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Lsi02G028870 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G028870
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionNucleoside diphosphate kinase
Genome locationchr02:35090096..35092931
RNA-Seq ExpressionLsi02G028870
SyntenyLsi02G028870
Gene Ontology termsGO:0006165 - nucleoside diphosphate phosphorylation (biological process)
GO:0006183 - GTP biosynthetic process (biological process)
GO:0006228 - UTP biosynthetic process (biological process)
GO:0006241 - CTP biosynthetic process (biological process)
GO:0004550 - nucleoside diphosphate kinase activity (molecular function)
InterPro domainsIPR001564 - Nucleoside diphosphate kinase
IPR023005 - Nucleoside diphosphate kinase, active site
IPR034907 - Nucleoside diphosphate kinase-like domain
IPR036850 - Nucleoside diphosphate kinase-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575435.1 putative nucleoside diphosphate kinase 5, partial [Cucurbita argyrosperma subsp. sororia]2.3e-3756.04Show/hide
Query:  MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSL--------HTTT-----------------------------CMHSNKNL-------EM
        M IRLVLLGSRFLFFF LV++AFSG+  S G       L  +        +T +                               HS+K+          
Subjt:  MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSL--------HTTT-----------------------------CMHSNKNL-------EM

Query:  LGPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHDEL
         GPVC+MVLEKQNAIADWRA+IGPTDA KAKATHPNSIRAMCGLDS+KNCVHGSDSL SAQREISFFF EETGE+VGKHDEL
Subjt:  LGPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHDEL

XP_008462283.1 PREDICTED: probable nucleoside diphosphate kinase 5 isoform X1 [Cucumis melo]2.4e-3957.69Show/hide
Query:  MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSL-------------------------------------------HTTTCMHSNKNLEML
        MTIRL+LL SRF F FF VAVAFSGV  S G       L  +                                           H++     N    M 
Subjt:  MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSL-------------------------------------------HTTTCMHSNKNLEML

Query:  -GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHDEL
         GPVCIMVLEKQNAIADWRALIGPTD+VKAKATHPNSIRAMCGLDS+KNCVHGSDSLLSAQREISFFFEEETGEMVG HDEL
Subjt:  -GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHDEL

XP_022148787.1 probable nucleoside diphosphate kinase 5 isoform X2 [Momordica charantia]8.4e-4056.59Show/hide
Query:  MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSLHTT-------------------------------------TCMHSNKNL-------EM
        M IRLVL+G RFLFFFFL A+AFSG   S G       L  +                                           HS++N          
Subjt:  MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSLHTT-------------------------------------TCMHSNKNL-------EM

Query:  LGPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHDEL
         GPVCIMVLEKQNAIADWRA+IGPTDA KAKATHPNSIRAMCGLDS+KNCVHGSDSL SAQREISFFFEEETGEMVGKHDEL
Subjt:  LGPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHDEL

XP_038897366.1 probable nucleoside diphosphate kinase 5 isoform X1 [Benincasa hispida]7.1e-3958.24Show/hide
Query:  MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSLHTT-------------------------------------TCMHSNKNL-------EM
        MTIRLV L SRFL FFFLVA A SGV  S G       L  +                                           HS+K+          
Subjt:  MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSLHTT-------------------------------------TCMHSNKNL-------EM

Query:  LGPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHDEL
         GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDS+KNCVHGSDSLLSAQREISFFF EETGEMVGKHDEL
Subjt:  LGPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHDEL

XP_038897367.1 probable nucleoside diphosphate kinase 5 isoform X2 [Benincasa hispida]7.1e-3958.24Show/hide
Query:  MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSLHTT-------------------------------------TCMHSNKNL-------EM
        MTIRLV L SRFL FFFLVA A SGV  S G       L  +                                           HS+K+          
Subjt:  MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSLHTT-------------------------------------TCMHSNKNL-------EM

Query:  LGPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHDEL
         GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDS+KNCVHGSDSLLSAQREISFFF EETGEMVGKHDEL
Subjt:  LGPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHDEL

TrEMBL top hitse value%identityAlignment
A0A0A0K9F4 Nucleoside diphosphate kinase1.1e-3756.04Show/hide
Query:  MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSL-------------------------------------------HTTTCMHSNKNLEML
        M +RLVLL SR  F FFLVA+AFSG   S G       L  +                                           H++     N    M 
Subjt:  MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSL-------------------------------------------HTTTCMHSNKNLEML

Query:  -GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHDEL
         GPVCIMVLEKQNAIA+WRALIGPTD+VKAKATHPNSIRAMCGLDS+KNCVHGSDSLLSAQREISFFFEEETGEMVGKHDEL
Subjt:  -GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHDEL

A0A1S3CGL5 Nucleoside diphosphate kinase1.2e-3957.69Show/hide
Query:  MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSL-------------------------------------------HTTTCMHSNKNLEML
        MTIRL+LL SRF F FF VAVAFSGV  S G       L  +                                           H++     N    M 
Subjt:  MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSL-------------------------------------------HTTTCMHSNKNLEML

Query:  -GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHDEL
         GPVCIMVLEKQNAIADWRALIGPTD+VKAKATHPNSIRAMCGLDS+KNCVHGSDSLLSAQREISFFFEEETGEMVG HDEL
Subjt:  -GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHDEL

A0A6J1D607 Nucleoside diphosphate kinase4.1e-4056.59Show/hide
Query:  MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSLHTT-------------------------------------TCMHSNKNL-------EM
        M IRLVL+G RFLFFFFL A+AFSG   S G       L  +                                           HS++N          
Subjt:  MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSLHTT-------------------------------------TCMHSNKNL-------EM

Query:  LGPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHDEL
         GPVCIMVLEKQNAIADWRA+IGPTDA KAKATHPNSIRAMCGLDS+KNCVHGSDSL SAQREISFFFEEETGEMVGKHDEL
Subjt:  LGPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHDEL

A0A6J1GNH4 Nucleoside diphosphate kinase1.4e-3755.49Show/hide
Query:  MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSLHTT-------------------------------------TCMHSNKNL-------EM
        M IRLVLLGSRFLFFF LV++AFSG+  S G       L  +                                           HS+K+          
Subjt:  MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSLHTT-------------------------------------TCMHSNKNL-------EM

Query:  LGPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHDEL
         GPVC+MVLEKQNAIADWRA+IGPTDA KAKATHPNSIRAMCGLDS+KNCVHGSDSL SAQREISFFF EETGE+VGKHDEL
Subjt:  LGPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHDEL

A0A6J1JTG9 Nucleoside diphosphate kinase4.2e-3754.95Show/hide
Query:  MTIRLVLLGSRFLFFFFLVAVAFSGV--------------------------------LVSGGYPCHLCNLCSLHTTTCM-----HSNKNL-------EM
        M IRLVLLGSRFLFFF LV++AFSG+                                +V  G+      +  L           HS+K+          
Subjt:  MTIRLVLLGSRFLFFFFLVAVAFSGV--------------------------------LVSGGYPCHLCNLCSLHTTTCM-----HSNKNL-------EM

Query:  LGPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHDEL
         GPVC+MVLEKQNAIADWRA+IGPTDA KAKATHPNSIRAMCGLDS+KNCVHGSDSL SA REISFFF EETGE+VGKHDEL
Subjt:  LGPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVGKHDEL

SwissProt top hitse value%identityAlignment
P56597 Nucleoside diphosphate kinase homolog 57.7e-1244.93Show/hide
Query:  GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEE
        GP+  M+L +  AI+ W  L+GP +++ AK THP+S+RA+ G D  +N +HGS+   +A+REI F F E
Subjt:  GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEE

Q6DI51 Nucleoside diphosphate kinase 67.7e-1243.84Show/hide
Query:  GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGE
        GP+   +L +++AI  WR ++GPT   +A+ + P ++R   GL   +N  HGSDS+ SA+REISFFF E + E
Subjt:  GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGE

Q6NLG3 Probable nucleoside diphosphate kinase 51.3e-2465.06Show/hide
Query:  GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVG--KHDEL
        GPV +MVLEK+NA++DWR LIGPTDA KAK +HP+SIRA+CG +SQKNCVHGSDS  SA+REI FFF++     +   +HDEL
Subjt:  GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVG--KHDEL

Q8N427 Thioredoxin domain-containing protein 31.0e-1146.67Show/hide
Query:  LEML--GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEE
        LEML  GP  +M+L K NA+A+WR L+GPTD  +AK   P+SIRA  G+   KN VHG+ +   A+  ++  FE+
Subjt:  LEML--GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEE

Q99MH5 Nucleoside diphosphate kinase homolog 51.3e-1143.28Show/hide
Query:  GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFF
        GP+  M+L +  AI+ W+ L+GP++++ AK THP+S+RA+ G D  +N +HGS+   +++REI F F
Subjt:  GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFF

Arabidopsis top hitse value%identityAlignment
AT1G17410.1 Nucleoside diphosphate kinase family protein9.6e-2665.06Show/hide
Query:  GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVG--KHDEL
        GPV +MVLEK+NA++DWR LIGPTDA KAK +HP+SIRA+CG +SQKNCVHGSDS  SA+REI FFF++     +   +HDEL
Subjt:  GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVG--KHDEL

AT1G17410.2 Nucleoside diphosphate kinase family protein9.6e-2665.06Show/hide
Query:  GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVG--KHDEL
        GPV +MVLEK+NA++DWR LIGPTDA KAK +HP+SIRA+CG +SQKNCVHGSDS  SA+REI FFF++     +   +HDEL
Subjt:  GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEEETGEMVG--KHDEL

AT4G09320.1 Nucleoside diphosphate kinase family protein4.5e-0737.68Show/hide
Query:  GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEE
        GPV  M+ E +N +   R +IG T+     A+ P +IR    +D  +N +HGSDS+ SA++EI+ +F +
Subjt:  GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEE

AT5G63310.1 nucleoside diphosphate kinase 21.7e-0640.58Show/hide
Query:  GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEE
        GPV  M  E    +A  R LIG TD ++A+   P +IR    + + +N VHGSDS  + +REI  +F+E
Subjt:  GPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGSDSLLSAQREISFFFEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGATCCGTTTGGTTTTGCTCGGTTCGCGGTTTCTCTTTTTCTTCTTCCTTGTCGCTGTCGCATTTTCTGGCGTCCTAGTAAGTGGTGGATATCCTTGTCACTTATG
CAATTTATGCAGCCTTCACACCACCACCTGCATGCACTCAAACAAAAATTTGGAAATGCTTGGCCCAGTATGCATTATGGTTTTGGAGAAACAGAATGCAATCGCAGATT
GGCGTGCTCTGATTGGACCAACAGATGCAGTGAAAGCTAAGGCTACGCATCCTAATAGCATTAGGGCAATGTGTGGGTTGGATTCGCAGAAAAATTGTGTTCATGGTTCA
GATTCTCTTCTATCAGCTCAAAGAGAGATCTCATTTTTCTTTGAAGAAGAAACTGGTGAAATGGTTGGAAAACATGATGAATTATAA
mRNA sequenceShow/hide mRNA sequence
TTCGGCTTCGCGTCAATTCCCAGTTAGCGAGATATTCTTCCTCTCTCTCACTCTATATATACAAAATACAATACGACGCCCGCGCCCTTCGTTTCGTAGAGCTTTCTACT
TTCCCGCCAATATACTGTTCTGCAACTGCAAGTACTCGAGTTTCTATCATCTTTCTTGCGGTTGCTGCTTCTCATTCTCGACTCCACTAATCGCAGTTTCGCTCAGCAAA
TGACGATCCGTTTGGTTTTGCTCGGTTCGCGGTTTCTCTTTTTCTTCTTCCTTGTCGCTGTCGCATTTTCTGGCGTCCTAGTAAGTGGTGGATATCCTTGTCACTTATGC
AATTTATGCAGCCTTCACACCACCACCTGCATGCACTCAAACAAAAATTTGGAAATGCTTGGCCCAGTATGCATTATGGTTTTGGAGAAACAGAATGCAATCGCAGATTG
GCGTGCTCTGATTGGACCAACAGATGCAGTGAAAGCTAAGGCTACGCATCCTAATAGCATTAGGGCAATGTGTGGGTTGGATTCGCAGAAAAATTGTGTTCATGGTTCAG
ATTCTCTTCTATCAGCTCAAAGAGAGATCTCATTTTTCTTTGAAGAAGAAACTGGTGAAATGGTTGGAAAACATGATGAATTATAA
Protein sequenceShow/hide protein sequence
MTIRLVLLGSRFLFFFFLVAVAFSGVLVSGGYPCHLCNLCSLHTTTCMHSNKNLEMLGPVCIMVLEKQNAIADWRALIGPTDAVKAKATHPNSIRAMCGLDSQKNCVHGS
DSLLSAQREISFFFEEETGEMVGKHDEL