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Lsi02G028630 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G028630
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionEthylene-responsive transcription factor RAP2-12-like
Genome locationchr02:34859526..34859849
RNA-Seq ExpressionLsi02G028630
SyntenyLsi02G028630
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009873 - ethylene-activated signaling pathway (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR044808 - Ethylene-responsive transcription factor


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059363.1 ethylene-responsive transcription factor RAP2-12-like [Cucumis melo var. makuwa]3.4e-4190.53Show/hide
Query:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDSDLEFDVEELVDIKPPLVFSAGGNPPVPSARGN
        MCGGAIISGFIPPT SRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDF+HFKDDSDLEFDVEEL+D K PL FSA GNPPVPSAR +
Subjt:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDSDLEFDVEELVDIKPPLVFSAGGNPPVPSARGN

XP_004141728.1 ethylene-responsive transcription factor RAP2-12 isoform X1 [Cucumis sativus]7.2e-3987.37Show/hide
Query:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDSDLEFDVEELVDIKPPLVFSAGGNPPVPSARGN
        MCGGAIISGFIPP  SRRVTGEHLWPNLK+PAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDSDLEFDVEEL+D K PL FSA G+ PVPSAR +
Subjt:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDSDLEFDVEELVDIKPPLVFSAGGNPPVPSARGN

XP_008462249.2 PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor RAP2-12-like [Cucumis melo]3.4e-4190.53Show/hide
Query:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDSDLEFDVEELVDIKPPLVFSAGGNPPVPSARGN
        MCGGAIISGFIPPT SRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDF+HFKDDSDLEFDVEEL+D K PL FSA GNPPVPSAR +
Subjt:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDSDLEFDVEELVDIKPPLVFSAGGNPPVPSARGN

XP_023548217.1 ethylene-responsive transcription factor RAP2-12-like [Cucurbita pepo subsp. pepo]1.2e-3886.32Show/hide
Query:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDSDLEFDVEELVDIKPPLVFSAGGNPPVPSARGN
        MCGGA+ISGFIP T SRRVTGEHLWPNLKKP FGNQLSKPVKSDIIDIDDDFETDFQHFKDDSDLEFDVEELVD+K    FSAGG+P VPSAR +
Subjt:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDSDLEFDVEELVDIKPPLVFSAGGNPPVPSARGN

XP_038897863.1 ethylene-responsive transcription factor RAP2-12-like [Benincasa hispida]4.5e-4189.47Show/hide
Query:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDSDLEFDVEELVDIKPPLVFSAGGNPPVPSARGN
        MCGGAIISGFIPPT SRRVTGEHLWPNLKKP FGNQLS PVKSDIIDIDDDFETDFQHFKDDSDLEFDVEEL+DIK PL FSA GNPP+PSAR +
Subjt:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDSDLEFDVEELVDIKPPLVFSAGGNPPVPSARGN

TrEMBL top hitse value%identityAlignment
A0A0A0K9C0 AP2/ERF domain-containing protein3.5e-3987.37Show/hide
Query:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDSDLEFDVEELVDIKPPLVFSAGGNPPVPSARGN
        MCGGAIISGFIPP  SRRVTGEHLWPNLK+PAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDSDLEFDVEEL+D K PL FSA G+ PVPSAR +
Subjt:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDSDLEFDVEELVDIKPPLVFSAGGNPPVPSARGN

A0A1S3CGJ8 LOW QUALITY PROTEIN: ethylene-responsive transcription factor RAP2-12-like1.7e-4190.53Show/hide
Query:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDSDLEFDVEELVDIKPPLVFSAGGNPPVPSARGN
        MCGGAIISGFIPPT SRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDF+HFKDDSDLEFDVEEL+D K PL FSA GNPPVPSAR +
Subjt:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDSDLEFDVEELVDIKPPLVFSAGGNPPVPSARGN

A0A5A7UTW2 Ethylene-responsive transcription factor RAP2-12-like1.7e-4190.53Show/hide
Query:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDSDLEFDVEELVDIKPPLVFSAGGNPPVPSARGN
        MCGGAIISGFIPPT SRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDF+HFKDDSDLEFDVEEL+D K PL FSA GNPPVPSAR +
Subjt:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDSDLEFDVEELVDIKPPLVFSAGGNPPVPSARGN

A0A6J1GQP0 ethylene-responsive transcription factor RAP2-12-like5.9e-3986.32Show/hide
Query:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDSDLEFDVEELVDIKPPLVFSAGGNPPVPSARGN
        MCGGA+ISGFIP T SRRVTGEHLWPNLKKP FGNQLSKPVKSDIIDIDDDFETDFQHFKDDSDLEFDVEELVD+K    FSAGG+P VPSAR +
Subjt:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDSDLEFDVEELVDIKPPLVFSAGGNPPVPSARGN

A0A6J1JPD1 ethylene-responsive transcription factor RAP2-12-like3.8e-3885.26Show/hide
Query:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDSDLEFDVEELVDIKPPLVFSAGGNPPVPSARGN
        MCGGA+IS FIP T SRRVTGEHLWPNLKKP FGNQLSKPVKSDIIDIDDDFETDFQHFKDDSDLEFDVEELVD+K    FSAGG+P VPSAR +
Subjt:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDSDLEFDVEELVDIKPPLVFSAGGNPPVPSARGN

SwissProt top hitse value%identityAlignment
Q6K7E6 Ethylene-responsive transcription factor 15.8e-0742.86Show/hide
Query:  MCGGAIISGFI-PPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFK---DDSDLEF---DVEELVDIKP
        MCGGAII      P  SRR T   LWP  KKP +G    +     + + D+DFE DF+ F+    DSDLE    D +++V+IKP
Subjt:  MCGGAIISGFI-PPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFK---DDSDLEF---DVEELVDIKP

Q9LUM4 Ethylene-responsive transcription factor RAP2-21.0e-1652.81Show/hide
Query:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDS--DLEFDVEELVDIKPPLVFSAGGNP
        MCGGAIIS FIPP  S RVT E +WP+LK     ++     +SD  D+DDDFE DFQ FKDDS  D E D +  V++K P VF+A   P
Subjt:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDS--DLEFDVEELVDIKPPLVFSAGGNP

Q9SSA8 Ethylene-responsive transcription factor RAP2-121.6e-1748.04Show/hide
Query:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDS----DLEFDVEELVDIKPPLVFSAGGNPPVPSARGNF
        MCGGAIIS FIPP  SRRVT E +WP+LKK   G++ S   +S+  D D +FE DFQ FKDDS    D +FDV ++     P VF++   P V +A    
Subjt:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDS----DLEFDVEELVDIKPPLVFSAGGNPPVPSARGNF

Query:  LF
        +F
Subjt:  LF

Arabidopsis top hitse value%identityAlignment
AT1G53910.1 related to AP2 121.1e-1848.04Show/hide
Query:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDS----DLEFDVEELVDIKPPLVFSAGGNPPVPSARGNF
        MCGGAIIS FIPP  SRRVT E +WP+LKK   G++ S   +S+  D D +FE DFQ FKDDS    D +FDV ++     P VF++   P V +A    
Subjt:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDS----DLEFDVEELVDIKPPLVFSAGGNPPVPSARGNF

Query:  LF
        +F
Subjt:  LF

AT1G53910.2 related to AP2 121.1e-1848.04Show/hide
Query:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDS----DLEFDVEELVDIKPPLVFSAGGNPPVPSARGNF
        MCGGAIIS FIPP  SRRVT E +WP+LKK   G++ S   +S+  D D +FE DFQ FKDDS    D +FDV ++     P VF++   P V +A    
Subjt:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDS----DLEFDVEELVDIKPPLVFSAGGNPPVPSARGNF

Query:  LF
        +F
Subjt:  LF

AT1G53910.3 related to AP2 122.0e-1850Show/hide
Query:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDS----DLEFDVEELVDIKPPLVFSAGGNPPVPSA
        MCGGAIIS FIPP  SRRVT E +WP+LKK   G++ S   +S+  D D +FE DFQ FKDDS    D +FDV ++     P VF++   P V +A
Subjt:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDS----DLEFDVEELVDIKPPLVFSAGGNPPVPSA

AT3G14230.1 related to AP2 27.5e-1852.81Show/hide
Query:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDS--DLEFDVEELVDIKPPLVFSAGGNP
        MCGGAIIS FIPP  S RVT E +WP+LK     ++     +SD  D+DDDFE DFQ FKDDS  D E D +  V++K P VF+A   P
Subjt:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDS--DLEFDVEELVDIKPPLVFSAGGNP

AT3G14230.2 related to AP2 27.5e-1852.81Show/hide
Query:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDS--DLEFDVEELVDIKPPLVFSAGGNP
        MCGGAIIS FIPP  S RVT E +WP+LK     ++     +SD  D+DDDFE DFQ FKDDS  D E D +  V++K P VF+A   P
Subjt:  MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDS--DLEFDVEELVDIKPPLVFSAGGNP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGGAGGTGCTATAATCTCCGGCTTCATTCCGCCGACTTGCTCCCGGCGAGTCACCGGCGAACACCTTTGGCCCAATCTCAAGAAACCTGCCTTCGGAAATCAATT
GTCGAAGCCGGTCAAGTCTGATATCATTGACATTGATGATGATTTCGAGACTGATTTTCAGCATTTCAAGGACGATTCCGATTTGGAATTTGATGTGGAGGAGCTTGTCG
ACATCAAACCCCCCCTTGTCTTCTCTGCTGGTGGAAACCCTCCCGTTCCTTCTGCTCGTGGTAACTTTCTTTTCATAATTCATTTGACTTTAAGCTTTCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGGAGGTGCTATAATCTCCGGCTTCATTCCGCCGACTTGCTCCCGGCGAGTCACCGGCGAACACCTTTGGCCCAATCTCAAGAAACCTGCCTTCGGAAATCAATT
GTCGAAGCCGGTCAAGTCTGATATCATTGACATTGATGATGATTTCGAGACTGATTTTCAGCATTTCAAGGACGATTCCGATTTGGAATTTGATGTGGAGGAGCTTGTCG
ACATCAAACCCCCCCTTGTCTTCTCTGCTGGTGGAAACCCTCCCGTTCCTTCTGCTCGTGGTAACTTTCTTTTCATAATTCATTTGACTTTAAGCTTTCTTTGA
Protein sequenceShow/hide protein sequence
MCGGAIISGFIPPTCSRRVTGEHLWPNLKKPAFGNQLSKPVKSDIIDIDDDFETDFQHFKDDSDLEFDVEELVDIKPPLVFSAGGNPPVPSARGNFLFIIHLTLSFL