; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G028260 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G028260
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionpre-mRNA-processing protein 40C
Genome locationchr02:34467074..34475572
RNA-Seq ExpressionLsi02G028260
SyntenyLsi02G028260
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
GO:0070063 - RNA polymerase binding (molecular function)
InterPro domainsIPR002713 - FF domain
IPR036517 - FF domain superfamily
IPR045148 - Transcription elongation regulator 1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008462197.1 PREDICTED: pre-mRNA-processing protein 40C [Cucumis melo]1.4e-13493.97Show/hide
Query:  RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRWFRVKDSLRDDPRYRSVKHEEREMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW
        RVLCLKKAAVEKAQALWAASTTSFKSMLQER DINVNSRWFRVKDSLR+DPRYRSVKHEEREMLFNEYISELKA EEEKQRESKARKEEQEKLKEREREW
Subjt:  RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRWFRVKDSLRDDPRYRSVKHEEREMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW

Query:  RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVT
        RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKD QASWTESKVKLEKDPQGRASNPDLDSS+TEKLFREHVKMLQERCANEFR LLSEAFTAEVV 
Subjt:  RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVT

Query:  QVSEDGKTVLNSWTMAKRILKPDLRYSKVPRKEREALWRRYADDTLRKQKLANDPKGEKHNDFKSRATIDAGKFPSKPRIHE
        QVSEDGKTVL+SWTMAKRILKPD RY KVPRKEREALWRRYADDT+RKQKLAND KGEK+ND+K+RAT DAGKFPSKPRIH+
Subjt:  QVSEDGKTVLNSWTMAKRILKPDLRYSKVPRKEREALWRRYADDTLRKQKLANDPKGEKHNDFKSRATIDAGKFPSKPRIHE

XP_011659583.1 pre-mRNA-processing protein 40C [Cucumis sativus]1.2e-13393.26Show/hide
Query:  RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRWFRVKDSLRDDPRYRSVKHEEREMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW
        RVLCLKKAAVEKAQALWAASTTSFKSMLQER DIN+NSRWFRVKDSLR+DPRYRSVKHEEREMLFNEYISELKA EEEKQRESKARKEEQEKLKEREREW
Subjt:  RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRWFRVKDSLRDDPRYRSVKHEEREMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW

Query:  RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVT
        RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKD QASWTESKVKLEKDPQGRASN DLDSS+TEKLFREHVKMLQERCANEFR LLSE+FTAEVV 
Subjt:  RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVT

Query:  QVSEDGKTVLNSWTMAKRILKPDLRYSKVPRKEREALWRRYADDTLRKQKLANDPKGEKHNDFKSRATIDAGKFPSKPRIHE
        QVSEDGKTVLNSWTMAKRILKPD RY KVPRKEREALWRRYADDT+RKQKLAND KGEK+ND+K+RAT DAGKFPSKPRIH+
Subjt:  QVSEDGKTVLNSWTMAKRILKPDLRYSKVPRKEREALWRRYADDTLRKQKLANDPKGEKHNDFKSRATIDAGKFPSKPRIHE

XP_022953473.1 pre-mRNA-processing protein 40C [Cucurbita moschata]3.9e-13293.62Show/hide
Query:  RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRWFRVKDSLRDDPRYRSVKHEEREMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW
        RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRW RVKDSLRDDPRYRSVKHE+REMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW
Subjt:  RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRWFRVKDSLRDDPRYRSVKHEEREMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW

Query:  RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVT
        RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKD QASW+ESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVV+
Subjt:  RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVT

Query:  QVSEDGKTVLNSWTMAKRILKPDLRYSKVPRKEREALWRRYADDTLRKQKLANDPKGEKHNDFKSRATIDAGKFPSKPRIHE
        QVSEDGKTVLNSWTMAKR LKPD RYSK+PRKEREALWRRYADDTLRKQK AND K EKH++ KSR+T  AGK PSKPRIHE
Subjt:  QVSEDGKTVLNSWTMAKRILKPDLRYSKVPRKEREALWRRYADDTLRKQKLANDPKGEKHNDFKSRATIDAGKFPSKPRIHE

XP_023547625.1 pre-mRNA-processing protein 40C [Cucurbita pepo subsp. pepo]1.1e-13193.26Show/hide
Query:  RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRWFRVKDSLRDDPRYRSVKHEEREMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW
        RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRW RVKDSLRDDPRYRSVKHE+REMLFNEYISELKAVEEEKQRESKA+KEEQEKLKEREREW
Subjt:  RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRWFRVKDSLRDDPRYRSVKHEEREMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW

Query:  RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVT
        RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKD QASW+ESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVV+
Subjt:  RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVT

Query:  QVSEDGKTVLNSWTMAKRILKPDLRYSKVPRKEREALWRRYADDTLRKQKLANDPKGEKHNDFKSRATIDAGKFPSKPRIHE
        QVSEDGKTVLNSWTMAKR LKPD RYSK+PRKEREALWRRYADDTLRKQK AND K EKH++ KSR+T  AGK PSKPRIHE
Subjt:  QVSEDGKTVLNSWTMAKRILKPDLRYSKVPRKEREALWRRYADDTLRKQKLANDPKGEKHNDFKSRATIDAGKFPSKPRIHE

XP_038900162.1 pre-mRNA-processing protein 40C [Benincasa hispida]2.5e-13997.52Show/hide
Query:  RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRWFRVKDSLRDDPRYRSVKHEEREMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW
        RVL LKKAA+EKAQALWAASTTSFKSMLQERGDINVNSRWFRVKDSLRDDPRYRSVKHEEREMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW
Subjt:  RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRWFRVKDSLRDDPRYRSVKHEEREMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW

Query:  RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVT
        RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKD QASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVV 
Subjt:  RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVT

Query:  QVSEDGKTVLNSWTMAKRILKPDLRYSKVPRKEREALWRRYADDTLRKQKLANDPKGEKHNDFKSRATIDAGKFPSKPRIHE
        Q+SEDGKTVLNSWTMAKRILKPD RYSKVPRKEREALWRRYADDTLRKQKLAND KGEKHNDFKSRATIDAGKFPSKPRIHE
Subjt:  QVSEDGKTVLNSWTMAKRILKPDLRYSKVPRKEREALWRRYADDTLRKQKLANDPKGEKHNDFKSRATIDAGKFPSKPRIHE

TrEMBL top hitse value%identityAlignment
A0A0A0K978 Uncharacterized protein5.8e-13493.26Show/hide
Query:  RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRWFRVKDSLRDDPRYRSVKHEEREMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW
        RVLCLKKAAVEKAQALWAASTTSFKSMLQER DIN+NSRWFRVKDSLR+DPRYRSVKHEEREMLFNEYISELKA EEEKQRESKARKEEQEKLKEREREW
Subjt:  RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRWFRVKDSLRDDPRYRSVKHEEREMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW

Query:  RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVT
        RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKD QASWTESKVKLEKDPQGRASN DLDSS+TEKLFREHVKMLQERCANEFR LLSE+FTAEVV 
Subjt:  RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVT

Query:  QVSEDGKTVLNSWTMAKRILKPDLRYSKVPRKEREALWRRYADDTLRKQKLANDPKGEKHNDFKSRATIDAGKFPSKPRIHE
        QVSEDGKTVLNSWTMAKRILKPD RY KVPRKEREALWRRYADDT+RKQKLAND KGEK+ND+K+RAT DAGKFPSKPRIH+
Subjt:  QVSEDGKTVLNSWTMAKRILKPDLRYSKVPRKEREALWRRYADDTLRKQKLANDPKGEKHNDFKSRATIDAGKFPSKPRIHE

A0A1S3CHX0 pre-mRNA-processing protein 40C6.9e-13593.97Show/hide
Query:  RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRWFRVKDSLRDDPRYRSVKHEEREMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW
        RVLCLKKAAVEKAQALWAASTTSFKSMLQER DINVNSRWFRVKDSLR+DPRYRSVKHEEREMLFNEYISELKA EEEKQRESKARKEEQEKLKEREREW
Subjt:  RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRWFRVKDSLRDDPRYRSVKHEEREMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW

Query:  RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVT
        RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKD QASWTESKVKLEKDPQGRASNPDLDSS+TEKLFREHVKMLQERCANEFR LLSEAFTAEVV 
Subjt:  RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVT

Query:  QVSEDGKTVLNSWTMAKRILKPDLRYSKVPRKEREALWRRYADDTLRKQKLANDPKGEKHNDFKSRATIDAGKFPSKPRIHE
        QVSEDGKTVL+SWTMAKRILKPD RY KVPRKEREALWRRYADDT+RKQKLAND KGEK+ND+K+RAT DAGKFPSKPRIH+
Subjt:  QVSEDGKTVLNSWTMAKRILKPDLRYSKVPRKEREALWRRYADDTLRKQKLANDPKGEKHNDFKSRATIDAGKFPSKPRIHE

A0A5A7V0S2 Pre-mRNA-processing protein 40C6.9e-13593.97Show/hide
Query:  RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRWFRVKDSLRDDPRYRSVKHEEREMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW
        RVLCLKKAAVEKAQALWAASTTSFKSMLQER DINVNSRWFRVKDSLR+DPRYRSVKHEEREMLFNEYISELKA EEEKQRESKARKEEQEKLKEREREW
Subjt:  RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRWFRVKDSLRDDPRYRSVKHEEREMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW

Query:  RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVT
        RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKD QASWTESKVKLEKDPQGRASNPDLDSS+TEKLFREHVKMLQERCANEFR LLSEAFTAEVV 
Subjt:  RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVT

Query:  QVSEDGKTVLNSWTMAKRILKPDLRYSKVPRKEREALWRRYADDTLRKQKLANDPKGEKHNDFKSRATIDAGKFPSKPRIHE
        QVSEDGKTVL+SWTMAKRILKPD RY KVPRKEREALWRRYADDT+RKQKLAND KGEK+ND+K+RAT DAGKFPSKPRIH+
Subjt:  QVSEDGKTVLNSWTMAKRILKPDLRYSKVPRKEREALWRRYADDTLRKQKLANDPKGEKHNDFKSRATIDAGKFPSKPRIHE

A0A6J1GNF1 pre-mRNA-processing protein 40C1.9e-13293.62Show/hide
Query:  RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRWFRVKDSLRDDPRYRSVKHEEREMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW
        RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRW RVKDSLRDDPRYRSVKHE+REMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW
Subjt:  RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRWFRVKDSLRDDPRYRSVKHEEREMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW

Query:  RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVT
        RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKD QASW+ESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVV+
Subjt:  RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVT

Query:  QVSEDGKTVLNSWTMAKRILKPDLRYSKVPRKEREALWRRYADDTLRKQKLANDPKGEKHNDFKSRATIDAGKFPSKPRIHE
        QVSEDGKTVLNSWTMAKR LKPD RYSK+PRKEREALWRRYADDTLRKQK AND K EKH++ KSR+T  AGK PSKPRIHE
Subjt:  QVSEDGKTVLNSWTMAKRILKPDLRYSKVPRKEREALWRRYADDTLRKQKLANDPKGEKHNDFKSRATIDAGKFPSKPRIHE

A0A6J1JUS6 pre-mRNA-processing protein 40C1.6e-13192.91Show/hide
Query:  RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRWFRVKDSLRDDPRYRSVKHEEREMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW
        RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRW RVKDSLRDDPRYRSVKHE+REMLFNEYISELKAVEEEKQRESKA+KEEQEKLKEREREW
Subjt:  RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRWFRVKDSLRDDPRYRSVKHEEREMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW

Query:  RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVT
        RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKD QASW+ESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVV+
Subjt:  RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVT

Query:  QVSEDGKTVLNSWTMAKRILKPDLRYSKVPRKEREALWRRYADDTLRKQKLANDPKGEKHNDFKSRATIDAGKFPSKPRIHE
        Q SEDGKTVLNSWTMAKR LKPD RYSK+PRKEREALWRRYADDTLRKQK AND K EKH++ KSR+T  AGK PSKPRIHE
Subjt:  QVSEDGKTVLNSWTMAKRILKPDLRYSKVPRKEREALWRRYADDTLRKQKLANDPKGEKHNDFKSRATIDAGKFPSKPRIHE

SwissProt top hitse value%identityAlignment
O14776 Transcription elongation regulator 11.4e-1532.35Show/hide
Query:  INVNSRWFRVKDSLRDDPRYRSVKHEE-REMLFNEYISEL-KAVEEEKQRESKARKEEQEKLKEREREWRKRKEREEQEMERVRLKVRKKEAVASFQALL
        ++  SRW +VKD +  DPRY++V     RE LF +YI ++ K ++ EK++E + +   +  L+ERERE +K +  + +E++R R + +++EA+ +F+ALL
Subjt:  INVNSRWFRVKDSLRDDPRYRSVKHEE-REMLFNEYISEL-KAVEEEKQRESKARKEEQEKLKEREREWRKRKEREEQEMERVRLKVRKKEAVASFQALL

Query:  VESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVTQVSEDGKTVLNSWTMAKRILKPDLRYSKVPR
         + ++ S  SW++++  L KD +   S   L+  + EKLF EH++ L ++    FR LL E               T+ ++W   K+I+K D R  K   
Subjt:  VESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVTQVSEDGKTVLNSWTMAKRILKPDLRYSKVPR

Query:  KERE
         +R+
Subjt:  KERE

Q8CGF7 Transcription elongation regulator 11.4e-1532.35Show/hide
Query:  INVNSRWFRVKDSLRDDPRYRSVKHEE-REMLFNEYISEL-KAVEEEKQRESKARKEEQEKLKEREREWRKRKEREEQEMERVRLKVRKKEAVASFQALL
        ++  SRW +VKD +  DPRY++V     RE LF +YI ++ K ++ EK++E + +   +  L+ERERE +K +  + +E++R R + +++EA+ +F+ALL
Subjt:  INVNSRWFRVKDSLRDDPRYRSVKHEE-REMLFNEYISEL-KAVEEEKQRESKARKEEQEKLKEREREWRKRKEREEQEMERVRLKVRKKEAVASFQALL

Query:  VESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVTQVSEDGKTVLNSWTMAKRILKPDLRYSKVPR
         + ++ S  SW++++  L KD +   S   L+  + EKLF EH++ L ++    FR LL E               T+ ++W   K+I+K D R  K   
Subjt:  VESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVTQVSEDGKTVLNSWTMAKRILKPDLRYSKVPR

Query:  KERE
         +R+
Subjt:  KERE

Q9LT25 Pre-mRNA-processing protein 40C7.7e-7559.62Show/hide
Query:  RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRWFRVKDSLRDDPRYRSVKHEEREMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW
        RVL LK++A +KAQ + AA+ + FK+ML+ER +I++NS W +VKDSLR++PRYRSV HE+RE+ + EYI+ELKA +     E KAR +E++KL+ERERE 
Subjt:  RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRWFRVKDSLRDDPRYRSVKHEEREMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW

Query:  RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVT
        RKRKERE QE+ERVR K+R+KEA +S+QALLVE I+D +ASWTESK  LE+DPQ RASNPDL+ +D EKLFR+HVK L ERC ++F+ LL+EA ++E  T
Subjt:  RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVT

Query:  QVSEDGKTVLNSWTMAKRILKPDLRYSKVPRKEREALWRRYADDTLRKQKLANDPKGEKHNDFKS
          +EDGKT LNSW+ AK++LKPD+RYSK+PR++RE +WRRY +D  RKQ+  N  + EK  D+K+
Subjt:  QVSEDGKTVLNSWTMAKRILKPDLRYSKVPRKEREALWRRYADDTLRKQKLANDPKGEKHNDFKS

Arabidopsis top hitse value%identityAlignment
AT3G19840.1 pre-mRNA-processing protein 40C5.5e-7659.62Show/hide
Query:  RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRWFRVKDSLRDDPRYRSVKHEEREMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW
        RVL LK++A +KAQ + AA+ + FK+ML+ER +I++NS W +VKDSLR++PRYRSV HE+RE+ + EYI+ELKA +     E KAR +E++KL+ERERE 
Subjt:  RVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRWFRVKDSLRDDPRYRSVKHEEREMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREW

Query:  RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVT
        RKRKERE QE+ERVR K+R+KEA +S+QALLVE I+D +ASWTESK  LE+DPQ RASNPDL+ +D EKLFR+HVK L ERC ++F+ LL+EA ++E  T
Subjt:  RKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVT

Query:  QVSEDGKTVLNSWTMAKRILKPDLRYSKVPRKEREALWRRYADDTLRKQKLANDPKGEKHNDFKS
          +EDGKT LNSW+ AK++LKPD+RYSK+PR++RE +WRRY +D  RKQ+  N  + EK  D+K+
Subjt:  QVSEDGKTVLNSWTMAKRILKPDLRYSKVPRKEREALWRRYADDTLRKQKLANDPKGEKHNDFKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAAGTAGGGTCCTTTGTCTGAAGAAGGCTGCCGTTGAAAAAGCTCAAGCTTTATGGGCTGCTTCCACCACTAGTTTTAAGTCCATGCTGCAGGAGAGAGGAGATAT
CAACGTCAATTCCCGTTGGTTCAGGGTAAAAGATAGTCTACGGGACGATCCAAGATACAGATCTGTTAAGCATGAGGAGCGTGAGATGTTATTCAATGAGTACATATCTG
AACTTAAGGCTGTTGAGGAGGAAAAGCAGCGTGAATCAAAAGCTAGAAAGGAGGAGCAGGAGAAACTGAAGGAAAGGGAGAGAGAATGGCGGAAAAGGAAGGAAAGAGAA
GAGCAAGAAATGGAAAGGGTGCGCCTAAAAGTACGGAAAAAAGAGGCAGTTGCATCTTTTCAAGCATTGCTTGTTGAATCGATCAAAGACTCTCAGGCCTCTTGGACTGA
GTCAAAAGTTAAATTGGAGAAGGATCCACAAGGGCGCGCATCCAATCCTGATTTAGATTCATCTGACACAGAAAAGTTATTCAGAGAACATGTAAAGATGCTGCAAGAGC
GGTGTGCAAACGAGTTCAGAACTCTATTATCTGAAGCCTTTACAGCTGAGGTGGTGACTCAGGTATCTGAAGATGGAAAGACGGTTCTTAATTCATGGACGATGGCTAAA
AGAATTTTGAAGCCCGATCTCAGATATAGTAAAGTTCCAAGGAAGGAAAGGGAGGCACTTTGGCGTCGATATGCTGATGATACATTGCGGAAGCAGAAGTTGGCAAATGA
TCCTAAGGGAGAAAAACATAACGACTTTAAGAGTAGAGCAACCATTGATGCTGGAAAATTTCCTTCTAAACCAAGAATCCATGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTAAGTAGGGTCCTTTGTCTGAAGAAGGCTGCCGTTGAAAAAGCTCAAGCTTTATGGGCTGCTTCCACCACTAGTTTTAAGTCCATGCTGCAGGAGAGAGGAGATAT
CAACGTCAATTCCCGTTGGTTCAGGGTAAAAGATAGTCTACGGGACGATCCAAGATACAGATCTGTTAAGCATGAGGAGCGTGAGATGTTATTCAATGAGTACATATCTG
AACTTAAGGCTGTTGAGGAGGAAAAGCAGCGTGAATCAAAAGCTAGAAAGGAGGAGCAGGAGAAACTGAAGGAAAGGGAGAGAGAATGGCGGAAAAGGAAGGAAAGAGAA
GAGCAAGAAATGGAAAGGGTGCGCCTAAAAGTACGGAAAAAAGAGGCAGTTGCATCTTTTCAAGCATTGCTTGTTGAATCGATCAAAGACTCTCAGGCCTCTTGGACTGA
GTCAAAAGTTAAATTGGAGAAGGATCCACAAGGGCGCGCATCCAATCCTGATTTAGATTCATCTGACACAGAAAAGTTATTCAGAGAACATGTAAAGATGCTGCAAGAGC
GGTGTGCAAACGAGTTCAGAACTCTATTATCTGAAGCCTTTACAGCTGAGGTGGTGACTCAGGTATCTGAAGATGGAAAGACGGTTCTTAATTCATGGACGATGGCTAAA
AGAATTTTGAAGCCCGATCTCAGATATAGTAAAGTTCCAAGGAAGGAAAGGGAGGCACTTTGGCGTCGATATGCTGATGATACATTGCGGAAGCAGAAGTTGGCAAATGA
TCCTAAGGGAGAAAAACATAACGACTTTAAGAGTAGAGCAACCATTGATGCTGGAAAATTTCCTTCTAAACCAAGAATCCATGAGTGAAGAAAGTTTGAAGCCTTTTGTT
TCATCTCATTCGAATTTTTTGGTCTACGGGCAGACGTTCTCTTCCTATCACGATTATTTATTCATGGGGATGGCTGGGGGGAACACGTTCAGTCCTGATATAACTAGTTT
TTTCAAGTGCACCTTTTTGGTGATTTGTTAGTTTACTCGAAAATATATTTACACTGCCAAAGGAACTGGTTCGGCAATTAAAATAGTTTAGGGTACAATTCCTTTCGATC
TGGTTCTTTTCAATATTATATATGTTATAGGATGGTTTAATAGTTGAGAATTCACATGCCATTGTAGTAACTAGTTTGGCCATCGTATCGATAACAGCGGTTACTGGGTT
GGAAATAGTTCCCAAATCAGGACATGCACGTTCTTAAAAGGATCATTATATCATGTTAAGCAACTTTCAAAAACTGTTCATTCAGCACAGCATTGTGCAGAACAGAAGTG
TAGGTTAAATTAGACTGGCTTGTTTACAATTTTCCCTGCCCGGCTGGCCATGAGTTTTCTGAGAT
Protein sequenceShow/hide protein sequence
MLSRVLCLKKAAVEKAQALWAASTTSFKSMLQERGDINVNSRWFRVKDSLRDDPRYRSVKHEEREMLFNEYISELKAVEEEKQRESKARKEEQEKLKEREREWRKRKERE
EQEMERVRLKVRKKEAVASFQALLVESIKDSQASWTESKVKLEKDPQGRASNPDLDSSDTEKLFREHVKMLQERCANEFRTLLSEAFTAEVVTQVSEDGKTVLNSWTMAK
RILKPDLRYSKVPRKEREALWRRYADDTLRKQKLANDPKGEKHNDFKSRATIDAGKFPSKPRIHE