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Lsi02G027430 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G027430
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description(6-4)DNA photolyase
Genome locationchr02:33675682..33676041
RNA-Seq ExpressionLsi02G027430
SyntenyLsi02G027430
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008461069.1 PREDICTED: uncharacterized protein LOC103499770 [Cucumis melo]2.2e-5291.8Show/hide
Query:  MATNLAVFHPAPIRASS--SSGKSEPNRRKAASPKWWSPIFGWSSEPDYVVSSAAE-QSVQNADPELDGGRARSRFAPGCFTEEKAKLLRMKTLESSTFH
        MATN AVFHP PIRASS  SSGKS+PNRR AA PKWWSPIFGWSSEPDYVVSSAAE QSVQNADPELDGGR  SRFAPGCFTEEKAKLLRMKTLESSTFH
Subjt:  MATNLAVFHPAPIRASS--SSGKSEPNRRKAASPKWWSPIFGWSSEPDYVVSSAAE-QSVQNADPELDGGRARSRFAPGCFTEEKAKLLRMKTLESSTFH

Query:  DIMYHSAIASRLASDLSDRSKK
        DIMYHSAIASRLASDLSDRSKK
Subjt:  DIMYHSAIASRLASDLSDRSKK
XP_022960101.1 uncharacterized protein LOC111460952 [Cucurbita moschata]4.1e-5189.08Show/hide
Query:  MATNLAVFHPAPIRASSSSGKSEPNRRKAASPKWWSPIFGWSSEPDYVVSSAAEQSVQNADPELDGGRARSRFAPGCFTEEKAKLLRMKTLESSTFHDIM
        MATNL VFH APIRA SSSGKSEPNRRKAA+PKWWSPIFGWSSEPDY+ SSAA+Q VQNADPELDGGR +S+F PGCFTEEKAKLLRMKTLESSTFHDIM
Subjt:  MATNLAVFHPAPIRASSSSGKSEPNRRKAASPKWWSPIFGWSSEPDYVVSSAAEQSVQNADPELDGGRARSRFAPGCFTEEKAKLLRMKTLESSTFHDIM

Query:  YHSAIASRLASDLSDRSKK
        YHSAIASRLASDLSDRSK+
Subjt:  YHSAIASRLASDLSDRSKK
XP_023004861.1 uncharacterized protein LOC111498038 [Cucurbita maxima]1.4e-5189.92Show/hide
Query:  MATNLAVFHPAPIRASSSSGKSEPNRRKAASPKWWSPIFGWSSEPDYVVSSAAEQSVQNADPELDGGRARSRFAPGCFTEEKAKLLRMKTLESSTFHDIM
        MATNL VFH APIRA SSSGKSEPNRRKAA+PKWWSPIFGWSSEPDY+ SSAA+Q VQNADPELDGGRA+S+F PGCFTEEKAKLLRMKTLESSTFHDIM
Subjt:  MATNLAVFHPAPIRASSSSGKSEPNRRKAASPKWWSPIFGWSSEPDYVVSSAAEQSVQNADPELDGGRARSRFAPGCFTEEKAKLLRMKTLESSTFHDIM

Query:  YHSAIASRLASDLSDRSKK
        YHSAIASRLASDLSDRSK+
Subjt:  YHSAIASRLASDLSDRSKK
XP_023514525.1 uncharacterized protein LOC111778781 [Cucurbita pepo subsp. pepo]7.0e-5189.08Show/hide
Query:  MATNLAVFHPAPIRASSSSGKSEPNRRKAASPKWWSPIFGWSSEPDYVVSSAAEQSVQNADPELDGGRARSRFAPGCFTEEKAKLLRMKTLESSTFHDIM
        MATNL VFH APIRA SSSGKSEPNRRKAA+PKWWSPIFGWSSEPDY+ SSAA+Q VQNADPELDGGR +S+F PGCFTEEKAKLLRMKTLESSTFHDIM
Subjt:  MATNLAVFHPAPIRASSSSGKSEPNRRKAASPKWWSPIFGWSSEPDYVVSSAAEQSVQNADPELDGGRARSRFAPGCFTEEKAKLLRMKTLESSTFHDIM

Query:  YHSAIASRLASDLSDRSKK
        YHSAIASRLASDLSDRSK+
Subjt:  YHSAIASRLASDLSDRSKK
XP_038898524.1 uncharacterized protein LOC120086132 [Benincasa hispida]8.8e-5493.28Show/hide
Query:  MATNLAVFHPAPIRASSSSGKSEPNRRKAASPKWWSPIFGWSSEPDYVVSSAAEQSVQNADPELDGGRARSRFAPGCFTEEKAKLLRMKTLESSTFHDIM
        MATNLAVFHPAPIRA SSSGKSEPNRRKA +PKWWSPIFGWSSEPDYV+SSAAEQSV NA+PEL+GGR RSRFAPGCFTEEKAKLLRMKTLESSTFHDIM
Subjt:  MATNLAVFHPAPIRASSSSGKSEPNRRKAASPKWWSPIFGWSSEPDYVVSSAAEQSVQNADPELDGGRARSRFAPGCFTEEKAKLLRMKTLESSTFHDIM

Query:  YHSAIASRLASDLSDRSKK
        YHSAIASRLASDLSDRSKK
Subjt:  YHSAIASRLASDLSDRSKK
TrEMBL top hitse value%identityAlignment
A0A0A0K8X0 Uncharacterized protein8.3e-5085.71Show/hide
Query:  MATNLAVFHPAPIRA------SSSSGKSEPNRRKAASPKWWSPIFGWSSEPDYVVSSAAE-QSVQNADPELDGGRARSRFAPGCFTEEKAKLLRMKTLES
        MATN AVFHPAPI A      SSSSGK +PNR  AA+PKWWSPIFGWSSEPDYVVSSAAE QS+QNADPEL GGR RSRFAPGCFTEEKAKLLRMKT ES
Subjt:  MATNLAVFHPAPIRA------SSSSGKSEPNRRKAASPKWWSPIFGWSSEPDYVVSSAAE-QSVQNADPELDGGRARSRFAPGCFTEEKAKLLRMKTLES

Query:  STFHDIMYHSAIASRLASDLSDRSKK
        STFHDIMYHSAIASRLASDLSDRSKK
Subjt:  STFHDIMYHSAIASRLASDLSDRSKK
A0A1S3CEC0 uncharacterized protein LOC1034997701.0e-5291.8Show/hide
Query:  MATNLAVFHPAPIRASS--SSGKSEPNRRKAASPKWWSPIFGWSSEPDYVVSSAAE-QSVQNADPELDGGRARSRFAPGCFTEEKAKLLRMKTLESSTFH
        MATN AVFHP PIRASS  SSGKS+PNRR AA PKWWSPIFGWSSEPDYVVSSAAE QSVQNADPELDGGR  SRFAPGCFTEEKAKLLRMKTLESSTFH
Subjt:  MATNLAVFHPAPIRASS--SSGKSEPNRRKAASPKWWSPIFGWSSEPDYVVSSAAE-QSVQNADPELDGGRARSRFAPGCFTEEKAKLLRMKTLESSTFH

Query:  DIMYHSAIASRLASDLSDRSKK
        DIMYHSAIASRLASDLSDRSKK
Subjt:  DIMYHSAIASRLASDLSDRSKK
A0A5D3CF29 Uncharacterized protein1.0e-5291.8Show/hide
Query:  MATNLAVFHPAPIRASS--SSGKSEPNRRKAASPKWWSPIFGWSSEPDYVVSSAAE-QSVQNADPELDGGRARSRFAPGCFTEEKAKLLRMKTLESSTFH
        MATN AVFHP PIRASS  SSGKS+PNRR AA PKWWSPIFGWSSEPDYVVSSAAE QSVQNADPELDGGR  SRFAPGCFTEEKAKLLRMKTLESSTFH
Subjt:  MATNLAVFHPAPIRASS--SSGKSEPNRRKAASPKWWSPIFGWSSEPDYVVSSAAE-QSVQNADPELDGGRARSRFAPGCFTEEKAKLLRMKTLESSTFH

Query:  DIMYHSAIASRLASDLSDRSKK
        DIMYHSAIASRLASDLSDRSKK
Subjt:  DIMYHSAIASRLASDLSDRSKK
A0A6J1H6P9 uncharacterized protein LOC1114609522.0e-5189.08Show/hide
Query:  MATNLAVFHPAPIRASSSSGKSEPNRRKAASPKWWSPIFGWSSEPDYVVSSAAEQSVQNADPELDGGRARSRFAPGCFTEEKAKLLRMKTLESSTFHDIM
        MATNL VFH APIRA SSSGKSEPNRRKAA+PKWWSPIFGWSSEPDY+ SSAA+Q VQNADPELDGGR +S+F PGCFTEEKAKLLRMKTLESSTFHDIM
Subjt:  MATNLAVFHPAPIRASSSSGKSEPNRRKAASPKWWSPIFGWSSEPDYVVSSAAEQSVQNADPELDGGRARSRFAPGCFTEEKAKLLRMKTLESSTFHDIM

Query:  YHSAIASRLASDLSDRSKK
        YHSAIASRLASDLSDRSK+
Subjt:  YHSAIASRLASDLSDRSKK
A0A6J1KTB2 uncharacterized protein LOC1114980386.8e-5289.92Show/hide
Query:  MATNLAVFHPAPIRASSSSGKSEPNRRKAASPKWWSPIFGWSSEPDYVVSSAAEQSVQNADPELDGGRARSRFAPGCFTEEKAKLLRMKTLESSTFHDIM
        MATNL VFH APIRA SSSGKSEPNRRKAA+PKWWSPIFGWSSEPDY+ SSAA+Q VQNADPELDGGRA+S+F PGCFTEEKAKLLRMKTLESSTFHDIM
Subjt:  MATNLAVFHPAPIRASSSSGKSEPNRRKAASPKWWSPIFGWSSEPDYVVSSAAEQSVQNADPELDGGRARSRFAPGCFTEEKAKLLRMKTLESSTFHDIM

Query:  YHSAIASRLASDLSDRSKK
        YHSAIASRLASDLSDRSK+
Subjt:  YHSAIASRLASDLSDRSKK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52720.1 unknown protein1.3e-2351.92Show/hide
Query:  IRASSSSGKSEPNRRKAASPKWWSPIFGWSSEPDYVVSSAAEQSVQNADPELDGGRARSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASD
        IRASS SG   P++ +  S  WW+P+FG  S+PDY+   ++  +V     ++ G  +  +F  GCFTEEKAK LR KT E+STFHD+MYHSAIASRLASD
Subjt:  IRASSSSGKSEPNRRKAASPKWWSPIFGWSSEPDYVVSSAAEQSVQNADPELDGGRARSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASD

Query:  LSDR
        ++ R
Subjt:  LSDR
AT3G15630.1 unknown protein2.8e-2152.63Show/hide
Query:  MATNLAVFHPAPIRASSSSGKSEPNRRK-AASPKWWSPIFGWSSEPDYVVSSAAEQSVQNADPELDGGRARSRFAPGCFTEEKAKLLRMKTLESSTFHDI
        MAT ++    + IRASS   +S+P R+K  +S  WW+P+FG SSEPDYV          N + +LD  +A  R    C TEEKAK LR KT E+STFHD+
Subjt:  MATNLAVFHPAPIRASSSSGKSEPNRRK-AASPKWWSPIFGWSSEPDYVVSSAAEQSVQNADPELDGGRARSRFAPGCFTEEKAKLLRMKTLESSTFHDI

Query:  MYHSAIASRLASDL
        MYHSAIASRLASD+
Subjt:  MYHSAIASRLASDL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACCAATCTTGCCGTTTTCCATCCCGCTCCGATCAGAGCTTCTTCTTCTTCTGGAAAATCCGAACCTAATCGCCGGAAGGCTGCGTCGCCAAAGTGGTGGTCGCC
GATCTTCGGCTGGTCATCCGAACCGGACTACGTCGTTTCTTCCGCCGCGGAACAGTCGGTTCAGAATGCCGATCCGGAGCTCGACGGTGGAAGAGCCAGATCCAGATTCG
CGCCTGGATGCTTTACGGAGGAGAAGGCGAAACTGCTCCGAATGAAAACGCTGGAGAGCTCCACTTTCCACGACATTATGTACCATTCGGCGATCGCGTCGCGTCTCGCT
TCCGATTTGTCGGACCGAAGCAAGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGACCAATCTTGCCGTTTTCCATCCCGCTCCGATCAGAGCTTCTTCTTCTTCTGGAAAATCCGAACCTAATCGCCGGAAGGCTGCGTCGCCAAAGTGGTGGTCGCC
GATCTTCGGCTGGTCATCCGAACCGGACTACGTCGTTTCTTCCGCCGCGGAACAGTCGGTTCAGAATGCCGATCCGGAGCTCGACGGTGGAAGAGCCAGATCCAGATTCG
CGCCTGGATGCTTTACGGAGGAGAAGGCGAAACTGCTCCGAATGAAAACGCTGGAGAGCTCCACTTTCCACGACATTATGTACCATTCGGCGATCGCGTCGCGTCTCGCT
TCCGATTTGTCGGACCGAAGCAAGAAATAG
Protein sequenceShow/hide protein sequence
MATNLAVFHPAPIRASSSSGKSEPNRRKAASPKWWSPIFGWSSEPDYVVSSAAEQSVQNADPELDGGRARSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLA
SDLSDRSKK