; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G027620 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G027620
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionAcyl-[acyl-carrier-protein] hydrolase
Genome locationchr02:33886687..33889710
RNA-Seq ExpressionLsi02G027620
SyntenyLsi02G027620
Gene Ontology termsGO:0006633 - fatty acid biosynthetic process (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0016297 - acyl-[acyl-carrier-protein] hydrolase activity (molecular function)
InterPro domainsIPR002864 - Acyl-ACP thioesterase
IPR045023 - Acyl-[acyl-carrier-protein] hydrolase FATA/B


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058801.1 palmitoyl-acyl carrier protein thioesterase [Cucumis melo var. makuwa]7.5e-6074.39Show/hide
Query:  MLAISSSYSCNFGKKMNSILKKEQRFGDTSRGNLQFKGHPKICLERLKTSNIIAKSTIASEVRKIDSYESRSLDITHGNLTMGELVNDGLVYQRHFL---
        M A+SSSY CN GKK NS LKKEQRFGD++ GNLQ K HPK+ LE L+TSNIIAKS+IASEVRKI+SYESR+LDITHGNLTMGEL+NDGLVYQRHFL   
Subjt:  MLAISSSYSCNFGKKMNSILKKEQRFGDTSRGNLQFKGHPKICLERLKTSNIIAKSTIASEVRKIDSYESRSLDITHGNLTMGELVNDGLVYQRHFL---

Query:  -------------------ESKLNHLKSCGLVTTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW
                           ESKLNHLKSCGLVTTGLGTTPEMTKRGL+WVVHKLQVVVDQYPSW
Subjt:  -------------------ESKLNHLKSCGLVTTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW

KAG6593401.1 Palmitoyl-acyl carrier protein thioesterase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.2e-2646.75Show/hide
Query:  MLAISSSYSCNFGKKMNSILKKEQRFGDTSRGNLQFKGHPKICLERLKTSNIIAKSTIASEVRKIDSYESRSLDITHGNLTMGELVNDGLVYQRHFL---
        M  I SS   +FG ++ SI  +E  FG  +  +L  KG PK     LK+S+I     IA   + ID Y SR  +IT  NL + E +NDGLVYQ HFL   
Subjt:  MLAISSSYSCNFGKKMNSILKKEQRFGDTSRGNLQFKGHPKICLERLKTSNIIAKSTIASEVRKIDSYESRSLDITHGNLTMGELVNDGLVYQRHFL---

Query:  -------------------ESKLNHLKSCGLV-----TTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW
                           ESKLNH  SCGLV      TG GTT EMTKR L+WVVHKLQVVVDQ+PSW
Subjt:  -------------------ESKLNHLKSCGLV-----TTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW

KGN45333.1 hypothetical protein Csa_015751 [Cucumis sativus]1.2e-6075Show/hide
Query:  MLAISSSYSCNFGKKMNSILKKEQRFGDTSRGNLQFKGHPKICLERLKTSNIIAKSTIASEVRKIDSYESRSLDITHGNLTMGELVNDGLVYQRHFL---
        M AISSSY CNFG++ NS LKKEQRFGD++RGNLQ K HPK CLE L+TSNIIAKS+IASEVRKI+SYESR+LDITHGNLTMGEL+NDGLVYQRHFL   
Subjt:  MLAISSSYSCNFGKKMNSILKKEQRFGDTSRGNLQFKGHPKICLERLKTSNIIAKSTIASEVRKIDSYESRSLDITHGNLTMGELVNDGLVYQRHFL---

Query:  -------------------ESKLNHLKSCGLVTTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW
                           ESKLNHLKSCGLVTTGLGTTP MTKRGL+WVVHKLQVVVDQYPSW
Subjt:  -------------------ESKLNHLKSCGLVTTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW

XP_023004418.1 palmitoyl-acyl carrier protein thioesterase, chloroplastic-like [Cucurbita maxima]1.7e-2448.68Show/hide
Query:  SILKKEQRFGDTSRGNLQFKGHPKICLERLKTSNIIAKSTIASEVRKIDSYESRSLDITHGNLTMGELVNDGLVYQRHFL--------------------
        SI  +E  FG  +  +L  KG PK     LK+S+I     IAS  + +D Y SR  +IT  NL + E +NDGLVYQ HFL                    
Subjt:  SILKKEQRFGDTSRGNLQFKGHPKICLERLKTSNIIAKSTIASEVRKIDSYESRSLDITHGNLTMGELVNDGLVYQRHFL--------------------

Query:  --ESKLNHLKSCGLVTTGL-----GTTPEMTKRGLLWVVHKLQVVVDQYPSW
          ESKLNH  SCGLV TGL     GTT EMTKR L+WVVHKLQVVVDQ+PSW
Subjt:  --ESKLNHLKSCGLVTTGL-----GTTPEMTKRGLLWVVHKLQVVVDQYPSW

XP_023514527.1 palmitoyl-acyl carrier protein thioesterase, chloroplastic-like [Cucurbita pepo subsp. pepo]1.2e-2546.15Show/hide
Query:  MLAISSSYSCNFGKKMNSILKKEQRFGDTSRGNLQFKGHPKICLERLKTSNIIAKSTIASEVRKIDSYESRSLDITHGNLTMGELVNDGLVYQRHFL---
        M  I SS   +FG ++ SI  +E  FG  +  +L  K  PK     LK+S+I     IA   + ID Y SR  +IT  NL + E +NDGLVYQ HFL   
Subjt:  MLAISSSYSCNFGKKMNSILKKEQRFGDTSRGNLQFKGHPKICLERLKTSNIIAKSTIASEVRKIDSYESRSLDITHGNLTMGELVNDGLVYQRHFL---

Query:  -------------------ESKLNHLKSCGLV-----TTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW
                           ESKLNH  SCGLV      TG GTT EMTKR L+WVVHKLQVVVDQ+PSW
Subjt:  -------------------ESKLNHLKSCGLV-----TTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW

TrEMBL top hitse value%identityAlignment
A0A0A0K767 Acyl-[acyl-carrier-protein] hydrolase5.6e-6175Show/hide
Query:  MLAISSSYSCNFGKKMNSILKKEQRFGDTSRGNLQFKGHPKICLERLKTSNIIAKSTIASEVRKIDSYESRSLDITHGNLTMGELVNDGLVYQRHFL---
        M AISSSY CNFG++ NS LKKEQRFGD++RGNLQ K HPK CLE L+TSNIIAKS+IASEVRKI+SYESR+LDITHGNLTMGEL+NDGLVYQRHFL   
Subjt:  MLAISSSYSCNFGKKMNSILKKEQRFGDTSRGNLQFKGHPKICLERLKTSNIIAKSTIASEVRKIDSYESRSLDITHGNLTMGELVNDGLVYQRHFL---

Query:  -------------------ESKLNHLKSCGLVTTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW
                           ESKLNHLKSCGLVTTGLGTTP MTKRGL+WVVHKLQVVVDQYPSW
Subjt:  -------------------ESKLNHLKSCGLVTTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW

A0A5A7UZ85 Acyl-[acyl-carrier-protein] hydrolase3.6e-6074.39Show/hide
Query:  MLAISSSYSCNFGKKMNSILKKEQRFGDTSRGNLQFKGHPKICLERLKTSNIIAKSTIASEVRKIDSYESRSLDITHGNLTMGELVNDGLVYQRHFL---
        M A+SSSY CN GKK NS LKKEQRFGD++ GNLQ K HPK+ LE L+TSNIIAKS+IASEVRKI+SYESR+LDITHGNLTMGEL+NDGLVYQRHFL   
Subjt:  MLAISSSYSCNFGKKMNSILKKEQRFGDTSRGNLQFKGHPKICLERLKTSNIIAKSTIASEVRKIDSYESRSLDITHGNLTMGELVNDGLVYQRHFL---

Query:  -------------------ESKLNHLKSCGLVTTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW
                           ESKLNHLKSCGLVTTGLGTTPEMTKRGL+WVVHKLQVVVDQYPSW
Subjt:  -------------------ESKLNHLKSCGLVTTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW

A0A6J1CMR0 Acyl-[acyl-carrier-protein] hydrolase5.3e-1175.56Show/hide
Query:  ESKLNHLKSCGLVTTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW
        ES +NH KSCGLV TG  +T EM KRGL+WVVHKLQVVVD YPSW
Subjt:  ESKLNHLKSCGLVTTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW

A0A6J1H8Q2 Acyl-[acyl-carrier-protein] hydrolase4.6e-2346.71Show/hide
Query:  SILKKEQRFGDTSRGNLQFKGHPKICLERLKTSNIIAKSTIASEVRKIDSYESRSLDITHGNLTMGELVNDGLVYQRHFL--------------------
        SI  +E  FG  +  +L  KG PK     LK+S+I      A     +D Y SR  +IT  NL + E +NDGLVYQ HFL                    
Subjt:  SILKKEQRFGDTSRGNLQFKGHPKICLERLKTSNIIAKSTIASEVRKIDSYESRSLDITHGNLTMGELVNDGLVYQRHFL--------------------

Query:  --ESKLNHLKSCGLV-----TTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW
          ESKLNH  SCGLV      TG GTT EMTKR L+WVVHKLQVVVDQ+PSW
Subjt:  --ESKLNHLKSCGLV-----TTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW

A0A6J1KZF4 Acyl-[acyl-carrier-protein] hydrolase8.5e-2548.68Show/hide
Query:  SILKKEQRFGDTSRGNLQFKGHPKICLERLKTSNIIAKSTIASEVRKIDSYESRSLDITHGNLTMGELVNDGLVYQRHFL--------------------
        SI  +E  FG  +  +L  KG PK     LK+S+I     IAS  + +D Y SR  +IT  NL + E +NDGLVYQ HFL                    
Subjt:  SILKKEQRFGDTSRGNLQFKGHPKICLERLKTSNIIAKSTIASEVRKIDSYESRSLDITHGNLTMGELVNDGLVYQRHFL--------------------

Query:  --ESKLNHLKSCGLVTTGL-----GTTPEMTKRGLLWVVHKLQVVVDQYPSW
          ESKLNH  SCGLV TGL     GTT EMTKR L+WVVHKLQVVVDQ+PSW
Subjt:  --ESKLNHLKSCGLVTTGL-----GTTPEMTKRGLLWVVHKLQVVVDQYPSW

SwissProt top hitse value%identityAlignment
G3ESV0 Acyl-[acyl-carrier-protein] hydrolase FATB2, chloroplastic (Fragment)1.8e-1137.23Show/hide
Query:  RSLDITHGNLTMGELVNDGLVYQR----------------------HFLESKLNHLKSCGLVTTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW
        + LD+      +G +V DGLV+++                      H  E+ LNH+K+ GL   G G TPEM KR L+WVV K+QV+V++YP+W
Subjt:  RSLDITHGNLTMGELVNDGLVYQR----------------------HFLESKLNHLKSCGLVTTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW

G3ESV1 Acyl-[acyl-carrier-protein] hydrolase FATB3, chloroplastic7.4e-1057.45Show/hide
Query:  FLESKLNHLKSCGLVTTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW
        F E+ LNH KS GL+  G G TPEM KR L+WVV K+Q+ V++YP+W
Subjt:  FLESKLNHLKSCGLVTTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW

Q39513 Palmitoyl-acyl carrier protein thioesterase, chloroplastic1.9e-1039.76Show/hide
Query:  MGELVNDGLVYQR----------------------HFLESKLNHLKSCGLVTTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW
        +G +V DGLV+++                      H  E+ LNH+K  GL   G G TPEM KR L+WVV K+QV+V++YP+W
Subjt:  MGELVNDGLVYQR----------------------HFLESKLNHLKSCGLVTTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW

Q9SJE2 Palmitoyl-acyl carrier protein thioesterase, chloroplastic1.0e-1136.08Show/hide
Query:  YESRSLDITHGNLTMGELVNDGLVYQR----------------------HFLESKLNHLKSCGLVTTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW
        ++ R  D+      +G +V DGLV+++                      H  E+ LNH+K+ GL+  G G+TPEM K+ L+WVV ++QVVVD+YP+W
Subjt:  YESRSLDITHGNLTMGELVNDGLVYQR----------------------HFLESKLNHLKSCGLVTTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW

Q9SQI3 Palmitoyl-acyl carrier protein thioesterase, chloroplastic3.0e-1135.05Show/hide
Query:  YESRSLDITHGNLTMGELVNDGLVYQR----------------------HFLESKLNHLKSCGLVTTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW
        ++ R  D+      +G++V DGLV+ +                      H  E+ +NH +S GL+  G G TPEM K+ L+WVV ++QVVVD+YP+W
Subjt:  YESRSLDITHGNLTMGELVNDGLVYQR----------------------HFLESKLNHLKSCGLVTTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW

Arabidopsis top hitse value%identityAlignment
AT1G08510.1 fatty acyl-ACP thioesterases B7.3e-1336.08Show/hide
Query:  YESRSLDITHGNLTMGELVNDGLVYQR----------------------HFLESKLNHLKSCGLVTTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW
        ++ R  D+      +G +V DGLV+++                      H  E+ LNH+K+ GL+  G G+TPEM K+ L+WVV ++QVVVD+YP+W
Subjt:  YESRSLDITHGNLTMGELVNDGLVYQR----------------------HFLESKLNHLKSCGLVTTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW

AT3G25110.1 fatA acyl-ACP thioesterase1.1e-0523.77Show/hide
Query:  CLERLKTSNIIAKSTIASEVRKIDSYESRSLDITHGNLTMGELVNDGLVYQRHFL----------------------ESKLNHLKSCGLVTTGLGTTPEM
        C +  KT  +  ++ ++++   +     + L      L +G L  DGL Y+  F+                      E   NH +S G  T G  TT  M
Subjt:  CLERLKTSNIIAKSTIASEVRKIDSYESRSLDITHGNLTMGELVNDGLVYQRHFL----------------------ESKLNHLKSCGLVTTGLGTTPEM

Query:  TKRGLLWVVHKLQVVVDQYPSW
         K  L+WV  ++ + + +YP+W
Subjt:  TKRGLLWVVHKLQVVVDQYPSW

AT4G13050.1 Acyl-ACP thioesterase7.4e-0526.67Show/hide
Query:  SEVRKIDSYESRSLDITHGNLTMGELVNDGLVYQRHFL----------------------ESKLNHLKSCGLVTTGLGTTPEMTKRGLLWVVHKLQVVVD
        S VR  D+    S       L  G L+ DG  Y+  F+                      E   NH+++ G  T G  TT  M K  L+WV  ++ + + 
Subjt:  SEVRKIDSYESRSLDITHGNLTMGELVNDGLVYQRHFL----------------------ESKLNHLKSCGLVTTGLGTTPEMTKRGLLWVVHKLQVVVD

Query:  QYPSW
        +YP+W
Subjt:  QYPSW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAGCAATATCTTCATCTTATAGTTGTAATTTTGGTAAGAAAATGAATTCAATTTTGAAGAAAGAACAAAGATTTGGAGATACAAGTAGAGGCAATTTGCAGTTCAA
AGGCCATCCCAAAATTTGCTTAGAAAGGCTCAAAACTTCTAACATTATTGCTAAGTCCACCATTGCAAGTGAGGTTAGAAAGATTGATAGTTATGAGTCTAGAAGTCTTG
ATATAACTCATGGGAACTTAACGATGGGAGAATTAGTGAACGATGGTTTGGTTTATCAACGCCATTTCTTGGAGTCTAAACTAAACCACTTGAAAAGTTGTGGATTGGTG
ACGACAGGATTGGGCACAACACCCGAAATGACCAAAAGGGGCCTCCTATGGGTGGTTCATAAATTGCAGGTGGTGGTGGACCAATATCCTTCTTGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTAGCAATATCTTCATCTTATAGTTGTAATTTTGGTAAGAAAATGAATTCAATTTTGAAGAAAGAACAAAGATTTGGAGATACAAGTAGAGGCAATTTGCAGTTCAA
AGGCCATCCCAAAATTTGCTTAGAAAGGCTCAAAACTTCTAACATTATTGCTAAGTCCACCATTGCAAGTGAGGTTAGAAAGATTGATAGTTATGAGTCTAGAAGTCTTG
ATATAACTCATGGGAACTTAACGATGGGAGAATTAGTGAACGATGGTTTGGTTTATCAACGCCATTTCTTGGAGTCTAAACTAAACCACTTGAAAAGTTGTGGATTGGTG
ACGACAGGATTGGGCACAACACCCGAAATGACCAAAAGGGGCCTCCTATGGGTGGTTCATAAATTGCAGGTGGTGGTGGACCAATATCCTTCTTGGTAA
Protein sequenceShow/hide protein sequence
MLAISSSYSCNFGKKMNSILKKEQRFGDTSRGNLQFKGHPKICLERLKTSNIIAKSTIASEVRKIDSYESRSLDITHGNLTMGELVNDGLVYQRHFLESKLNHLKSCGLV
TTGLGTTPEMTKRGLLWVVHKLQVVVDQYPSW