CuGenDBv2

Gene ID	Lsi02G028450
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	WD repeat-containing protein 49 isoform 2
Genome location	chr02:34629418..34630564
RNA-Seq Expression	Lsi02G028450
Synteny	Lsi02G028450
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0059346.1 WD repeat-containing protein 49 isoform 2 [Cucumis melo var. makuwa]

2.3e-39

46.4

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Query:  MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLKYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPV
        + M LLAGFANSVSPLYFEVKQLKEVMSTEHPCDLA++FGDGLFDIHEYPEGFP                                              
Subjt:  MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLKYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPV

Query:  FLGLARKFQGLCNKSSTIVFLEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV
                                                                      P KHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV
Subjt:  FLGLARKFQGLCNKSSTIVFLEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV

Query:  PRKLCAEILMIKDYSQR-PLQK
        P+KLC EILMIKDY+Q+ PLQK
Subjt:  PRKLCAEILMIKDYSQR-PLQK

TYK03979.1 WD repeat-containing protein 49 isoform 2 [Cucumis melo var. makuwa]

2.3e-39

46.4

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Query:  MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLKYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPV
        + M LLAGFANSVSPLYFEVKQLKEVMSTEHPCDLA++FGDGLFDIHEYPEGFP                                              
Subjt:  MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLKYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPV

Query:  FLGLARKFQGLCNKSSTIVFLEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV
                                                                      P KHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV
Subjt:  FLGLARKFQGLCNKSSTIVFLEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV

Query:  PRKLCAEILMIKDYSQR-PLQK
        P+KLC EILMIKDY+Q+ PLQK
Subjt:  PRKLCAEILMIKDYSQR-PLQK

XP_004141740.2 uncharacterized protein LOC101213828 [Cucumis sativus]

1.7e-42

48.2

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Query:  MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLKYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPV
        + M LLAGFANSVSPLYFE+KQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPA                                             
Subjt:  MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLKYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPV

Query:  FLGLARKFQGLCNKSSTIVFLEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV
                                                                      P KHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV
Subjt:  FLGLARKFQGLCNKSSTIVFLEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV

Query:  PRKLCAEILMIKDYSQRPLQKQ
        P+KLC EILMIKDYSQ+PLQKQ
Subjt:  PRKLCAEILMIKDYSQRPLQKQ

XP_022148503.1 uncharacterized protein LOC111017125 isoform X1 [Momordica charantia]

2.5e-38

45.05

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Query:  MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLKYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPV
        +G+SLLAG ANS +PLYFEVKQLKEVMSTE PCDLAYEFGDGLF+IHEYPEGFP                                              
Subjt:  MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLKYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPV

Query:  FLGLARKFQGLCNKSSTIVFLEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV
                                                                      P KH YPFNDQ+V+YVRYLGPGVLVGQAWQEGKALEQV
Subjt:  FLGLARKFQGLCNKSSTIVFLEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV

Query:  PRKLCAEILMIKDYSQRPLQKQ
        PRKLCAEILMIKDYS RPLQ++
Subjt:  PRKLCAEILMIKDYSQRPLQKQ

XP_038899771.1 uncharacterized protein LOC120087001 [Benincasa hispida]

2.0e-43

49.1

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Query:  MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLKYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPV
        +GMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYP GFPA                                             
Subjt:  MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLKYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPV

Query:  FLGLARKFQGLCNKSSTIVFLEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV
                                                                      P KHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV
Subjt:  FLGLARKFQGLCNKSSTIVFLEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV

Query:  PRKLCAEILMIKDYSQRPLQKQ
        PRKLCAEILMIKDYS+ P+QKQ
Subjt:  PRKLCAEILMIKDYSQRPLQKQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KCA7 Uncharacterized protein

8.2e-43

48.2

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Query:  MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLKYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPV
        + M LLAGFANSVSPLYFE+KQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPA                                             
Subjt:  MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLKYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPV

Query:  FLGLARKFQGLCNKSSTIVFLEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV
                                                                      P KHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV
Subjt:  FLGLARKFQGLCNKSSTIVFLEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV

Query:  PRKLCAEILMIKDYSQRPLQKQ
        P+KLC EILMIKDYSQ+PLQKQ
Subjt:  PRKLCAEILMIKDYSQRPLQKQ

A0A5A7UYS3 WD repeat-containing protein 49 isoform 2

1.1e-39

46.4

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Query:  MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLKYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPV
        + M LLAGFANSVSPLYFEVKQLKEVMSTEHPCDLA++FGDGLFDIHEYPEGFP                                              
Subjt:  MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLKYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPV

Query:  FLGLARKFQGLCNKSSTIVFLEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV
                                                                      P KHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV
Subjt:  FLGLARKFQGLCNKSSTIVFLEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV

Query:  PRKLCAEILMIKDYSQR-PLQK
        P+KLC EILMIKDY+Q+ PLQK
Subjt:  PRKLCAEILMIKDYSQR-PLQK

A0A5D3C0T8 WD repeat-containing protein 49 isoform 2

1.1e-39

46.4

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Query:  MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLKYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPV
        + M LLAGFANSVSPLYFEVKQLKEVMSTEHPCDLA++FGDGLFDIHEYPEGFP                                              
Subjt:  MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLKYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPV

Query:  FLGLARKFQGLCNKSSTIVFLEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV
                                                                      P KHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV
Subjt:  FLGLARKFQGLCNKSSTIVFLEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV

Query:  PRKLCAEILMIKDYSQR-PLQK
        P+KLC EILMIKDY+Q+ PLQK
Subjt:  PRKLCAEILMIKDYSQR-PLQK

A0A6J1D498 uncharacterized protein LOC111017125 isoform X1

1.2e-38

45.05

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Query:  MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLKYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPV
        +G+SLLAG ANS +PLYFEVKQLKEVMSTE PCDLAYEFGDGLF+IHEYPEGFP                                              
Subjt:  MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLKYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPV

Query:  FLGLARKFQGLCNKSSTIVFLEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV
                                                                      P KH YPFNDQ+V+YVRYLGPGVLVGQAWQEGKALEQV
Subjt:  FLGLARKFQGLCNKSSTIVFLEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV

Query:  PRKLCAEILMIKDYSQRPLQKQ
        PRKLCAEILMIKDYS RPLQ++
Subjt:  PRKLCAEILMIKDYSQRPLQKQ

A0A6J1D593 uncharacterized protein LOC111017125 isoform X2

1.2e-38

45.05

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Query:  MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLKYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPV
        +G+SLLAG ANS +PLYFEVKQLKEVMSTE PCDLAYEFGDGLF+IHEYPEGFP                                              
Subjt:  MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLKYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPV

Query:  FLGLARKFQGLCNKSSTIVFLEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV
                                                                      P KH YPFNDQ+V+YVRYLGPGVLVGQAWQEGKALEQV
Subjt:  FLGLARKFQGLCNKSSTIVFLEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQV

Query:  PRKLCAEILMIKDYSQRPLQKQ
        PRKLCAEILMIKDYS RPLQ++
Subjt:  PRKLCAEILMIKDYSQRPLQKQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G73090.1 unknown protein

3.8e-24

30.52

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Query:  GMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLKYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPVF
        G  +++  AN+ SPLYFEV +  EVM+TE PCD+A +FGDGL  I +YP+GFP                                               
Subjt:  GMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLKYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPVF

Query:  LGLARKFQGLCNKSSTIVFLEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQVP
                                                                     P KH YPFND VV+Y+R++GPGV VGQAWQEG+ L+QVP
Subjt:  LGLARKFQGLCNKSSTIVFLEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQVP

Query:  RKLCAEILMIKDY
        ++LC++ILM+K Y
Subjt:  RKLCAEILMIKDY

AT1G73090.2 unknown protein

3.8e-24

30.52

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Query:  GMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLKYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPVF
        G  +++  AN+ SPLYFEV +  EVM+TE PCD+A +FGDGL  I +YP+GFP                                               
Subjt:  GMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLKYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPVF

Query:  LGLARKFQGLCNKSSTIVFLEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQVP
                                                                     P KH YPFND VV+Y+R++GPGV VGQAWQEG+ L+QVP
Subjt:  LGLARKFQGLCNKSSTIVFLEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQVP

Query:  RKLCAEILMIKDY
        ++LC++ILM+K Y
Subjt:  RKLCAEILMIKDY

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGCATGTCTTTACTGGCTGGATTTGCAAATTCCGTTAGTCCATTGTACTTTGAGGTGAAACAACTTAAGGAAGTGATGTCAACTGAACATCCTTGTGACTTGGCATA
TGAATTCGGTGATGGGCTGTTTGATATTCATGAATACCCTGAAGGCTTTCCGGCTCCAGGTATGATGTTAAAATATGTGTCTTTATTCATATTGTTGAAACCTCATCAAA
TGTATTGGTTATTCCACGATACTATTTCAACCCAATCCTATGTTATCTATGCAAAACTGTTTGCTTTGCATGCCCCTGTTTTCTTGGGGCTCGCTAGGAAGTTTCAAGGT
CTTTGCAATAAAAGCTCCACTATTGTGTTTCTTGAAGGAGAGTTCCAAGTATTTACCATTAGGGACAAAATTAGAGACTTGAGAGATGTTTTGCATCTTTGGAGTAACAC
TCACAAATTTGAGATGCTCTCGCGCAGCATGCTTCTCCTTGGTTTTCCAACCAAGCATCTATATCCTTTCAACGACCAGGTTGTAGTATATGTTCGATATTTGGGACCTG
GAGTGTTAGTTGGCCAGGCATGGCAAGAAGGAAAAGCTCTGGAGCAGGTGCCGCGGAAATTATGTGCTGAAATATTGATGATCAAAGACTACAGTCAACGACCACTCCAA
AAGCAGTAG

mRNA sequence

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Protein sequence

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MGMSLLAGFANSVSPLYFEVKQLKEVMSTEHPCDLAYEFGDGLFDIHEYPEGFPAPGMMLKYVSLFILLKPHQMYWLFHDTISTQSYVIYAKLFALHAPVFLGLARKFQG
LCNKSSTIVFLEGEFQVFTIRDKIRDLRDVLHLWSNTHKFEMLSRSMLLLGFPTKHLYPFNDQVVVYVRYLGPGVLVGQAWQEGKALEQVPRKLCAEILMIKDYSQRPLQ
KQ

Lsi02G028450 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome