPPRGSQSKAATTDHL---------------------VKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVV
        SR C+C+PTTHPGSFRCSLH+         A P G  + + TT+ L                     V+  L  +++PSSH L+RR  +QP+PSR   + 
Subjt:  SRLCLCAPTTHPGSFRCSLHRRPSKASDKTAPPRGSQSKAATTDHL---------------------VKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVV

Query:  VASDH
         A ++
Subjt:  VASDH

AT5G20370.1 serine-rich protein-related3.1e-0735.58Show/hide
Query:  SSRLCLCAPTTHPGSFRCSLHRRPSKASDKTAPP-------RGSQS----------KAATTDHLVK-----------AFLMQIVKPSSHDLQRRRNFQPK
        + R CLC+PTTHPGSFRCS HRR      KT          RG  +          K A  + L K           +    + KPSS    RR  F+P+
Subjt:  SSRLCLCAPTTHPGSFRCSLHRRPSKASDKTAPP-------RGSQS----------KAATTDHLVK-----------AFLMQIVKPSSHDLQRRRNFQPK

Query:  PSRF
         SRF
Subjt:  PSRF

AT5G25280.1 serine-rich protein-related4.7e-1135.24Show/hide
Query:  SSRLCLCAPTTHPGSFRCSLHRRPSKASDKTAPPRGSQSKAATTDHL---------------------VKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNV
        S R C+C+PTTHPGSFRCSLH+         A P G  + + TT+ L                     V+  L  +++PSSH L+RR  ++P+ SR  ++
Subjt:  SSRLCLCAPTTHPGSFRCSLHRRPSKASDKTAPPRGSQSKAATTDHL---------------------VKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNV

Query:  VVASD
          A D
Subjt:  VVASD

AT5G25280.2 serine-rich protein-related4.7e-1135.24Show/hide
Query:  SSRLCLCAPTTHPGSFRCSLHRRPSKASDKTAPPRGSQSKAATTDHL---------------------VKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNV
        S R C+C+PTTHPGSFRCSLH+         A P G  + + TT+ L                     V+  L  +++PSSH L+RR  ++P+ SR  ++
Subjt:  SSRLCLCAPTTHPGSFRCSLHRRPSKASDKTAPPRGSQSKAATTDHL---------------------VKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNV

Query:  VVASD
          A D
Subjt:  VVASD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAACAAAACCGGTTTCTCTTCCCGCCTCTGTCTCTGTGCTCCGACCACCCATCCCGGCTCTTTCCGCTGCAGTCTCCACCGCCGTCCGTCGAAGGCCTCCGACAA
AACGGCGCCTCCGCGTGGAAGCCAATCGAAAGCAGCGACGACGGATCATCTCGTTAAGGCGTTTCTGATGCAGATCGTAAAGCCGTCGAGTCACGATCTCCAGAGACGGA
GGAATTTCCAGCCTAAACCTTCTCGATTTTGCAATGTCGTCGTCGCTTCGGATCATCGATTGGCTGTTTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGAACAAAACCGGTTTCTCTTCCCGCCTCTGTCTCTGTGCTCCGACCACCCATCCCGGCTCTTTCCGCTGCAGTCTCCACCGCCGTCCGTCGAAGGCCTCCGACAA
AACGGCGCCTCCGCGTGGAAGCCAATCGAAAGCAGCGACGACGGATCATCTCGTTAAGGCGTTTCTGATGCAGATCGTAAAGCCGTCGAGTCACGATCTCCAGAGACGGA
GGAATTTCCAGCCTAAACCTTCTCGATTTTGCAATGTCGTCGTCGCTTCGGATCATCGATTGGCTGTTTCTTGA
Protein sequenceShow/hide protein sequence
MANKTGFSSRLCLCAPTTHPGSFRCSLHRRPSKASDKTAPPRGSQSKAATTDHLVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVVASDHRLAVS