; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G027270 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G027270
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTail fiber
Genome locationchr02:33596588..33599036
RNA-Seq ExpressionLsi02G027270
SyntenyLsi02G027270
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058769.1 hypothetical protein E6C27_scaffold339G002430 [Cucumis melo var. makuwa]7.2e-8277.31Show/hide
Query:  MGSSKRWATTISRTASSLYFLLIFFQIPLFRVKCRETLCTSPLELTCSQLLASEVFPASVVKAILHPGAIAKAIFKNKPIPSFNSLPKLYKFI-------
        MGSS RWATTIS TASSLYFL+I FQIPLFRV+CR TLCT+PLELTCSQLLASEVF  SVVK +L+PGAIAKAIF NKPIP FNSLPKLYKFI       
Subjt:  MGSSKRWATTISRTASSLYFLLIFFQIPLFRVKCRETLCTSPLELTCSQLLASEVFPASVVKAILHPGAIAKAIFKNKPIPSFNSLPKLYKFI-------

Query:  ------------------HVIAGSYLAVGGGVMGVVRAGSGRMSLFGCLIAMWGIVWRKSSYLNPNKEKEISQIYSTMFLALLLAFLSVRKDVRRIVRTL
                           VIAGSYLAVGGG+MG+VRAG GRMSLFGCLI MWGIVWRKSSYLNPNKEKEISQIY TMFL LLLAFLSVRKDVRRIVRTL
Subjt:  ------------------HVIAGSYLAVGGGVMGVVRAGSGRMSLFGCLIAMWGIVWRKSSYLNPNKEKEISQIYSTMFLALLLAFLSVRKDVRRIVRTL

Query:  KPQSNPFSSSNKLKRR
        KPQSNPFS SNK KR+
Subjt:  KPQSNPFSSSNKLKRR

TYK10563.1 hypothetical protein E5676_scaffold459G002170 [Cucumis melo var. makuwa]2.3e-8076.61Show/hide
Query:  MGSSKRWATTISRTASSLYFLLIFFQIPLF--RVKCRETLCTSPLELTCSQLLASEVFPASVVKAILHPGAIAKAIFKNKPIPSFNSLPKLYKFI-----
        MGSS RWATTIS TASSLYFL+I FQIPLF  RV+CR TLCT+PLELTCSQLLASEVF  SVVK +L+PGAIAKAIF NKPIP FNSLPKLYKFI     
Subjt:  MGSSKRWATTISRTASSLYFLLIFFQIPLF--RVKCRETLCTSPLELTCSQLLASEVFPASVVKAILHPGAIAKAIFKNKPIPSFNSLPKLYKFI-----

Query:  --------------------HVIAGSYLAVGGGVMGVVRAGSGRMSLFGCLIAMWGIVWRKSSYLNPNKEKEISQIYSTMFLALLLAFLSVRKDVRRIVR
                             VIAGSYLAVGGG+MG+VRAG GRMSLFGCLI MWGIVWRKSSYLNPNKEKEISQIY TMFL LLLAFLSVRKDVRRIVR
Subjt:  --------------------HVIAGSYLAVGGGVMGVVRAGSGRMSLFGCLIAMWGIVWRKSSYLNPNKEKEISQIYSTMFLALLLAFLSVRKDVRRIVR

Query:  TLKPQSNPFSSSNKLKRR
        TLKPQSNPFS SNK KR+
Subjt:  TLKPQSNPFSSSNKLKRR

XP_008461086.1 PREDICTED: uncharacterized protein LOC103499782 [Cucumis melo]2.9e-8381.86Show/hide
Query:  MGSSKRWATTISRTASSLYFLLIFFQIPLFRVKCRETLCTSPLELTCSQLLASEVFPASVVKAILHPGAIAKAIFKNKPIPSFNSLPKLYKFI-------
        MGSS RWATTIS TASSLYFL+I FQIPLFRV+CR TLCT+PLELTCSQLLASEVF  SVVK +L+PGAIAKAIF NKPIP FNSLPKLYKFI       
Subjt:  MGSSKRWATTISRTASSLYFLLIFFQIPLFRVKCRETLCTSPLELTCSQLLASEVFPASVVKAILHPGAIAKAIFKNKPIPSFNSLPKLYKFI-------

Query:  ------HVIAGSYLAVGGGVMGVVRAGSGRMSLFGCLIAMWGIVWRKSSYLNPNKEKEISQIYSTMFLALLLAFLSVRKDVRRIVRTLKPQSNPFSSSNK
               VIAGSYLAVGGG+MG+VRAG GRMSLFGCLI MWGIVWRKSSYLNPNKEKEISQIY TMFL LLLAFLSVRKDVRRIVRTLKPQSNPFS SNK
Subjt:  ------HVIAGSYLAVGGGVMGVVRAGSGRMSLFGCLIAMWGIVWRKSSYLNPNKEKEISQIYSTMFLALLLAFLSVRKDVRRIVRTLKPQSNPFSSSNK

Query:  LKRR
         KR+
Subjt:  LKRR

XP_011659532.1 uncharacterized protein LOC101222216 [Cucumis sativus]2.9e-8381.37Show/hide
Query:  MGSSKRWATTISRTASSLYFLLIFFQIPLFRVKCRETLCTSPLELTCSQLLASEVFPASVVKAILHPGAIAKAIFKNKPIPSFNSLPKLYKFIH------
        MGSSKRWATTIS TASSLYFL+I FQIPLFRV+CR  LCT+PLELTCSQLLASEVF AS+VK +L+PGAIAKAIF NKPIP F SLPKLYKFIH      
Subjt:  MGSSKRWATTISRTASSLYFLLIFFQIPLFRVKCRETLCTSPLELTCSQLLASEVFPASVVKAILHPGAIAKAIFKNKPIPSFNSLPKLYKFIH------

Query:  -------VIAGSYLAVGGGVMGVVRAGSGRMSLFGCLIAMWGIVWRKSSYLNPNKEKEISQIYSTMFLALLLAFLSVRKDVRRIVRTLKPQSNPFSSSNK
               VIAGSYLAVGGG+MG+VRAG GRMSLFGCLI +WGIVWRKSSYLNPNKEKEISQIY TMFL LLLAFLSVRKDVRRIVRTLKPQ NPFSSSNK
Subjt:  -------VIAGSYLAVGGGVMGVVRAGSGRMSLFGCLIAMWGIVWRKSSYLNPNKEKEISQIYSTMFLALLLAFLSVRKDVRRIVRTLKPQSNPFSSSNK

Query:  LKRR
         KR+
Subjt:  LKRR

XP_038898492.1 uncharacterized protein LOC120086115 [Benincasa hispida]5.9e-8482.61Show/hide
Query:  MGSSKRWATTISRTASSLYFLLIFFQIPLFRVKCRETLCTSPLELTCSQLLASEVFPASVVKAILHPGAIAKAIFKNKPIPSFNSLPKLYKFIH------
        MGSSKRWATTISRTASSLYF+LIFFQIPLFRV CR TLCT+PLELTCSQLLASE FP  VVK+IL+PGAIAKAIFKNKPIP FNSLPKLYKFIH      
Subjt:  MGSSKRWATTISRTASSLYFLLIFFQIPLFRVKCRETLCTSPLELTCSQLLASEVFPASVVKAILHPGAIAKAIFKNKPIPSFNSLPKLYKFIH------

Query:  ----------VIAGSYLAVGGGVMGVVRAGSGRMSLFGCLIAMWGIVWRKSSYLNPNKEKEISQIYSTMFLALLLAFLSVRKDVRRIVRTLKPQSNPFSS
                  VIAGSYLAVGGG+MG+VRAG GRMSLFGCLIAMWGIVWRKSSYLNPN  KEISQIY TMFLALLLAF+SVRKDVRRIVRTLKPQSNP SS
Subjt:  ----------VIAGSYLAVGGGVMGVVRAGSGRMSLFGCLIAMWGIVWRKSSYLNPNKEKEISQIYSTMFLALLLAFLSVRKDVRRIVRTLKPQSNPFSS

Query:  SNKLKRR
        SNK KR+
Subjt:  SNKLKRR

TrEMBL top hitse value%identityAlignment
A0A0A0K6D6 Uncharacterized protein3.5e-8276.85Show/hide
Query:  MGSSKRWATTISRTASSLYFLLIFFQIPLFRVKCRETLCTSPLELTCSQLLASEVFPASVVKAILHPGAIAKAIFKNKPIPSFNSLPKLYKFIH------
        MGSSKRWATTIS TASSLYFL+I FQIPLFRV+CR  LCT+PLELTCSQLLASEVF AS+VK +L+PGAIAKAIF NKPIP F SLPKLYKFIH      
Subjt:  MGSSKRWATTISRTASSLYFLLIFFQIPLFRVKCRETLCTSPLELTCSQLLASEVFPASVVKAILHPGAIAKAIFKNKPIPSFNSLPKLYKFIH------

Query:  -------------------VIAGSYLAVGGGVMGVVRAGSGRMSLFGCLIAMWGIVWRKSSYLNPNKEKEISQIYSTMFLALLLAFLSVRKDVRRIVRTL
                           VIAGSYLAVGGG+MG+VRAG GRMSLFGCLI +WGIVWRKSSYLNPNKEKEISQIY TMFL LLLAFLSVRKDVRRIVRTL
Subjt:  -------------------VIAGSYLAVGGGVMGVVRAGSGRMSLFGCLIAMWGIVWRKSSYLNPNKEKEISQIYSTMFLALLLAFLSVRKDVRRIVRTL

Query:  KPQSNPFSSSNKLKRR
        KPQ NPFSSSNK KR+
Subjt:  KPQSNPFSSSNKLKRR

A0A1S3CDX1 uncharacterized protein LOC1034997821.4e-8381.86Show/hide
Query:  MGSSKRWATTISRTASSLYFLLIFFQIPLFRVKCRETLCTSPLELTCSQLLASEVFPASVVKAILHPGAIAKAIFKNKPIPSFNSLPKLYKFI-------
        MGSS RWATTIS TASSLYFL+I FQIPLFRV+CR TLCT+PLELTCSQLLASEVF  SVVK +L+PGAIAKAIF NKPIP FNSLPKLYKFI       
Subjt:  MGSSKRWATTISRTASSLYFLLIFFQIPLFRVKCRETLCTSPLELTCSQLLASEVFPASVVKAILHPGAIAKAIFKNKPIPSFNSLPKLYKFI-------

Query:  ------HVIAGSYLAVGGGVMGVVRAGSGRMSLFGCLIAMWGIVWRKSSYLNPNKEKEISQIYSTMFLALLLAFLSVRKDVRRIVRTLKPQSNPFSSSNK
               VIAGSYLAVGGG+MG+VRAG GRMSLFGCLI MWGIVWRKSSYLNPNKEKEISQIY TMFL LLLAFLSVRKDVRRIVRTLKPQSNPFS SNK
Subjt:  ------HVIAGSYLAVGGGVMGVVRAGSGRMSLFGCLIAMWGIVWRKSSYLNPNKEKEISQIYSTMFLALLLAFLSVRKDVRRIVRTLKPQSNPFSSSNK

Query:  LKRR
         KR+
Subjt:  LKRR

A0A5A7UZ20 Uncharacterized protein3.5e-8277.31Show/hide
Query:  MGSSKRWATTISRTASSLYFLLIFFQIPLFRVKCRETLCTSPLELTCSQLLASEVFPASVVKAILHPGAIAKAIFKNKPIPSFNSLPKLYKFI-------
        MGSS RWATTIS TASSLYFL+I FQIPLFRV+CR TLCT+PLELTCSQLLASEVF  SVVK +L+PGAIAKAIF NKPIP FNSLPKLYKFI       
Subjt:  MGSSKRWATTISRTASSLYFLLIFFQIPLFRVKCRETLCTSPLELTCSQLLASEVFPASVVKAILHPGAIAKAIFKNKPIPSFNSLPKLYKFI-------

Query:  ------------------HVIAGSYLAVGGGVMGVVRAGSGRMSLFGCLIAMWGIVWRKSSYLNPNKEKEISQIYSTMFLALLLAFLSVRKDVRRIVRTL
                           VIAGSYLAVGGG+MG+VRAG GRMSLFGCLI MWGIVWRKSSYLNPNKEKEISQIY TMFL LLLAFLSVRKDVRRIVRTL
Subjt:  ------------------HVIAGSYLAVGGGVMGVVRAGSGRMSLFGCLIAMWGIVWRKSSYLNPNKEKEISQIYSTMFLALLLAFLSVRKDVRRIVRTL

Query:  KPQSNPFSSSNKLKRR
        KPQSNPFS SNK KR+
Subjt:  KPQSNPFSSSNKLKRR

A0A5D3CFA3 Uncharacterized protein1.1e-8076.61Show/hide
Query:  MGSSKRWATTISRTASSLYFLLIFFQIPLF--RVKCRETLCTSPLELTCSQLLASEVFPASVVKAILHPGAIAKAIFKNKPIPSFNSLPKLYKFI-----
        MGSS RWATTIS TASSLYFL+I FQIPLF  RV+CR TLCT+PLELTCSQLLASEVF  SVVK +L+PGAIAKAIF NKPIP FNSLPKLYKFI     
Subjt:  MGSSKRWATTISRTASSLYFLLIFFQIPLF--RVKCRETLCTSPLELTCSQLLASEVFPASVVKAILHPGAIAKAIFKNKPIPSFNSLPKLYKFI-----

Query:  --------------------HVIAGSYLAVGGGVMGVVRAGSGRMSLFGCLIAMWGIVWRKSSYLNPNKEKEISQIYSTMFLALLLAFLSVRKDVRRIVR
                             VIAGSYLAVGGG+MG+VRAG GRMSLFGCLI MWGIVWRKSSYLNPNKEKEISQIY TMFL LLLAFLSVRKDVRRIVR
Subjt:  --------------------HVIAGSYLAVGGGVMGVVRAGSGRMSLFGCLIAMWGIVWRKSSYLNPNKEKEISQIYSTMFLALLLAFLSVRKDVRRIVR

Query:  TLKPQSNPFSSSNKLKRR
        TLKPQSNPFS SNK KR+
Subjt:  TLKPQSNPFSSSNKLKRR

A0A6J1JWG5 uncharacterized protein LOC1114885014.1e-6768.37Show/hide
Query:  MGSSKRWATTISRTASSLYFLLIFFQIPLFRVKCR-------ETLCTSPLELTCSQLLASEVFPASVVKAILHPGAIAKAIFKNKPIPSFNSLPKLYKFI
        M SSK+WATTISRTASSLYFLLIF Q+PLFRV CR          CT+PLELTCSQLL+S+VFPA VV+ +L+PGAIAKAIFKNKPIP F SLPK+YKFI
Subjt:  MGSSKRWATTISRTASSLYFLLIFFQIPLFRVKCR-------ETLCTSPLELTCSQLLASEVFPASVVKAILHPGAIAKAIFKNKPIPSFNSLPKLYKFI

Query:  -----------------HVIAGSYLAVGGGVMGVVRAGSGRMSLFGCLIAMWGIVWRKSSYLNPNKEKEISQIYSTMFLALLLAFLSVRKDVRRIVRTLK
                          VIAGSYLAVGG +MG+VR GSGRMSLFGCL+AMWGIVWRKSSY N N  K+ S++Y TMFLA+LLAFLSVRKDVRRIVR +K
Subjt:  -----------------HVIAGSYLAVGGGVMGVVRAGSGRMSLFGCLIAMWGIVWRKSSYLNPNKEKEISQIYSTMFLALLLAFLSVRKDVRRIVRTLK

Query:  PQSNPFSSSNKLKRR
         Q NP S   K KRR
Subjt:  PQSNPFSSSNKLKRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G80200.1 unknown protein1.7e-2533.94Show/hide
Query:  SSKRWATTISRTASSLYFLLIFFQIPLFR-----------------------------VKCRETLCTSPLELTCSQLLASEVFPASVVKAILHPGAIAKA
        S K+WA+ IS  ASSL+ LLI FQIPLFR                             V CR   C +PLE+  S+L+A+++ P+S+VK +L+PGAI K+
Subjt:  SSKRWATTISRTASSLYFLLIFFQIPLFR-----------------------------VKCRETLCTSPLELTCSQLLASEVFPASVVKAILHPGAIAKA

Query:  IFKNKPIPSFNSLPKLYKF---------------IHVIAGSYLAVGGGVMGVVRAGSGRMSLFGCLIAMWGIVW------RKSSYLNPNKEKEISQIYST
        +F    IPS++ L + Y F               + V AGS L + G ++ + +    R++  G L+  WG++           +++P++     ++Y T
Subjt:  IFKNKPIPSFNSLPKLYKF---------------IHVIAGSYLAVGGGVMGVVRAGSGRMSLFGCLIAMWGIVW------RKSSYLNPNKEKEISQIYST

Query:  MFLALLLAFLSVRKDVRRIVR
        +FLA L AFLS+R DVR+I+R
Subjt:  MFLALLLAFLSVRKDVRRIVR

AT5G11280.1 unknown protein3.3e-3237.38Show/hide
Query:  GSSKRWATTISRTASSLYFLLIFFQIPLFRVKCRETLCTSPLELTCSQLLASEVFPASVVKAILHPGAIAKAIFKNKPIPSFNSLPKLYKF---------
        G SK W    +  ASS+YF+LI FQIPLFRV CR  +C+SP+ +T SQL++SE+FP  ++KA+L+PGA+   +  N   P + ++  +Y           
Subjt:  GSSKRWATTISRTASSLYFLLIFFQIPLFRVKCRETLCTSPLELTCSQLLASEVFPASVVKAILHPGAIAKAIFKNKPIPSFNSLPKLYKF---------

Query:  -----IHVIAGSYLAVGGGVMGVVRAGSGRMSLFGCLIAMWGIVWR--KSSYLNPNKEKEISQIYSTMFLALLLAFLSVRKDVRRIVRT--LKPQSNPFS
             + V+AGSY +V G  +G+++   GRMS+FG L+ +WG+V        +N +  K +  +Y TM LA++ AF  ++ D+R+  R    +P + P  
Subjt:  -----IHVIAGSYLAVGGGVMGVVRAGSGRMSLFGCLIAMWGIVWR--KSSYLNPNKEKEISQIYSTMFLALLLAFLSVRKDVRRIVRT--LKPQSNPFS

Query:  SSNKLK
        SS+K K
Subjt:  SSNKLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTTCCAAAAGATGGGCAACCACCATTTCTCGCACTGCCTCTTCTTTATATTTTCTTCTAATTTTCTTCCAAATTCCTCTTTTCAGAGTGAAATGCAGAGAGAC
ATTATGCACATCGCCACTTGAATTGACATGTTCTCAGTTGTTAGCAAGCGAGGTGTTTCCTGCATCTGTTGTAAAAGCAATTCTACATCCTGGAGCCATTGCAAAAGCTA
TCTTTAAGAACAAACCTATTCCATCCTTTAATAGCTTGCCAAAGCTATACAAGTTTATCCATGTTATTGCAGGAAGTTATTTGGCAGTAGGAGGAGGTGTGATGGGAGTG
GTTAGAGCTGGGAGTGGGAGAATGAGTCTGTTTGGTTGCCTTATTGCAATGTGGGGAATTGTTTGGAGGAAATCTTCATATCTAAATCCCAATAAGGAAAAGGAAATTAG
CCAAATCTATTCGACCATGTTTCTTGCTCTGCTTTTGGCTTTCTTGTCTGTTAGGAAGGATGTGAGGAGAATAGTACGTACCCTCAAACCTCAATCCAACCCTTTTTCTT
CATCCAACAAACTCAAACGCAGATGA
mRNA sequenceShow/hide mRNA sequence
ATTTTTTCCTGTTAAGTTATTTTCTTGGTTATGGGTTCTTCCAAAAGATGGGCAACCACCATTTCTCGCACTGCCTCTTCTTTATATTTTCTTCTAATTTTCTTCCAAAT
TCCTCTTTTCAGAGTGAAATGCAGAGAGACATTATGCACATCGCCACTTGAATTGACATGTTCTCAGTTGTTAGCAAGCGAGGTGTTTCCTGCATCTGTTGTAAAAGCAA
TTCTACATCCTGGAGCCATTGCAAAAGCTATCTTTAAGAACAAACCTATTCCATCCTTTAATAGCTTGCCAAAGCTATACAAGTTTATCCATGTTATTGCAGGAAGTTAT
TTGGCAGTAGGAGGAGGTGTGATGGGAGTGGTTAGAGCTGGGAGTGGGAGAATGAGTCTGTTTGGTTGCCTTATTGCAATGTGGGGAATTGTTTGGAGGAAATCTTCATA
TCTAAATCCCAATAAGGAAAAGGAAATTAGCCAAATCTATTCGACCATGTTTCTTGCTCTGCTTTTGGCTTTCTTGTCTGTTAGGAAGGATGTGAGGAGAATAGTACGTA
CCCTCAAACCTCAATCCAACCCTTTTTCTTCATCCAACAAACTCAAACGCAGATGAACCATTCAAAAAAACTTTGTTTAAGAAGAAAGGTCTCTCTGTTAAATTGCAAGT
TTACTCCTTGAATTTTGAGGTTTGTGTCTATTTAAAGTATCGGAGCTAAAATTGGAAAAGTACCGAGACTAAAACTGAACAAATTTTAGCTTTGATCAACTTAATAACAT
TTTACCTAAGGTTTGTGCTTAAAAAAAAAAAGAAAAAAGAAGACATTTTACCTAAGGTTGTAATAGTTTAACAAGGGTAAGCTACGGTAAGGCTGGCTAAAAGACAACTT
AATAGAACATTTTCATTGCATTGAAGAGATCTAATTTGCTTAATCAGAATTGATCCAATCAATTTGTTCGAATCTTCAAACACGTTTATATAATTACTCTAAATACCACA
CTGCATCACTTCTCAATTCTCACCTACATGTCCCACATGAATCTGGAGTCCTCTTGTCTTCAGCCTTCTAATAAAGTCACGGGCTATCTTCTAAAGTTCTAATTAGGAAA
CAGGCTATTATCAGTCATAACTATAACTAATATCAGTCATTTCAATGGTTGGGTGTGAGAGAGTTTTCATTTAGAATTCAAATCTTCATACTCCTACGTTTATCTCTGTC
AAAAAGTAAAACCAAACGAGTCGAAAGATGGAATACAATGAACAGACTAATCATCTTGATTCTTGCCTTTGCTACTATATTCAGAAGTCGTGCACAAAGACAGAAAATTT
TCATATTCTTGTTAAGAATCATTTCTATTATCCATACACTATATTCAATGTCAATATGAAGTTACGAAGTTCAGGAAGAACCTTCATATTCTCAGCCACTTTGTGAGAAT
TGGAAAAAGCCTCGGCATTTGGTCAAATCTTTGTTCTGCAAGTCATGCGGAAAACTCAATCTTCAAGCCAGTCGGCATAAATGCCAATCAACTTCTTAGACTCCTTTGAT
TCAAAGAATTGGTTCATTCTTGGCCCTTTATTCTTACAGTCGGTTGCGATTCCTCTGCTGCTTCTTAATCCAGCTTCGGCAGCAGCAGATGTTGTTGGAGAGGCACTACT
TACGCTCCCACGTTGTGATGCACTGCATGGCTCAAGCTTCTGTAGTTCTATTTTCTCCAAAACAAAGAAGACAATGGCAATAATTGATATCAATGCCTGTAATTTGACAA
TCACCAACCTTTGATTTCATGAAAACGATTCAAACAGTGATGAATTAGTAAATCCACATGGTTGACATTTACTAAA
Protein sequenceShow/hide protein sequence
MGSSKRWATTISRTASSLYFLLIFFQIPLFRVKCRETLCTSPLELTCSQLLASEVFPASVVKAILHPGAIAKAIFKNKPIPSFNSLPKLYKFIHVIAGSYLAVGGGVMGV
VRAGSGRMSLFGCLIAMWGIVWRKSSYLNPNKEKEISQIYSTMFLALLLAFLSVRKDVRRIVRTLKPQSNPFSSSNKLKRR