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Lsi02G027670 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G027670
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionthionin-like protein 2
Genome locationchr02:33942026..33942361
RNA-Seq ExpressionLsi02G027670
SyntenyLsi02G027670
Gene Ontology termsNA
InterPro domainsIPR038975 - Thionin-like protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575558.1 hypothetical protein SDJN03_26197, partial [Cucurbita argyrosperma subsp. sororia]5.2e-2455.86Show/hide
Query:  MESSMAKKGALMGWLLLCSLSMANSYDFFDCYHSCFITCAITPGVSFFDCPSRCLHTCMSPSH--YNARLHD--QSPQQNHFFCKLGCATSLCTKFSTKE
        MES  AK G LM WL+L SL+ ANS  F +CY +CF+ CAITPGV+F DCP RCL  C+ PS   +NA   D     Q+N FFC+LGCA S CTKFST +
Subjt:  MESSMAKKGALMGWLLLCSLSMANSYDFFDCYHSCFITCAITPGVSFFDCPSRCLHTCMSPSH--YNARLHD--QSPQQNHFFCKLGCATSLCTKFSTKE

Query:  NPGSKSPLPYL
        NPG   P  Y+
Subjt:  NPGSKSPLPYL

XP_008461039.1 PREDICTED: thionin-like protein 2 [Cucumis melo]6.5e-2762.5Show/hide
Query:  MESSMAKKGALMGWLLLCSLSMANSYDFFDCYHSCFITCAITPGVSFFDCPSRCLHTCMSPS---HYNARLHDQSPQQNHFFCKLGCATSLCTKFSTKEN
        ME+ +AKK ALM WLLL SLS ANS  F +CY +CF+ CAITPGV+F DCP RCL  C+ PS     +  +H Q  QQNHFFCKLGCA S CTKFSTK+N
Subjt:  MESSMAKKGALMGWLLLCSLSMANSYDFFDCYHSCFITCAITPGVSFFDCPSRCLHTCMSPS---HYNARLHDQSPQQNHFFCKLGCATSLCTKFSTKEN

Query:  PGSK
        PG +
Subjt:  PGSK

XP_011659556.1 thionin-like protein 2 [Cucumis sativus]1.3e-2762.14Show/hide
Query:  MESSMAKKGALMGWLLLCSLSMANSYDFFDCYHSCFITCAITPGVSFFDCPSRCLHTCMSPSH--YNARLHDQSPQQNHFFCKLGCATSLCTKFSTKENP
        ME+ +AKK ALM WLLL SLS ANS  F +CY +CF+ CAITPGV+F DCP RCL  C+ PS    +A +  +  QQNHFFCKLGCA S CTKFSTK+NP
Subjt:  MESSMAKKGALMGWLLLCSLSMANSYDFFDCYHSCFITCAITPGVSFFDCPSRCLHTCMSPSH--YNARLHDQSPQQNHFFCKLGCATSLCTKFSTKENP

Query:  GSK
        G +
Subjt:  GSK

XP_022992447.1 thionin-like protein 2 [Cucurbita maxima]7.5e-2358.65Show/hide
Query:  MESSMAKKGALMGWLLLCSLSMANSYDFFDCYHSCFITCAITPGVSFFDCPSRCLHTCMSPSH--YNARLHDQSPQQ-NHFFCKLGCATSLCTKFSTKEN
        MES  AK G LM WL+L SL+ ANS  F +CY +CF+ CAITPGV+F DCP RCL  C+ PS   +NA   D   QQ N FFC+LGCA S CTKFST++N
Subjt:  MESSMAKKGALMGWLLLCSLSMANSYDFFDCYHSCFITCAITPGVSFFDCPSRCLHTCMSPSH--YNARLHDQSPQQ-NHFFCKLGCATSLCTKFSTKEN

Query:  PGSK
        P  K
Subjt:  PGSK

XP_038899383.1 thionin-like protein 2 [Benincasa hispida]8.0e-2562.63Show/hide
Query:  MAKKGALMGWLLLCSLSMANSYDFFDCYHSCFITCAITPGVSFFDCPSRCLHTCMSPSH--YNARLHDQSPQQNHFFCKLGCATSLCTKFSTKENPGSK
        MAKK AL+ WLLL SLS ANS  F +CY +CF+ CAITPGV+F DCP RCL  C+ PS    N  +H Q  +QN FFCKLGCA S CTKFSTK+NP  K
Subjt:  MAKKGALMGWLLLCSLSMANSYDFFDCYHSCFITCAITPGVSFFDCPSRCLHTCMSPSH--YNARLHDQSPQQNHFFCKLGCATSLCTKFSTKENPGSK

TrEMBL top hitse value%identityAlignment
A0A0A0K781 Uncharacterized protein6.4e-2862.14Show/hide
Query:  MESSMAKKGALMGWLLLCSLSMANSYDFFDCYHSCFITCAITPGVSFFDCPSRCLHTCMSPSH--YNARLHDQSPQQNHFFCKLGCATSLCTKFSTKENP
        ME+ +AKK ALM WLLL SLS ANS  F +CY +CF+ CAITPGV+F DCP RCL  C+ PS    +A +  +  QQNHFFCKLGCA S CTKFSTK+NP
Subjt:  MESSMAKKGALMGWLLLCSLSMANSYDFFDCYHSCFITCAITPGVSFFDCPSRCLHTCMSPSH--YNARLHDQSPQQNHFFCKLGCATSLCTKFSTKENP

Query:  GSK
        G +
Subjt:  GSK

A0A1S3CDU4 thionin-like protein 23.2e-2762.5Show/hide
Query:  MESSMAKKGALMGWLLLCSLSMANSYDFFDCYHSCFITCAITPGVSFFDCPSRCLHTCMSPS---HYNARLHDQSPQQNHFFCKLGCATSLCTKFSTKEN
        ME+ +AKK ALM WLLL SLS ANS  F +CY +CF+ CAITPGV+F DCP RCL  C+ PS     +  +H Q  QQNHFFCKLGCA S CTKFSTK+N
Subjt:  MESSMAKKGALMGWLLLCSLSMANSYDFFDCYHSCFITCAITPGVSFFDCPSRCLHTCMSPS---HYNARLHDQSPQQNHFFCKLGCATSLCTKFSTKEN

Query:  PGSK
        PG +
Subjt:  PGSK

A0A6J1CW29 thionin-like protein 25.6e-1645.05Show/hide
Query:  MESSMAKKG--ALMGWLLLCS--LSMANSYDFFDCYHSCFITCAITPGVSFFDCPSRCLHTCMSPSH------YNARLHDQSPQQNHFFCKLGCATSLCT
        ME+   K G   +M WL++ S  ++ A S  F +CY +CF+ CAITPG SF +CP +CL  C+ PS         A   D+    NHFFCKLGCA +LCT
Subjt:  MESSMAKKG--ALMGWLLLCS--LSMANSYDFFDCYHSCFITCAITPGVSFFDCPSRCLHTCMSPSH------YNARLHDQSPQQNHFFCKLGCATSLCT

Query:  KFSTKENPGSK
         F+T  NP  K
Subjt:  KFSTKENPGSK

A0A6J1GMH5 thionin-like protein 26.2e-2357.14Show/hide
Query:  MESSMAKKGALMGWLLLCSLSMANSYDFFDCYHSCFITCAITPGVSFFDCPSRCLHTCMSPSH--YNARLHD--QSPQQNHFFCKLGCATSLCTKFSTKE
        MES  AK G LM WL+L SL+ ANS  F +CY +CF+ CAITPGV+F DCP RCL  C+ PS   +NA   D     Q+N FFC+LGCA S CTKFST +
Subjt:  MESSMAKKGALMGWLLLCSLSMANSYDFFDCYHSCFITCAITPGVSFFDCPSRCLHTCMSPSH--YNARLHD--QSPQQNHFFCKLGCATSLCTKFSTKE

Query:  NPGSK
        NP  K
Subjt:  NPGSK

A0A6J1JZ84 thionin-like protein 23.6e-2358.65Show/hide
Query:  MESSMAKKGALMGWLLLCSLSMANSYDFFDCYHSCFITCAITPGVSFFDCPSRCLHTCMSPSH--YNARLHDQSPQQ-NHFFCKLGCATSLCTKFSTKEN
        MES  AK G LM WL+L SL+ ANS  F +CY +CF+ CAITPGV+F DCP RCL  C+ PS   +NA   D   QQ N FFC+LGCA S CTKFST++N
Subjt:  MESSMAKKGALMGWLLLCSLSMANSYDFFDCYHSCFITCAITPGVSFFDCPSRCLHTCMSPSH--YNARLHDQSPQQ-NHFFCKLGCATSLCTKFSTKEN

Query:  PGSK
        P  K
Subjt:  PGSK

SwissProt top hitse value%identityAlignment
A8MRP4 Thionin-like protein 29.6e-0532.56Show/hide
Query:  LCSLSMANSYDFFDCYHSCFITC-AITPGVSFFDCPSRCLHTCM---SPSHYNARLHDQSPQQNHFFCKLGCATSLCTKFSTKENP
        L + + A    F +CY +C + C A +    +  CP  C   C+   SP   ++   D+S     +FCKLGCAT  C   S+ +NP
Subjt:  LCSLSMANSYDFFDCYHSCFITC-AITPGVSFFDCPSRCLHTCM---SPSHYNARLHDQSPQQNHFFCKLGCATSLCTKFSTKENP

Arabidopsis top hitse value%identityAlignment
AT1G12660.1 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.9.8e-0530Show/hide
Query:  CYHSCFITCA-ITPGVSFFDCPSRCLHTCMSPSHYNARLHDQSPQQNHFFCKLGCATSLCTKFSTKENPG
        CY  C + CA I P +    CP  C+  C      +   +     Q   +C+LGCAT  C   S+ ++ G
Subjt:  CYHSCFITCA-ITPGVSFFDCPSRCLHTCMSPSHYNARLHDQSPQQNHFFCKLGCATSLCTKFSTKENPG

AT1G12663.1 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.6.8e-0632.56Show/hide
Query:  LCSLSMANSYDFFDCYHSCFITC-AITPGVSFFDCPSRCLHTCM---SPSHYNARLHDQSPQQNHFFCKLGCATSLCTKFSTKENP
        L + + A    F +CY +C + C A +    +  CP  C   C+   SP   ++   D+S     +FCKLGCAT  C   S+ +NP
Subjt:  LCSLSMANSYDFFDCYHSCFITC-AITPGVSFFDCPSRCLHTCM---SPSHYNARLHDQSPQQNHFFCKLGCATSLCTKFSTKENP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGCAGCATGGCAAAGAAAGGGGCTTTAATGGGTTGGCTGCTGCTCTGCTCGCTCTCCATGGCCAATTCCTACGATTTTTTCGATTGCTACCATTCCTGCTTCAT
CACATGCGCCATCACGCCCGGTGTCTCCTTCTTCGACTGCCCGTCGAGATGCCTGCATACTTGCATGTCCCCGTCTCATTACAACGCCAGGCTCCATGATCAGTCGCCAC
AACAAAATCACTTCTTCTGCAAGCTTGGCTGTGCAACTTCCTTGTGTACCAAGTTTAGCACAAAGGAAAATCCAGGTTCCAAATCTCCACTCCCTTATTTGATATATTTT
TTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAGCAGCATGGCAAAGAAAGGGGCTTTAATGGGTTGGCTGCTGCTCTGCTCGCTCTCCATGGCCAATTCCTACGATTTTTTCGATTGCTACCATTCCTGCTTCAT
CACATGCGCCATCACGCCCGGTGTCTCCTTCTTCGACTGCCCGTCGAGATGCCTGCATACTTGCATGTCCCCGTCTCATTACAACGCCAGGCTCCATGATCAGTCGCCAC
AACAAAATCACTTCTTCTGCAAGCTTGGCTGTGCAACTTCCTTGTGTACCAAGTTTAGCACAAAGGAAAATCCAGGTTCCAAATCTCCACTCCCTTATTTGATATATTTT
TTCTGA
Protein sequenceShow/hide protein sequence
MESSMAKKGALMGWLLLCSLSMANSYDFFDCYHSCFITCAITPGVSFFDCPSRCLHTCMSPSHYNARLHDQSPQQNHFFCKLGCATSLCTKFSTKENPGSKSPLPYLIYF
F