CuGenDBv2

Gene ID	Lsi02G028650
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	LEA_2 domain-containing protein
Genome location	chr02:34864087..34864656
RNA-Seq Expression	Lsi02G028650
Synteny	Lsi02G028650
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR004864 - Late embryogenesis abundant protein, LEA_2 subgroup

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0059364.1 uncharacterized protein E6C27_scaffold242G00900 [Cucumis melo var. makuwa]

1.3e-78

90.4

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Query:  MDVLAISETPISNRFCCEQICTLYTLKRFCLFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVTSGSPILSSVFTLTLNSQNPNKIG
        MDVL   +TP S+RFCC+QICTLYTLKRFCLFLLFVA+FSIIAIAIAALPVIFLLKPREPIFSLQS+RLDWYNIT+ SGSPILSSVFTLTLNSQNPNKIG
Subjt:  MDVLAISETPISNRFCCEQICTLYTLKRFCLFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVTSGSPILSSVFTLTLNSQNPNKIG

Query:  IKYSPSRLLLIYDGTAMIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHMAV
        IKYSPSRLLLIYDG+AMIGTIRVPEVFQPARSG+R VRTRLLLHQ +VDLLETMREFVEMKIIGDVGVELFVLHM V
Subjt:  IKYSPSRLLLIYDGTAMIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHMAV

XP_004141823.1 uncharacterized protein LOC101214000 [Cucumis sativus]

1.4e-77

86.81

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Query:  MDVLAISETPISNRFCCEQICTLYTLKRFCLFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVTSGSPILSSVFTLTLNSQNPNKIG
        MDVL   +TP S+RFCC+QICTLYTLKRFC FLLF+A+FSIIAIAIAALPVIFLLKPREPIFSL S+RLDWYNIT+ SGSPILSSVFTLTLNSQNPNK+G
Subjt:  MDVLAISETPISNRFCCEQICTLYTLKRFCLFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVTSGSPILSSVFTLTLNSQNPNKIG

Query:  IKYSPSRLLLIYDGTAMIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHMAVIKMKV
        IKYSPSRLLLIYD +A+IGTIRVPEVFQPARSG+R VRTRLLLHQ +VDLLET REFVEMKIIGDVGVELFVLHM VIKMKV
Subjt:  IKYSPSRLLLIYDGTAMIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHMAVIKMKV

XP_008462250.1 PREDICTED: uncharacterized protein LOC103500653 [Cucumis melo]

2.5e-79

89.56

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Query:  MDVLAISETPISNRFCCEQICTLYTLKRFCLFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVTSGSPILSSVFTLTLNSQNPNKIG
        MDVL   +TP S+RFCC+QI TLYTLKRFCLFLLF A+FSIIAIAIAALPVIFLLKPREPIFSLQS+RLDWYNIT+ SGSPILSSVFTLTLNSQNPNKIG
Subjt:  MDVLAISETPISNRFCCEQICTLYTLKRFCLFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVTSGSPILSSVFTLTLNSQNPNKIG

Query:  IKYSPSRLLLIYDGTAMIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHMAVIKMKV
        IKYSPSRLLLIYDG+AMIGTIRVPEVFQPARSG+R VRTRLLLHQ +VDLLETMREFVEMKIIGDVGVELFVLHM VIKMKV
Subjt:  IKYSPSRLLLIYDGTAMIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHMAVIKMKV

XP_022992383.1 uncharacterized protein LOC111488707 isoform X1 [Cucurbita maxima]

3.1e-77

86.81

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Query:  MDVLAISETPISNRFCCEQICTLYTLKRFCLFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVTSGSPILSSVFTLTLNSQNPNKIG
        MDVLA S T  SNRFCC QICTLYTLKRFCLFLLF+ALFSIIAIAIAALPVIFLLKPR+PIFSL+SLRLDWYNI++ SGSP +SSVFTLTL SQNPNKIG
Subjt:  MDVLAISETPISNRFCCEQICTLYTLKRFCLFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVTSGSPILSSVFTLTLNSQNPNKIG

Query:  IKYSPSRLLLIYDGTAMIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHMAVIKMKV
        IKYSPSRLLLI+DG AMIGTIRVPEVFQPARS DRSVRTRLLLH+FNVDL +   EFVEMKIIGD+GVELFVLHMAVIKMKV
Subjt:  IKYSPSRLLLIYDGTAMIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHMAVIKMKV

XP_038899414.1 NDR1/HIN1-like protein 13 [Benincasa hispida]

1.3e-80

91.21

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Query:  MDVLAISETPISNRFCCEQICTLYTLKRFCLFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVTSGSPILSSVFTLTLNSQNPNKIG
        MDVL  S TP S+RFCCEQICTLYTLKRFC FL  VALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITV SGSPILSSVFTLTLNSQNPNKIG
Subjt:  MDVLAISETPISNRFCCEQICTLYTLKRFCLFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVTSGSPILSSVFTLTLNSQNPNKIG

Query:  IKYSPSRLLLIYDGTAMIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHMAVIKMKV
        IKYSP+RLLLIYDGTA+IGTIRVPEVFQPARS D+SVRTRLLLHQF+VDLLET++EFVEMKIIGDVGVELFVLHMAVIKMKV
Subjt:  IKYSPSRLLLIYDGTAMIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHMAVIKMKV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K6V0 Uncharacterized protein

6.7e-78

86.81

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Query:  MDVLAISETPISNRFCCEQICTLYTLKRFCLFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVTSGSPILSSVFTLTLNSQNPNKIG
        MDVL   +TP S+RFCC+QICTLYTLKRFC FLLF+A+FSIIAIAIAALPVIFLLKPREPIFSL S+RLDWYNIT+ SGSPILSSVFTLTLNSQNPNK+G
Subjt:  MDVLAISETPISNRFCCEQICTLYTLKRFCLFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVTSGSPILSSVFTLTLNSQNPNKIG

Query:  IKYSPSRLLLIYDGTAMIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHMAVIKMKV
        IKYSPSRLLLIYD +A+IGTIRVPEVFQPARSG+R VRTRLLLHQ +VDLLET REFVEMKIIGDVGVELFVLHM VIKMKV
Subjt:  IKYSPSRLLLIYDGTAMIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHMAVIKMKV

A0A1S3CGG7 uncharacterized protein LOC103500653

1.2e-79

89.56

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Query:  MDVLAISETPISNRFCCEQICTLYTLKRFCLFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVTSGSPILSSVFTLTLNSQNPNKIG
        MDVL   +TP S+RFCC+QI TLYTLKRFCLFLLF A+FSIIAIAIAALPVIFLLKPREPIFSLQS+RLDWYNIT+ SGSPILSSVFTLTLNSQNPNKIG
Subjt:  MDVLAISETPISNRFCCEQICTLYTLKRFCLFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVTSGSPILSSVFTLTLNSQNPNKIG

Query:  IKYSPSRLLLIYDGTAMIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHMAVIKMKV
        IKYSPSRLLLIYDG+AMIGTIRVPEVFQPARSG+R VRTRLLLHQ +VDLLETMREFVEMKIIGDVGVELFVLHM VIKMKV
Subjt:  IKYSPSRLLLIYDGTAMIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHMAVIKMKV

A0A5A7UWA2 LEA_2 domain-containing protein

6.1e-79

90.4

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Query:  MDVLAISETPISNRFCCEQICTLYTLKRFCLFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVTSGSPILSSVFTLTLNSQNPNKIG
        MDVL   +TP S+RFCC+QICTLYTLKRFCLFLLFVA+FSIIAIAIAALPVIFLLKPREPIFSLQS+RLDWYNIT+ SGSPILSSVFTLTLNSQNPNKIG
Subjt:  MDVLAISETPISNRFCCEQICTLYTLKRFCLFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVTSGSPILSSVFTLTLNSQNPNKIG

Query:  IKYSPSRLLLIYDGTAMIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHMAV
        IKYSPSRLLLIYDG+AMIGTIRVPEVFQPARSG+R VRTRLLLHQ +VDLLETMREFVEMKIIGDVGVELFVLHM V
Subjt:  IKYSPSRLLLIYDGTAMIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHMAV

A0A6J1GP37 uncharacterized protein LOC111456218 isoform X1

9.7e-77

86.26

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Query:  MDVLAISETPISNRFCCEQICTLYTLKRFCLFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVTSGSPILSSVFTLTLNSQNPNKIG
        MDVLA S T  S+RFCC QICTLYTLKRFCLFLLF+ALFSIIAIAIAALPVIFLLKPR+PIFSL+SLRLDWYNI++ S SP +SSVFTLTLNS+NPNKIG
Subjt:  MDVLAISETPISNRFCCEQICTLYTLKRFCLFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVTSGSPILSSVFTLTLNSQNPNKIG

Query:  IKYSPSRLLLIYDGTAMIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHMAVIKMKV
        IKYSPSRLLLI+DG AMIGTIRVPEVFQPARS DRSVRTRLLLH+FNVDL +   EFVEMKIIGDVGVELFVLHMAVIKMKV
Subjt:  IKYSPSRLLLIYDGTAMIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHMAVIKMKV

A0A6J1JZ17 uncharacterized protein LOC111488707 isoform X1

1.5e-77

86.81

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Query:  MDVLAISETPISNRFCCEQICTLYTLKRFCLFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVTSGSPILSSVFTLTLNSQNPNKIG
        MDVLA S T  SNRFCC QICTLYTLKRFCLFLLF+ALFSIIAIAIAALPVIFLLKPR+PIFSL+SLRLDWYNI++ SGSP +SSVFTLTL SQNPNKIG
Subjt:  MDVLAISETPISNRFCCEQICTLYTLKRFCLFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVTSGSPILSSVFTLTLNSQNPNKIG

Query:  IKYSPSRLLLIYDGTAMIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHMAVIKMKV
        IKYSPSRLLLI+DG AMIGTIRVPEVFQPARS DRSVRTRLLLH+FNVDL +   EFVEMKIIGD+GVELFVLHMAVIKMKV
Subjt:  IKYSPSRLLLIYDGTAMIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHMAVIKMKV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G44380.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family

4.0e-06

33.33

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Query:  AIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVTSGSPILSSVFTLTLNSQNPNKIGIKYSPSRLLLIYDGTAMIGTIRVPEVFQPARS
        A +  A   +   KP++P F L S+ L    + +    P+L +   LT++  NPN   I YS +++ ++YDGT ++G+  V    QPARS
Subjt:  AIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVTSGSPILSSVFTLTLNSQNPNKIGIKYSPSRLLLIYDGTAMIGTIRVPEVFQPARS

AT5G11890.1 FUNCTIONS IN: molecular_function unknown

2.0e-05

33.33

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Query:  NRFCCEQICTLYTLKRFCLFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVTSGSPI--LSSVFTLTLNSQNPNK-IGIKYSPSRLL
        +R  C +IC        C + + + L   +  AIAA  +  +  PR P FS+ S+R+   N+T +S S +  LSS F  TL S+NPN+ +   Y P  + 
Subjt:  NRFCCEQICTLYTLKRFCLFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVTSGSPI--LSSVFTLTLNSQNPNK-IGIKYSPSRLL

Query:  L--IYDGTAMIGTIRVPEVF
        +     GT M+G   VP  F
Subjt:  L--IYDGTAMIGTIRVPEVF

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGATGTTCTTGCAATATCCGAAACTCCAATTTCAAATCGCTTTTGCTGCGAACAGATCTGTACACTTTATACTCTAAAACGATTCTGCCTTTTCCTTCTCTTTGTCGC
TCTCTTTTCGATCATTGCTATTGCGATCGCCGCATTGCCTGTAATTTTCTTGTTGAAGCCTCGAGAGCCGATTTTTTCTCTCCAGTCACTGCGATTGGATTGGTACAACA
TTACCGTCACATCTGGCTCTCCAATTCTTTCTTCGGTTTTCACTCTGACTCTCAATTCTCAAAACCCTAACAAAATCGGCATTAAGTACAGTCCGTCGAGGCTTCTCCTG
ATTTACGATGGAACCGCCATGATCGGAACAATTCGAGTGCCTGAAGTGTTTCAGCCCGCTCGTAGCGGCGATCGGAGTGTTCGAACTCGTTTGTTGTTGCATCAATTTAA
TGTGGATTTGTTGGAGACGATGCGAGAGTTTGTTGAGATGAAAATTATCGGCGATGTTGGTGTAGAGCTGTTTGTGCTTCATATGGCGGTGATCAAGATGAAGGTAAGGG
TAATTGTTGTTTGTATTTAA

mRNA sequence

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Protein sequence

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MDVLAISETPISNRFCCEQICTLYTLKRFCLFLLFVALFSIIAIAIAALPVIFLLKPREPIFSLQSLRLDWYNITVTSGSPILSSVFTLTLNSQNPNKIGIKYSPSRLLL
IYDGTAMIGTIRVPEVFQPARSGDRSVRTRLLLHQFNVDLLETMREFVEMKIIGDVGVELFVLHMAVIKMKVRVIVVCI

Lsi02G028650 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome