CuGenDBv2

Gene ID	Lsi02G028440
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	WD repeat-containing protein 49 isoform 2
Genome location	chr02:34627644..34629310
RNA-Seq Expression	Lsi02G028440
Synteny	Lsi02G028440
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0059346.1 WD repeat-containing protein 49 isoform 2 [Cucumis melo var. makuwa]

1.3e-84

73.3

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Query:  MKAMAA-SNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPGCVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDV
        MKAMAA S+ PVQISP TCC  F RQINTFNT HRRL FTN KGLGIGWY CGV VRSPGCVV AVAG +ERE+ SS WDE+PYELLPNG+IQYIDE DV
Subjt:  MKAMAA-SNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPGCVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDV

Query:  VTFLDPPKELIPLDPASYNPAAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL---------------------
         +FLDPPKELIPLDPASYNPAAYLWKKIE IPEERRHRLLHLLTPRCISRAWGIAG+RYED KLVKK ASSLL NEDG+                     
Subjt:  VTFLDPPKELIPLDPASYNPAAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL---------------------

Query:  ------ALVSCKDGKTYGRII
              A+ SCKDGK YGRII
Subjt:  ------ALVSCKDGKTYGRII

TYK03979.1 WD repeat-containing protein 49 isoform 2 [Cucumis melo var. makuwa]

6.0e-85

74.31

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Query:  MKAMAA-SNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPGCVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDV
        MKAMAA S+ PVQISP TCC  F RQINTFNT HRRL FTN KGLGIGWY CGV VRSPGCVV AVAG +ERE+ SS WDE+PYELLPNG+IQYIDE DV
Subjt:  MKAMAA-SNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPGCVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDV

Query:  VTFLDPPKELIPLDPASYNPAAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL---------------------
         +FLDPPKELIPLDPASYNPAAYLWKKIE IPEERRHRLLHLLTPRCISRAWGIAG+RYED KLVKK ASSLL NEDG+                     
Subjt:  VTFLDPPKELIPLDPASYNPAAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL---------------------

Query:  ---ALVSCKDGKTYGRII
           A+ SCKDGK YGRII
Subjt:  ---ALVSCKDGKTYGRII

XP_004141740.2 uncharacterized protein LOC101213828 [Cucumis sativus]

4.4e-88

77.06

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Query:  MKAMAA-SNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPGCVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDV
        MKAMAA SN P+QISP TCC  F RQINTFNT HRRL FTN KGLGIGWY CGV VRSPGCVVAA AGGREREQVSS WDEEPYELLPNG+IQYIDEQDV
Subjt:  MKAMAA-SNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPGCVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDV

Query:  VTFLDPPKELIPLDPASYNPAAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL---------------------
         +FLDPPKELIP DP SYNPAAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYED KLVKKTASSLL NEDG+                     
Subjt:  VTFLDPPKELIPLDPASYNPAAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL---------------------

Query:  ---ALVSCKDGKTYGRII
           A+ S KDGK YGRII
Subjt:  ---ALVSCKDGKTYGRII

XP_008462224.1 PREDICTED: uncharacterized protein LOC103500630 [Cucumis melo]

2.0e-85

74.77

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Query:  MKAMAA-SNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPGCVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDV
        MKAMAA S+ PVQISP TCC  F RQINTFNT HRRL FTN KGLGIGWY CGV VRSPGCVVAAVAG +ERE+ SS WDE+PYELLPNG+IQYIDE DV
Subjt:  MKAMAA-SNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPGCVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDV

Query:  VTFLDPPKELIPLDPASYNPAAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL---------------------
         +FLDPPKELIPLDPASYNPAAYLWKKIE IPEERRHRLLHLLTPRCISRAWGIAG+RYED KLVKK ASSLL NEDG+                     
Subjt:  VTFLDPPKELIPLDPASYNPAAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL---------------------

Query:  ---ALVSCKDGKTYGRII
           A+ SCKDGK YGRII
Subjt:  ---ALVSCKDGKTYGRII

XP_038899771.1 uncharacterized protein LOC120087001 [Benincasa hispida]

1.3e-92

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Query:  MKAMAASNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPGC-VVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDV
        MKAMAAS+  VQISPGTCC PF  QINTFNTP RRLCFTNSKGLGIGWYGCG+ VRSPGC VVAA+AGGREREQ SSAWDEEPYELLPNGKIQY+DEQDV
Subjt:  MKAMAASNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPGC-VVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDV

Query:  VTFLDPPKELIPLDPASYNPAAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL---------------------
        VTFLDPPKELIPLD ASYNPAAYLWKKIE+IPEERRHRLL LLTPRCISRAWGIAGTRYED KL+KK ASSLL NEDG+                     
Subjt:  VTFLDPPKELIPLDPASYNPAAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL---------------------

Query:  ---ALVSCKDGKTYGRIIG
           AL SCKDGKTYGRIIG
Subjt:  ---ALVSCKDGKTYGRIIG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KCA7 Uncharacterized protein

5.3e-87

76.53

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Query:  AASNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPGCVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDVVTFLD
        A SN P+QISP TCC  F RQINTFNT HRRL FTN KGLGIGWY CGV VRSPGCVVAA AGGREREQVSS WDEEPYELLPNG+IQYIDEQDV +FLD
Subjt:  AASNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPGCVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDVVTFLD

Query:  PPKELIPLDPASYNPAAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL------------------------AL
        PPKELIP DP SYNPAAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYED KLVKKTASSLL NEDG+                        A+
Subjt:  PPKELIPLDPASYNPAAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL------------------------AL

Query:  VSCKDGKTYGRII
         S KDGK YGRII
Subjt:  VSCKDGKTYGRII

A0A1S3CGG5 uncharacterized protein LOC103500630

9.9e-86

74.77

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Query:  MKAMAA-SNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPGCVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDV
        MKAMAA S+ PVQISP TCC  F RQINTFNT HRRL FTN KGLGIGWY CGV VRSPGCVVAAVAG +ERE+ SS WDE+PYELLPNG+IQYIDE DV
Subjt:  MKAMAA-SNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPGCVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDV

Query:  VTFLDPPKELIPLDPASYNPAAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL---------------------
         +FLDPPKELIPLDPASYNPAAYLWKKIE IPEERRHRLLHLLTPRCISRAWGIAG+RYED KLVKK ASSLL NEDG+                     
Subjt:  VTFLDPPKELIPLDPASYNPAAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL---------------------

Query:  ---ALVSCKDGKTYGRII
           A+ SCKDGK YGRII
Subjt:  ---ALVSCKDGKTYGRII

A0A5A7UYS3 WD repeat-containing protein 49 isoform 2

6.4e-85

73.3

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Query:  MKAMAA-SNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPGCVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDV
        MKAMAA S+ PVQISP TCC  F RQINTFNT HRRL FTN KGLGIGWY CGV VRSPGCVV AVAG +ERE+ SS WDE+PYELLPNG+IQYIDE DV
Subjt:  MKAMAA-SNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPGCVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDV

Query:  VTFLDPPKELIPLDPASYNPAAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL---------------------
         +FLDPPKELIPLDPASYNPAAYLWKKIE IPEERRHRLLHLLTPRCISRAWGIAG+RYED KLVKK ASSLL NEDG+                     
Subjt:  VTFLDPPKELIPLDPASYNPAAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL---------------------

Query:  ------ALVSCKDGKTYGRII
              A+ SCKDGK YGRII
Subjt:  ------ALVSCKDGKTYGRII

A0A5D3C0T8 WD repeat-containing protein 49 isoform 2

2.9e-85

74.31

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Query:  MKAMAA-SNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPGCVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDV
        MKAMAA S+ PVQISP TCC  F RQINTFNT HRRL FTN KGLGIGWY CGV VRSPGCVV AVAG +ERE+ SS WDE+PYELLPNG+IQYIDE DV
Subjt:  MKAMAA-SNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPGCVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDV

Query:  VTFLDPPKELIPLDPASYNPAAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL---------------------
         +FLDPPKELIPLDPASYNPAAYLWKKIE IPEERRHRLLHLLTPRCISRAWGIAG+RYED KLVKK ASSLL NEDG+                     
Subjt:  VTFLDPPKELIPLDPASYNPAAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGL---------------------

Query:  ---ALVSCKDGKTYGRII
           A+ SCKDGK YGRII
Subjt:  ---ALVSCKDGKTYGRII

A0A6J1KHW6 uncharacterized protein LOC111494560

9.6e-81

72.48

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Query:  MKAMAASNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPGCVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDVV
        MKAMAAS+ PVQIS GTC FPFSRQINTF  P RRLC+TNSKGL   W+G GV V  P   VAAVAGGRER QVS+AWDE PYELLPNGKIQY+DEQDVV
Subjt:  MKAMAASNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPGCVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDVV

Query:  TFLDPPKELIPLDPASYNPAAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDG-----------------------
        TFLDPPKELIPLDP +YNPAAYLWKKIE IPEERRH LLHLL+PRCISRAWGIAGTRY+D KLVKK ASSLL N+DG                       
Subjt:  TFLDPPKELIPLDPASYNPAAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDG-----------------------

Query:  -LALVSCKDGKTYGRIIG
          AL SCKDGKTYGR IG
Subjt:  -LALVSCKDGKTYGRIIG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G73090.1 unknown protein

3.5e-43

75.89

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Query:  CVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDVVTFLDPPKELIPLDPASYNPAAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYE
        CVV AV GGR  E   S WDE+PYE LP GK  Y+DE DVVTFLDPPKELIPLDPASYNPAAYLWKKIE+IPEERRH LL LL PR ISRAW IA TRYE
Subjt:  CVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDVVTFLDPPKELIPLDPASYNPAAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYE

Query:  DTKLVKKTASSL
        D KL K TAS +
Subjt:  DTKLVKKTASSL

AT1G73090.2 unknown protein

1.2e-38

60.71

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Query:  CVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDVVTFLDPPKELIPLDPASYNPAAYLWKKIEEIPEERRHRLLHLLTP---------------
        CVV AV GGR  E   S WDE+PYE LP GK  Y+DE DVVTFLDPPKELIPLDPASYNPAAYLWKKIE+IPEERRH LL LL P               
Subjt:  CVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDVVTFLDPPKELIPLDPASYNPAAYLWKKIEEIPEERRHRLLHLLTP---------------

Query:  -------------RCISRAWGIAGTRYEDTKLVKKTASSL
                     R ISRAW IA TRYED KL K TAS +
Subjt:  -------------RCISRAWGIAGTRYEDTKLVKKTASSL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAAGGCAATGGCAGCTTCGAACCATCCCGTTCAGATTTCCCCAGGGACCTGCTGTTTCCCATTTTCCCGCCAAATCAACACCTTCAACACACCGCACCGGCGCCTCTG
CTTTACGAACTCCAAAGGACTGGGAATCGGATGGTACGGATGTGGAGTTTATGTACGGTCACCTGGTTGTGTGGTCGCTGCTGTAGCGGGAGGTAGGGAGAGGGAGCAAG
TATCTTCTGCGTGGGATGAGGAGCCTTACGAATTGCTTCCGAACGGGAAGATACAGTACATAGATGAACAAGATGTAGTAACCTTTCTTGATCCGCCTAAGGAGCTTATA
CCATTAGACCCTGCTTCTTATAATCCTGCTGCTTATCTTTGGAAAAAGATTGAAGAAATTCCTGAGGAACGACGTCATAGACTTTTGCACCTCCTAACCCCTAGGTGTAT
ATCAAGGGCTTGGGGAATAGCTGGCACACGATATGAGGATACAAAGTTAGTTAAAAAAACGGCATCTAGTTTGCTGCCAAATGAAGATGGCTTGGCATTAGTTTCTTGCA
AGGATGGAAAGACATATGGGCGGATTATTGGTAAGGTCTCTCGACCTTTGGCAACTATATGTGCTTCTCCTCTAATGACATTAGGAACTCAG

mRNA sequence

Show/hide mRNA sequence

GCTTGAACAAGATGAAGGCAATGGCAGCTTCGAACCATCCCGTTCAGATTTCCCCAGGGACCTGCTGTTTCCCATTTTCCCGCCAAATCAACACCTTCAACACACCGCAC
CGGCGCCTCTGCTTTACGAACTCCAAAGGACTGGGAATCGGATGGTACGGATGTGGAGTTTATGTACGGTCACCTGGTTGTGTGGTCGCTGCTGTAGCGGGAGGTAGGGA
GAGGGAGCAAGTATCTTCTGCGTGGGATGAGGAGCCTTACGAATTGCTTCCGAACGGGAAGATACAGTACATAGATGAACAAGATGTAGTAACCTTTCTTGATCCGCCTA
AGGAGCTTATACCATTAGACCCTGCTTCTTATAATCCTGCTGCTTATCTTTGGAAAAAGATTGAAGAAATTCCTGAGGAACGACGTCATAGACTTTTGCACCTCCTAACC
CCTAGGTGTATATCAAGGGCTTGGGGAATAGCTGGCACACGATATGAGGATACAAAGTTAGTTAAAAAAACGGCATCTAGTTTGCTGCCAAATGAAGATGGCTTGGCATT
AGTTTCTTGCAAGGATGGAAAGACATATGGGCGGATTATTGGTAAGGTCTCTCGACCTTTGGCAACTATATGTGCTTCTCCTCTAATGACATTAGGAACTCAG

Protein sequence

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MKAMAASNHPVQISPGTCCFPFSRQINTFNTPHRRLCFTNSKGLGIGWYGCGVYVRSPGCVVAAVAGGREREQVSSAWDEEPYELLPNGKIQYIDEQDVVTFLDPPKELI
PLDPASYNPAAYLWKKIEEIPEERRHRLLHLLTPRCISRAWGIAGTRYEDTKLVKKTASSLLPNEDGLALVSCKDGKTYGRIIGKVSRPLATICASPLMTLGTQ

Lsi02G028440 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome