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Lsi02G027400 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G027400
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDNA photolyase family protein
Genome locationchr02:33663173..33665664
RNA-Seq ExpressionLsi02G027400
SyntenyLsi02G027400
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5957123.1 hypothetical protein HYC85_004348 [Camellia sinensis]2.4e-0432.82Show/hide
Query:  LNIASNGANFLYSVFVIDRHYMEPNPTAFFTGIVYGWTEPHSASSPESCGLGFEPHKARLALVASPRGAWR--GPHSLLGRDKEMEICWSLLRPSDFS--
        L  ASNG+ +LY VFVID HYMEP+PTAF               SP S   G    +  L  +     + +  G   L+ + +  E+ +  L+  D    
Subjt:  LNIASNGANFLYSVFVIDRHYMEPNPTAFFTGIVYGWTEPHSASSPESCGLGFEPHKARLALVASPRGAWR--GPHSLLGRDKEMEICWSLLRPSDFS--

Query:  -----------------QNHASAAGIEVFSP
                         +N+ASAAGIEVFSP
Subjt:  -----------------QNHASAAGIEVFSP

XP_028110694.1 (6-4)DNA photolyase isoform X1 [Camellia sinensis]3.1e-0432.82Show/hide
Query:  LNIASNGANFLYSVFVIDRHYMEPNPTAFFTGIVYGWTEPHSASSPESCGLGFEPHKARLALVASPRGAWR--GPHSLLGRDKEMEICWSLLRPSDFS--
        L  ASNG+ +LY VFVID HYMEP+PTAF               SP S   G    +  L  +     + +  G   L+ + +  E+ +  L+  D    
Subjt:  LNIASNGANFLYSVFVIDRHYMEPNPTAFFTGIVYGWTEPHSASSPESCGLGFEPHKARLALVASPRGAWR--GPHSLLGRDKEMEICWSLLRPSDFS--

Query:  -----------------QNHASAAGIEVFSP
                         +N+ASAAGIEVFSP
Subjt:  -----------------QNHASAAGIEVFSP

XP_028110695.1 (6-4)DNA photolyase isoform X2 [Camellia sinensis]3.1e-0432.82Show/hide
Query:  LNIASNGANFLYSVFVIDRHYMEPNPTAFFTGIVYGWTEPHSASSPESCGLGFEPHKARLALVASPRGAWR--GPHSLLGRDKEMEICWSLLRPSDFS--
        L  ASNG+ +LY VFVID HYMEP+PTAF               SP S   G    +  L  +     + +  G   L+ + +  E+ +  L+  D    
Subjt:  LNIASNGANFLYSVFVIDRHYMEPNPTAFFTGIVYGWTEPHSASSPESCGLGFEPHKARLALVASPRGAWR--GPHSLLGRDKEMEICWSLLRPSDFS--

Query:  -----------------QNHASAAGIEVFSP
                         +N+ASAAGIEVFSP
Subjt:  -----------------QNHASAAGIEVFSP

XP_028110696.1 (6-4)DNA photolyase isoform X3 [Camellia sinensis]3.1e-0432.82Show/hide
Query:  LNIASNGANFLYSVFVIDRHYMEPNPTAFFTGIVYGWTEPHSASSPESCGLGFEPHKARLALVASPRGAWR--GPHSLLGRDKEMEICWSLLRPSDFS--
        L  ASNG+ +LY VFVID HYMEP+PTAF               SP S   G    +  L  +     + +  G   L+ + +  E+ +  L+  D    
Subjt:  LNIASNGANFLYSVFVIDRHYMEPNPTAFFTGIVYGWTEPHSASSPESCGLGFEPHKARLALVASPRGAWR--GPHSLLGRDKEMEICWSLLRPSDFS--

Query:  -----------------QNHASAAGIEVFSP
                         +N+ASAAGIEVFSP
Subjt:  -----------------QNHASAAGIEVFSP

TrEMBL top hitse value%identityAlignment
A0A0A0KA87 Photolyase/cryptochrome alpha/beta domain-containing protein7.4e-0436.36Show/hide
Query:  LNIASNGANFLYSVFVIDRHYMEPNPTAFFTGIVYGWTE--PHSASSPESCGLGFEPHKARLALVASPRGAWRGPHSLLGRDKE---MEICWSLLRPSDF
        L  A+ GA FLY VFVID HYMEP+P+AF  G              S     L  +   +RL ++    G       L+   KE    ++C+       +
Subjt:  LNIASNGANFLYSVFVIDRHYMEPNPTAFFTGIVYGWTE--PHSASSPESCGLGFEPHKARLALVASPRGAWRGPHSLLGRDKE---MEICWSLLRPSDF

Query:  S------QNHASAAGIEVFSP
               QNHASAAGIEVFSP
Subjt:  S------QNHASAAGIEVFSP

A0A1S3CDX6 (6-4)DNA photolyase isoform X25.7e-0437.5Show/hide
Query:  LNIASNGANFLYSVFVIDRHYMEPNPTAFFTGIVYGWTEPHSASSPESCGLGFEPHKARLALVASPRGAWRGPHSLLGRDKEMEICWSLL-----RPSD-
        L  A+ GANFLY VFVID HYMEP+P+AF               SP S   G   ++ R  L            SL+  D  ++   S L      P + 
Subjt:  LNIASNGANFLYSVFVIDRHYMEPNPTAFFTGIVYGWTEPHSASSPESCGLGFEPHKARLALVASPRGAWRGPHSLLGRDKEMEICWSLL-----RPSD-

Query:  ----FSQNHASAAGIEVFSP
              +N ASAAGIEVFSP
Subjt:  ----FSQNHASAAGIEVFSP

A0A6J1KRI5 (6-4)DNA photolyase7.4e-0434.43Show/hide
Query:  LNIASNGANFLYSVFVIDRHYMEPNPTAFFTGIVYGWTE--PHSASSPESCGLGFEPHKARLALVASPRGAWRGPHSLLGRDKE----MEICWSLLRPSD
        L  A+ GANFLY VFVID HYM+P+P+AF  G              S     +  +   +RL ++         P  +L R  E     ++C+       
Subjt:  LNIASNGANFLYSVFVIDRHYMEPNPTAFFTGIVYGWTE--PHSASSPESCGLGFEPHKARLALVASPRGAWRGPHSLLGRDKE----MEICWSLLRPSD

Query:  FS------QNHASAAGIEVFSP
        +       QNHASAAG+EVFSP
Subjt:  FS------QNHASAAGIEVFSP

A0A7J7HWA3 Photolyase/cryptochrome alpha/beta domain-containing protein1.1e-0432.82Show/hide
Query:  LNIASNGANFLYSVFVIDRHYMEPNPTAFFTGIVYGWTEPHSASSPESCGLGFEPHKARLALVASPRGAWR--GPHSLLGRDKEMEICWSLLRPSDFS--
        L  ASNG+ +LY VFVID HYMEP+PTAF               SP S   G    +  L  +     + +  G   L+ + +  E+ +  L+  D    
Subjt:  LNIASNGANFLYSVFVIDRHYMEPNPTAFFTGIVYGWTEPHSASSPESCGLGFEPHKARLALVASPRGAWR--GPHSLLGRDKEMEICWSLLRPSDFS--

Query:  -----------------QNHASAAGIEVFSP
                         +N+ASAAGIEVFSP
Subjt:  -----------------QNHASAAGIEVFSP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G15620.1 DNA photolyase family protein2.5e-0459.38Show/hide
Query:  LNIASNGANFLYSVFVIDRHYMEPNPTAFFTG
        L  AS G+ F+Y VFVID HYME +P+AF  G
Subjt:  LNIASNGANFLYSVFVIDRHYMEPNPTAFFTG

AT3G15620.2 DNA photolyase family protein2.5e-0459.38Show/hide
Query:  LNIASNGANFLYSVFVIDRHYMEPNPTAFFTG
        L  AS G+ F+Y VFVID HYME +P+AF  G
Subjt:  LNIASNGANFLYSVFVIDRHYMEPNPTAFFTG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAATCCGGCATCTGAATATTGCGTCCAACGGCGCCAATTTTCTCTATTCCGTTTTCGTCATCGATCGGCATTACATGGAGCCTAATCCCACTGCGTTTTTCACCGG
GATCGTCTACGGCTGGACTGAACCGCATTCTGCTTCTTCTCCAGAGTCTTGTGGACTTGGATTTGAACCTCACAAAGCTCGGCTCGCGCTTGTTGCTTCTCCACGAGGAG
CCTGGCGAGGTCCTCATTCGCTGCTTGGAAGAGACAAGGAAATGGAAATTTGTTGGTCACTTTTGCGTCCATCTGATTTCTCGCAGAACCATGCATCTGCGGCTGGAATT
GAAGTCTTCTCTCCTTTCGTAGGCATTATTTATGCAACCCCTGTTGTTGAACTCTTGAAACTGGTTGATGTTTCTCAGAATCCAGTTCCAAAATGTCCTTGTCAAACTCT
TCTTTCTGCTGCAACTAGCCAATATTACACTGATTTCTCCTATTCCATAGAGGGCACATCATAA
mRNA sequenceShow/hide mRNA sequence
TACACGTTAGCAAAAAGTGCACCAATGTGCGCACGTTAGCAAGTTCCACGCTTCCATTTTGCTCCGAGAACACTTGCCGGGCTCCACCCAATGTGAGCAGCGATTCAACC
ATTTTCTCTTCAAAGTTAATGGCGTCTAATTCGAGTTCTTTGACGTGGCATGATAATCCGGCATCTGAATATTGCGTCCAACGGCGCCAATTTTCTCTATTCCGTTTTCG
TCATCGATCGGCATTACATGGAGCCTAATCCCACTGCGTTTTTCACCGGGATCGTCTACGGCTGGACTGAACCGCATTCTGCTTCTTCTCCAGAGTCTTGTGGACTTGGA
TTTGAACCTCACAAAGCTCGGCTCGCGCTTGTTGCTTCTCCACGAGGAGCCTGGCGAGGTCCTCATTCGCTGCTTGGAAGAGACAAGGAAATGGAAATTTGTTGGTCACT
TTTGCGTCCATCTGATTTCTCGCAGAACCATGCATCTGCGGCTGGAATTGAAGTCTTCTCTCCTTTCGTAGGCATTATTTATGCAACCCCTGTTGTTGAACTCTTGAAAC
TGGTTGATGTTTCTCAGAATCCAGTTCCAAAATGTCCTTGTCAAACTCTTCTTTCTGCTGCAACTAGCCAATATTACACTGATTTCTCCTATTCCATAGAGGGCACATCA
TAA
Protein sequenceShow/hide protein sequence
MIIRHLNIASNGANFLYSVFVIDRHYMEPNPTAFFTGIVYGWTEPHSASSPESCGLGFEPHKARLALVASPRGAWRGPHSLLGRDKEMEICWSLLRPSDFSQNHASAAGI
EVFSPFVGIIYATPVVELLKLVDVSQNPVPKCPCQTLLSAATSQYYTDFSYSIEGTS