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Lsi02G027700 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G027700
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionthionin-like protein 2
Genome locationchr02:33947536..33950643
RNA-Seq ExpressionLsi02G027700
SyntenyLsi02G027700
Gene Ontology termsNA
InterPro domainsIPR038975 - Thionin-like protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008461039.1 PREDICTED: thionin-like protein 2 [Cucumis melo]5.6e-3974.17Show/hide
Query:  MESNMGKKWALMSWLLLTSLISTANSTSFQECYATCFVICALTPGVSFSDCPLRCLQACIIPSFPIDNAN-VHRQ-QQNQFFCELGCAASS---------
        ME+ + KKWALM+WLLLTSL STANSTSFQECYATCFVICA+TPGV+FSDCPLRCLQACI+PSFPID+ + VHRQ QQN FFC+LGCAASS         
Subjt:  MESNMGKKWALMSWLLLTSLISTANSTSFQECYATCFVICALTPGVSFSDCPLRCLQACIIPSFPIDNAN-VHRQ-QQNQFFCELGCAASS---------

Query:  -SEKEVGRCVDSCSQTCFMD
          E++V RCVDSCSQTC MD
Subjt:  -SEKEVGRCVDSCSQTCFMD

XP_011659556.1 thionin-like protein 2 [Cucumis sativus]5.0e-4075Show/hide
Query:  MESNMGKKWALMSWLLLTSLISTANSTSFQECYATCFVICALTPGVSFSDCPLRCLQACIIPSFPIDNAN-VHR-QQQNQFFCELGCAASS---------
        ME+ + KKWALM+WLLLTSL STANSTSFQECYATCFVICA+TPGV+FSDCPLRCLQACI+PSFPID+A+ VHR QQQN FFC+LGCAASS         
Subjt:  MESNMGKKWALMSWLLLTSLISTANSTSFQECYATCFVICALTPGVSFSDCPLRCLQACIIPSFPIDNAN-VHR-QQQNQFFCELGCAASS---------

Query:  -SEKEVGRCVDSCSQTCFMD
          E++VGRCVDSCSQTC M+
Subjt:  -SEKEVGRCVDSCSQTCFMD

XP_022953260.1 thionin-like protein 2 [Cucurbita moschata]1.5e-3673.04Show/hide
Query:  KWALMSWLLLTSLISTANSTSFQECYATCFVICALTPGVSFSDCPLRCLQACIIPSFPIDNA----NVHRQQQNQFFCELGCAASS----------SEKE
        K  LM+WL+L+SL +TANSTSFQECYATCFVICA+TPGV+FSDCPLRCLQACIIPSFPI NA    +VHRQQ+NQFFCELGCAASS          +EK+
Subjt:  KWALMSWLLLTSLISTANSTSFQECYATCFVICALTPGVSFSDCPLRCLQACIIPSFPIDNA----NVHRQQQNQFFCELGCAASS----------SEKE

Query:  VGRCVDSCSQTCFMD
        VG CVDSCS+TC MD
Subjt:  VGRCVDSCSQTCFMD

XP_022992447.1 thionin-like protein 2 [Cucurbita maxima]2.6e-3672.81Show/hide
Query:  KWALMSWLLLTSLISTANSTSFQECYATCFVICALTPGVSFSDCPLRCLQACIIPSFPIDNA---NVHRQQQNQFFCELGCAASS----------SEKEV
        K  LM+WL+L+SL +TANSTSFQECYATCF+ICA+TPGV+FSDCPLRCLQACIIPSFPI NA   +VHRQQ+NQFFCELGCAASS          +EK+V
Subjt:  KWALMSWLLLTSLISTANSTSFQECYATCFVICALTPGVSFSDCPLRCLQACIIPSFPIDNA---NVHRQQQNQFFCELGCAASS----------SEKEV

Query:  GRCVDSCSQTCFMD
        G CVDSCS+TC MD
Subjt:  GRCVDSCSQTCFMD

XP_038899383.1 thionin-like protein 2 [Benincasa hispida]5.4e-4278.07Show/hide
Query:  MGKKWALMSWLLLTSLISTANSTSFQECYATCFVICALTPGVSFSDCPLRCLQACIIPSFPIDNANVHRQQQNQFFCELGCAASS----------SEKEV
        M KKWAL++WLLL+SL STANSTSFQECYATCFVICA+TPGV+FSDCPLRCLQACIIPSFPIDN +VHRQ+QNQFFC+LGCA SS          +EKEV
Subjt:  MGKKWALMSWLLLTSLISTANSTSFQECYATCFVICALTPGVSFSDCPLRCLQACIIPSFPIDNANVHRQQQNQFFCELGCAASS----------SEKEV

Query:  GRCVDSCSQTCFMD
        G CVDSCSQTC MD
Subjt:  GRCVDSCSQTCFMD

TrEMBL top hitse value%identityAlignment
A0A0A0K781 Uncharacterized protein2.4e-4075Show/hide
Query:  MESNMGKKWALMSWLLLTSLISTANSTSFQECYATCFVICALTPGVSFSDCPLRCLQACIIPSFPIDNAN-VHR-QQQNQFFCELGCAASS---------
        ME+ + KKWALM+WLLLTSL STANSTSFQECYATCFVICA+TPGV+FSDCPLRCLQACI+PSFPID+A+ VHR QQQN FFC+LGCAASS         
Subjt:  MESNMGKKWALMSWLLLTSLISTANSTSFQECYATCFVICALTPGVSFSDCPLRCLQACIIPSFPIDNAN-VHR-QQQNQFFCELGCAASS---------

Query:  -SEKEVGRCVDSCSQTCFMD
          E++VGRCVDSCSQTC M+
Subjt:  -SEKEVGRCVDSCSQTCFMD

A0A1S3CDU4 thionin-like protein 22.7e-3974.17Show/hide
Query:  MESNMGKKWALMSWLLLTSLISTANSTSFQECYATCFVICALTPGVSFSDCPLRCLQACIIPSFPIDNAN-VHRQ-QQNQFFCELGCAASS---------
        ME+ + KKWALM+WLLLTSL STANSTSFQECYATCFVICA+TPGV+FSDCPLRCLQACI+PSFPID+ + VHRQ QQN FFC+LGCAASS         
Subjt:  MESNMGKKWALMSWLLLTSLISTANSTSFQECYATCFVICALTPGVSFSDCPLRCLQACIIPSFPIDNAN-VHRQ-QQNQFFCELGCAASS---------

Query:  -SEKEVGRCVDSCSQTCFMD
          E++V RCVDSCSQTC MD
Subjt:  -SEKEVGRCVDSCSQTCFMD

A0A6J1CW29 thionin-like protein 22.3e-3059.84Show/hide
Query:  MESNMGKKWAL---MSWL-LLTSLISTANSTSFQECYATCFVICALTPGVSFSDCPLRCLQACIIPSFPIDNA-----NVHRQQQNQFFCELGCAA----
        ME+  G KW L   M WL +++S+++TA STSFQECYATCFVICA+TPG SFS+CPL+CLQACIIPSFPID+A        R+  N FFC+LGCAA    
Subjt:  MESNMGKKWAL---MSWL-LLTSLISTANSTSFQECYATCFVICALTPGVSFSDCPLRCLQACIIPSFPIDNA-----NVHRQQQNQFFCELGCAA----

Query:  ------SSSEKEVGRCVDSCSQTCFMD
              + +EK+VGRCVDSCS+TC MD
Subjt:  ------SSSEKEVGRCVDSCSQTCFMD

A0A6J1GMH5 thionin-like protein 27.4e-3773.04Show/hide
Query:  KWALMSWLLLTSLISTANSTSFQECYATCFVICALTPGVSFSDCPLRCLQACIIPSFPIDNA----NVHRQQQNQFFCELGCAASS----------SEKE
        K  LM+WL+L+SL +TANSTSFQECYATCFVICA+TPGV+FSDCPLRCLQACIIPSFPI NA    +VHRQQ+NQFFCELGCAASS          +EK+
Subjt:  KWALMSWLLLTSLISTANSTSFQECYATCFVICALTPGVSFSDCPLRCLQACIIPSFPIDNA----NVHRQQQNQFFCELGCAASS----------SEKE

Query:  VGRCVDSCSQTCFMD
        VG CVDSCS+TC MD
Subjt:  VGRCVDSCSQTCFMD

A0A6J1JZ84 thionin-like protein 21.3e-3672.81Show/hide
Query:  KWALMSWLLLTSLISTANSTSFQECYATCFVICALTPGVSFSDCPLRCLQACIIPSFPIDNA---NVHRQQQNQFFCELGCAASS----------SEKEV
        K  LM+WL+L+SL +TANSTSFQECYATCF+ICA+TPGV+FSDCPLRCLQACIIPSFPI NA   +VHRQQ+NQFFCELGCAASS          +EK+V
Subjt:  KWALMSWLLLTSLISTANSTSFQECYATCFVICALTPGVSFSDCPLRCLQACIIPSFPIDNA---NVHRQQQNQFFCELGCAASS----------SEKEV

Query:  GRCVDSCSQTCFMD
        G CVDSCS+TC MD
Subjt:  GRCVDSCSQTCFMD

SwissProt top hitse value%identityAlignment
F4IDU9 Thionin-like protein 17.9e-0432.04Show/hide
Query:  MESNMGKKWALMSWLLLTSLISTANSTSFQECYATCFVICAL-TPGVSFSDCPLRCLQACIIPSFPIDNANVHRQQQNQFFCELGCAASSSEKEVGRCVD
        ME        +M  ++   LI      SF+ CY  C V CAL  P +    CP  C++ C         AN++   Q   +CELGCA         RCV 
Subjt:  MESNMGKKWALMSWLLLTSLISTANSTSFQECYATCFVICAL-TPGVSFSDCPLRCLQACIIPSFPIDNANVHRQQQNQFFCELGCAASSSEKEVGRCVD

Query:  SCS
        S S
Subjt:  SCS

Arabidopsis top hitse value%identityAlignment
AT1G12660.1 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.5.6e-0532.04Show/hide
Query:  MESNMGKKWALMSWLLLTSLISTANSTSFQECYATCFVICAL-TPGVSFSDCPLRCLQACIIPSFPIDNANVHRQQQNQFFCELGCAASSSEKEVGRCVD
        ME        +M  ++   LI      SF+ CY  C V CAL  P +    CP  C++ C         AN++   Q   +CELGCA         RCV 
Subjt:  MESNMGKKWALMSWLLLTSLISTANSTSFQECYATCFVICAL-TPGVSFSDCPLRCLQACIIPSFPIDNANVHRQQQNQFFCELGCAASSSEKEVGRCVD

Query:  SCS
        S S
Subjt:  SCS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGCGGGATGGCAATGAAATGGGCTTTAATGGCTTGTCTGGTGCTTAGCTCGCTCTCCATGGCGAATTCTGAAACTTATCAAGATTGCTACAGCTCCTGCTTCGT
CGTATGCGCCGTCACGCCCGGCATCGCCTTCTCCGACTGCCCGTCGAGATTATTGCTGGGATCACATGTGAAGTTTTCTTTTGTTTTGTTGATGCTGAAAGAGAAGTGGG
GAACTTCGTCAATGGAGAGCAACATGGGAAAGAAATGGGCATTAATGTCTTGGCTGCTGCTGACCTCGCTGATCTCCACGGCCAATTCCACCTCCTTTCAAGAATGCTAC
GCCACCTGCTTCGTCATATGCGCCCTCACGCCCGGTGTCTCCTTCTCCGACTGCCCCTTGAGATGCCTGCAAGCTTGCATCATCCCGTCTTTTCCTATCGATAACGCCAA
CGTTCATCGGCAACAACAAAATCAATTCTTCTGTGAGCTCGGCTGCGCAGCTTCCTCATCTGAAAAAGAAGTGGGGAGATGTGTGGATTCTTGCTCTCAAACATGTTTCA
TGGATTGA
mRNA sequenceShow/hide mRNA sequence
TGTCCACCGTAGAAGAGGAAGGGAGATCAAAACAAAGGCTTAATTTTCATCATCATAAAATGGAGAGCGGGATGGCAATGAAATGGGCTTTAATGGCTTGTCTGGTGCTT
AGCTCGCTCTCCATGGCGAATTCTGAAACTTATCAAGATTGCTACAGCTCCTGCTTCGTCGTATGCGCCGTCACGCCCGGCATCGCCTTCTCCGACTGCCCGTCGAGATT
ATTGCTGGGATCACATGTGAAGTTTTCTTTTGTTTTGTTGATGCTGAAAGAGAAGTGGGGAACTTCGTCAATGGAGAGCAACATGGGAAAGAAATGGGCATTAATGTCTT
GGCTGCTGCTGACCTCGCTGATCTCCACGGCCAATTCCACCTCCTTTCAAGAATGCTACGCCACCTGCTTCGTCATATGCGCCCTCACGCCCGGTGTCTCCTTCTCCGAC
TGCCCCTTGAGATGCCTGCAAGCTTGCATCATCCCGTCTTTTCCTATCGATAACGCCAACGTTCATCGGCAACAACAAAATCAATTCTTCTGTGAGCTCGGCTGCGCAGC
TTCCTCATCTGAAAAAGAAGTGGGGAGATGTGTGGATTCTTGCTCTCAAACATGTTTCATGGATTGATCTGCATCTGCTAAATGAAGCCAATAAACTACTTTTTTTCTTT
CTTTTTTTTTTTCCCCCCTTTTTGTTGAAAAAATAAGTACATAGTATAAGTAATATATTGAGTTTTATTTAGAAATGAAACTACATTATTATTGCTGGAATTCCATTCAA
TACTAAAGAAATATTTTGGGTTTAAGTGCTAAGGC
Protein sequenceShow/hide protein sequence
MESGMAMKWALMACLVLSSLSMANSETYQDCYSSCFVVCAVTPGIAFSDCPSRLLLGSHVKFSFVLLMLKEKWGTSSMESNMGKKWALMSWLLLTSLISTANSTSFQECY
ATCFVICALTPGVSFSDCPLRCLQACIIPSFPIDNANVHRQQQNQFFCELGCAASSSEKEVGRCVDSCSQTCFMD