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Lsi02G027920 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G027920
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPyridoxal 5'-phosphate synthase subunit PdxS
Genome locationchr02:34151690..34153193
RNA-Seq ExpressionLsi02G027920
SyntenyLsi02G027920
Gene Ontology termsGO:0006520 - cellular amino acid metabolic process (biological process)
GO:0008615 - pyridoxine biosynthetic process (biological process)
GO:0042823 - pyridoxal phosphate biosynthetic process (biological process)
GO:0016843 - amine-lyase activity (molecular function)
InterPro domainsIPR001852 - Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ
IPR013785 - Aldolase-type TIM barrel
IPR033755 - PdxS/SNZ N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059296.1 pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Cucumis melo var. makuwa]1.7e-4570.21Show/hide
Query:  SLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQLG
        SLGEALRRIKEGAA+VKT G+M SSSGNI+E LRNVR+VM+EIRYLHNM++DEVFA+SQKI APYD+                AGGI TPADAALMMQLG
Subjt:  SLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQLG

Query:  CDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASF
        CDGIFL LEIF+CPNPRDRLR M+ AVRN+ +P  L +ASF
Subjt:  CDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASF

XP_008462450.1 PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Cucumis melo]1.3e-4570.21Show/hide
Query:  SLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQLG
        SLGEALRRIKEGAA+VKT G+M SSSGNI+E LRNVR+VM+EIRYLHNM++DEVFA+SQKI APYD+                AGGI TPADAALMMQLG
Subjt:  SLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQLG

Query:  CDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASF
        CDGIFL LEIF+CPNPRDRLR M+ AVRN+ +P  L +ASF
Subjt:  CDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASF

XP_022145699.1 pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Momordica charantia]6.8e-4768.03Show/hide
Query:  SLGEALRRIKEGAAMVKTRGDMTSSS-GNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQL
        SLGEALRR+KEGA MVKT+G + +S+ G+I E  RNVRSVM EIR LHNM+DDEVFAF++KIAAPYD+                AGGI+TPADA LMMQL
Subjt:  SLGEALRRIKEGAAMVKTRGDMTSSS-GNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQL

Query:  GCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA
        GCDGIF+ LEIFDC NPRDRLR M++AV+NYNDP++LA+ASFGFGAA
Subjt:  GCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA

XP_038897062.1 pyridoxal 5'-phosphate synthase-like subunit PDX1.2 isoform X1 [Benincasa hispida]3.1e-5277.4Show/hide
Query:  SLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQLG
        +LGEALRRIKEGAAMVKT+GDM+SSSGNIAE LRNVRSVM EIRYLHNMNDDEVFAFS+KIAAPYD+                AGGI TPADAALMMQLG
Subjt:  SLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQLG

Query:  CDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA
        CDGIFL  EIFD PN RDRLRGMI AVRNYN+P VLA+ SFGFGAA
Subjt:  CDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA

XP_038897063.1 pyridoxal 5'-phosphate synthase-like subunit PDX1.2 isoform X2 [Benincasa hispida]3.6e-4876.81Show/hide
Query:  SLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQLG
        +LGEALRRIKEGAAMVKT+GDM+SSSGNIAE LRNVRSVM EIRYLHNMNDDEVFAFS+KIAAPYD+                AGGI TPADAALMMQLG
Subjt:  SLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQLG

Query:  CDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQ
        CDGIFL  EIFD PN RDRLRGMI AVRNYN+P VLA+
Subjt:  CDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQ

TrEMBL top hitse value%identityAlignment
A0A0A0K936 SOR_SNZ domain-containing protein1.8e-4567.81Show/hide
Query:  SLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQLG
        SLGEALRRIKEGA MVKT+G M+S +G+I E LRNVRSVM++IRYLHNM+++EVFA+S++IAAPYD+                AGGI TPADAALMMQLG
Subjt:  SLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQLG

Query:  CDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA
        CDGIFL LEIF+ PNPRDRLR MI AVRN++DP  LA+A+FGFG A
Subjt:  CDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA

A0A1S3CH05 pyridoxal 5'-phosphate synthase-like subunit PDX1.26.2e-4670.21Show/hide
Query:  SLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQLG
        SLGEALRRIKEGAA+VKT G+M SSSGNI+E LRNVR+VM+EIRYLHNM++DEVFA+SQKI APYD+                AGGI TPADAALMMQLG
Subjt:  SLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQLG

Query:  CDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASF
        CDGIFL LEIF+CPNPRDRLR M+ AVRN+ +P  L +ASF
Subjt:  CDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASF

A0A5D3BYT2 Pyridoxal 5'-phosphate synthase-like subunit PDX1.28.1e-4670.21Show/hide
Query:  SLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQLG
        SLGEALRRIKEGAA+VKT G+M SSSGNI+E LRNVR+VM+EIRYLHNM++DEVFA+SQKI APYD+                AGGI TPADAALMMQLG
Subjt:  SLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQLG

Query:  CDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASF
        CDGIFL LEIF+CPNPRDRLR M+ AVRN+ +P  L +ASF
Subjt:  CDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASF

A0A6J1CW07 pyridoxal 5'-phosphate synthase-like subunit PDX1.23.3e-4768.03Show/hide
Query:  SLGEALRRIKEGAAMVKTRGDMTSSS-GNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQL
        SLGEALRR+KEGA MVKT+G + +S+ G+I E  RNVRSVM EIR LHNM+DDEVFAF++KIAAPYD+                AGGI+TPADA LMMQL
Subjt:  SLGEALRRIKEGAAMVKTRGDMTSSS-GNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQL

Query:  GCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA
        GCDGIF+ LEIFDC NPRDRLR M++AV+NYNDP++LA+ASFGFGAA
Subjt:  GCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA

A0A6J1KI63 pyridoxal 5'-phosphate synthase-like subunit PDX1.28.9e-4568.71Show/hide
Query:  SLGEALRRIKEGAAMVKTRGDMT--SSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQ
        SLGEALRR+KEGA M+KT+GDM   SS  NI E LRNVRSVMA+IR+LH+MN+DEVFAFSQKI+APYDI                AGGIATPADAALMMQ
Subjt:  SLGEALRRIKEGAAMVKTRGDMT--SSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQ

Query:  LGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGA
        LGCDGIF+ LEIF    P DRLRG++ AV+ YNDP VLAQASFG GA
Subjt:  LGCDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGA

SwissProt top hitse value%identityAlignment
Q39963 Probable pyridoxal 5'-phosphate synthase subunit PDX14.3e-3653.42Show/hide
Query:  SLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQLG
        +LGEALRRI+EGAAM++T+G+  + +GN+ EA+R+VRSVM +IR L NM+DDEVF F++KIAAPYD+                AGG+ATPADAALMMQLG
Subjt:  SLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQLG

Query:  CDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA
        CDG+F+   +F   +P  R R ++ AV +Y+DP +LA+ S G G A
Subjt:  CDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA

Q69LA6 Probable pyridoxal 5'-phosphate synthase subunit PDX1.19.5e-3653.1Show/hide
Query:  LGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQLGC
        LGEALRRI+EGAAM++T+G+  + +GN+ EA+R+VRSVM +IR L NM+DDEVF+++++IAAPYD+                AGG+ATPADAALMMQLGC
Subjt:  LGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQLGC

Query:  DGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA
        DG+F+   IF   +P  R R ++ AV +Y+DP +LA+ S G G A
Subjt:  DGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA

Q9AT63 Probable pyridoxal 5'-phosphate synthase subunit PDX14.7e-3551.37Show/hide
Query:  SLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQLG
        +LGEALRRI EGAAM++T+G+  + +GN+ EA+R+VRSV+ +IR L +++DDEVFAF+++IAAPY++                AGG+ATPADAALMMQLG
Subjt:  SLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQLG

Query:  CDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA
        CDG+F+   +F   +P  R R ++ AV +YNDPH+LA+ S   G A
Subjt:  CDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA

Q9FT25 Pyridoxal 5'-phosphate synthase subunit PDX13.3e-3653.42Show/hide
Query:  SLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQLG
        +LGEALRRI+EGAAM++T+G+  + +GNI EA+R+VRSVM++IR L NM+DDEVF F++ IAAPYD+                AGG+ATPADAALMMQLG
Subjt:  SLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQLG

Query:  CDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA
        CDG+F+   +F   +P  R R ++ AV +Y+DP +LA+ S G G A
Subjt:  CDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA

Q9ZNR6 Pyridoxal 5'-phosphate synthase-like subunit PDX1.21.4e-3957.86Show/hide
Query:  GEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDITA---------------GGIATPADAALMMQLGCD
        GEALRRI+EGAAM++ +GD+T ++GNIAE ++NVRS+M E+R L+NM+DDEVF F++KI+APYD+ A               GGI TPADAALMMQLGCD
Subjt:  GEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDITA---------------GGIATPADAALMMQLGCD

Query:  GIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFG
        G+F+  E+FD P+P  +LR ++ AV++YNDPHVLA+ S G
Subjt:  GIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFG

Arabidopsis top hitse value%identityAlignment
AT2G38230.1 pyridoxine biosynthesis 1.11.4e-3451.37Show/hide
Query:  SLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQLG
        +LGEALRRI+EGAAM++T+G+  + +GN+ EA+R+VRSV   IR L +M+DDEVF +++KIAAPYD+                AGG+ATPADAALMMQLG
Subjt:  SLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQLG

Query:  CDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA
        CDG+F+   +F   +P  R + ++ AV NY D  VLA+ S G G A
Subjt:  CDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA

AT3G16050.1 pyridoxine biosynthesis 1.21.0e-4057.86Show/hide
Query:  GEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDITA---------------GGIATPADAALMMQLGCD
        GEALRRI+EGAAM++ +GD+T ++GNIAE ++NVRS+M E+R L+NM+DDEVF F++KI+APYD+ A               GGI TPADAALMMQLGCD
Subjt:  GEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDITA---------------GGIATPADAALMMQLGCD

Query:  GIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFG
        G+F+  E+FD P+P  +LR ++ AV++YNDPHVLA+ S G
Subjt:  GIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFG

AT5G01410.1 Aldolase-type TIM barrel family protein4.4e-3652.74Show/hide
Query:  SLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQLG
        +LGEALRRI+EGAAM++T+G+  + +GNI EA+R+VRSV  +IR L NM+DDEVF F++K+AAPYD+                AGG+ATPADAALMMQLG
Subjt:  SLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDI---------------TAGGIATPADAALMMQLG

Query:  CDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA
        CDG+F+   IF   +P  R R ++ AV +Y+DP +L + S G G A
Subjt:  CDGIFLELEIFDCPNPRDRLRGMIIAVRNYNDPHVLAQASFGFGAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCTAGGCGAGGCGTTGAGGAGAATAAAGGAAGGTGCGGCAATGGTGAAGACTCGAGGGGATATGACGTCTTCTTCAGGTAACATTGCGGAGGCGTTGCGTAACGT
GAGGTCTGTGATGGCAGAGATTAGATATTTACATAACATGAATGACGATGAGGTTTTCGCTTTCTCGCAAAAGATCGCTGCGCCTTATGATATTACTGCCGGAGGCATTG
CGACTCCTGCGGATGCGGCTTTGATGATGCAGTTAGGTTGTGATGGCATCTTTCTGGAATTGGAGATATTCGACTGCCCTAATCCTCGCGACCGATTAAGGGGAATGATT
ATAGCGGTGAGGAATTACAACGATCCCCACGTTCTGGCGCAGGCTAGTTTTGGATTTGGCGCCGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCCTAGGCGAGGCGTTGAGGAGAATAAAGGAAGGTGCGGCAATGGTGAAGACTCGAGGGGATATGACGTCTTCTTCAGGTAACATTGCGGAGGCGTTGCGTAACGT
GAGGTCTGTGATGGCAGAGATTAGATATTTACATAACATGAATGACGATGAGGTTTTCGCTTTCTCGCAAAAGATCGCTGCGCCTTATGATATTACTGCCGGAGGCATTG
CGACTCCTGCGGATGCGGCTTTGATGATGCAGTTAGGTTGTGATGGCATCTTTCTGGAATTGGAGATATTCGACTGCCCTAATCCTCGCGACCGATTAAGGGGAATGATT
ATAGCGGTGAGGAATTACAACGATCCCCACGTTCTGGCGCAGGCTAGTTTTGGATTTGGCGCCGCATGA
Protein sequenceShow/hide protein sequence
MSLGEALRRIKEGAAMVKTRGDMTSSSGNIAEALRNVRSVMAEIRYLHNMNDDEVFAFSQKIAAPYDITAGGIATPADAALMMQLGCDGIFLELEIFDCPNPRDRLRGMI
IAVRNYNDPHVLAQASFGFGAA