CuGenDBv2

Gene ID	Lsi02G029170
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA-directed RNA polymerase I subunit rpa49
Genome location	chr02:35409753..35412633
RNA-Seq Expression	Lsi02G029170
Synteny	Lsi02G029170
Gene Ontology terms	GO:0001188 - RNA polymerase I preinitiation complex assembly (biological process) GO:0006362 - transcription elongation from RNA polymerase I promoter (biological process) GO:0042790 - nucleolar large rRNA transcription by RNA polymerase I (biological process) GO:0005736 - RNA polymerase I complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR009668 - RNA polymerase I associated factor, A49-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0059416.1 DNA-directed RNA polymerase I subunit rpa49 [Cucumis melo var. makuwa]

2.9e-142

86.26

Show/hide

Query:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL
        M EDTKSLELEENHNAEPDANSQSPA KKKKSEK+KKRV S+NAKIQVLSN PQK PP+VGYFPSGFDPHKDAD+   E+ +SVRARVYKH+NKPNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQ LKIVPIASNMI RLDPKVRGSDVSENESPSVANEELS+QEKA+R+RELT LYGTK+SK Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ

Query:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KLHALKQEDDP+TKNDLD RMKNVVVNKEAL GT AEIARNIP YNASATTPQE YPLDKIILKGEWSFLEDLYFRL+ETAEI+A YPSFVRNRIYKL
Subjt:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QNIQVRCQEGSAC
        Q+IQ   ++   C
Subjt:  QNIQVRCQEGSAC

XP_008462335.1 PREDICTED: DNA-directed RNA polymerase I subunit rpa49 [Cucumis melo]

8.3e-142

85.94

Show/hide

Query:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL
        M EDTKSLE EENHNAEPDANSQSPA KKKKSEK+KKRV S+NAKIQVLSN PQK PP+VGYFPSGFDPHKDAD+   E+ +SVRARVYKH+NKPNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQ LKIVPIASNMI RLDPKVRGSDVSENESPSVANEELS+QEKA+R+RELT LYGTK+SK Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ

Query:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KLHALKQEDDP+TKNDLD RMKNVVVNKEAL GT AEIARNIP YNASATTPQE YPLDKIILKGEWSFLEDLYFRL+ETAEI+A YPSFVRNRIYKL
Subjt:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QNIQVRCQEGSAC
        Q+IQ   ++   C
Subjt:  QNIQVRCQEGSAC

XP_022992259.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita maxima]

3.9e-139

81.48

Show/hide

Query:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL
        M EDTKS ELE+NH +EPDANSQSPA KKKKSEK+KKRVPSVNAKIQVLSNHPQKTPPLV YFPSGFDPHKDA+EEA EEQ+SVRARVY+HKNKPNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQ LKIVPIASNMIFRLDP++RGSDVSE ES SV NEELSVQEKA+++RELTNLYGTK+S  Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ

Query:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KLH+LKQEDDPDTK DLD +MKNVVVNKEAL  T A+IARNIPTYN SATTP+EAYPLDKIILKGEWSFLED+Y  LQE AEISA YPSFVRNRIYKL
Subjt:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QNIQVRCQEGSACNYLYEYSEIKH
        Q++Q   ++   C+    +S I H
Subjt:  QNIQVRCQEGSACNYLYEYSEIKH

XP_023547949.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita pepo subsp. pepo]

1.9e-138

80.86

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Query:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL
        M EDTKS ELE+NH +EPD+N QSPA KKKKSEK+KKRVPSVNAKIQVLSNHPQKTPPLV YFPSGFDPHKD +EEA EEQ+SVRARVY+HKNKPNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQ LKIVPIASNMIFRLDP++RGSDVSE ESPSV NEELSVQEKA+++RELTNLYGTK+S  Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ

Query:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KLH+LKQEDDPDTK DLD +MKNVVVNKEAL  T A+IARNIPTYN SATTP+EAYPLDKIILKGEWS+LEDLY  LQE AEISA YPSFVRNRIYKL
Subjt:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QNIQVRCQEGSACNYLYEYSEIKH
        Q++Q   ++   C+    +S I H
Subjt:  QNIQVRCQEGSACNYLYEYSEIKH

XP_038896156.1 DNA-directed RNA polymerase I subunit rpa49 [Benincasa hispida]

4.3e-146

88.82

Show/hide

Query:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL
        M EDTKSLELEENH AE D NS+SPA KKKKSEK+KKRVPSVNAKIQVL NHPQKTPP+VGYFPSGFDPHKDAD    EEQNSVRARVYKHKNKPNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQ LKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADR+RELT LYGTK+SK Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ

Query:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KLHALKQEDDPDTK DLDVRMKNVVVN EAL GT AEIARNIPTYNASATTPQEAYPLDKIILKGEW+FLEDLYFRLQETAEISANYP FVR+RIYKL
Subjt:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QNIQVRCQEGSAC
        Q+IQ   ++   C
Subjt:  QNIQVRCQEGSAC

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KCN4 Uncharacterized protein

1.5e-136

83.71

Show/hide

Query:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL
        M +DTKS+ELEENH     A+SQSPA KKKKSEK+KKRV S++AKIQVLSN PQKTPP+VGYFPSGFDPHKDAD+   E+  SVRARVYKHKN+PNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQ LKIVPIASNMIFRLDPKVRGSDV+ENESPSVANEELS Q+KA+R+RELT LYGTK+SK Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ

Query:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KLHALKQEDDP+TK+DLD RMKNVVVNKEAL GT AE+ARNIP YNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISA YPSFVRNRIYKL
Subjt:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QNIQVRCQEGSAC
        Q+IQ   ++   C
Subjt:  QNIQVRCQEGSAC

A0A1S3CH93 DNA-directed RNA polymerase I subunit rpa49

4.0e-142

85.94

Show/hide

Query:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL
        M EDTKSLE EENHNAEPDANSQSPA KKKKSEK+KKRV S+NAKIQVLSN PQK PP+VGYFPSGFDPHKDAD+   E+ +SVRARVYKH+NKPNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQ LKIVPIASNMI RLDPKVRGSDVSENESPSVANEELS+QEKA+R+RELT LYGTK+SK Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ

Query:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KLHALKQEDDP+TKNDLD RMKNVVVNKEAL GT AEIARNIP YNASATTPQE YPLDKIILKGEWSFLEDLYFRL+ETAEI+A YPSFVRNRIYKL
Subjt:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QNIQVRCQEGSAC
        Q+IQ   ++   C
Subjt:  QNIQVRCQEGSAC

A0A5D3BXN3 DNA-directed RNA polymerase I subunit rpa49

1.4e-142

86.26

Show/hide

Query:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL
        M EDTKSLELEENHNAEPDANSQSPA KKKKSEK+KKRV S+NAKIQVLSN PQK PP+VGYFPSGFDPHKDAD+   E+ +SVRARVYKH+NKPNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQ LKIVPIASNMI RLDPKVRGSDVSENESPSVANEELS+QEKA+R+RELT LYGTK+SK Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ

Query:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KLHALKQEDDP+TKNDLD RMKNVVVNKEAL GT AEIARNIP YNASATTPQE YPLDKIILKGEWSFLEDLYFRL+ETAEI+A YPSFVRNRIYKL
Subjt:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QNIQVRCQEGSAC
        Q+IQ   ++   C
Subjt:  QNIQVRCQEGSAC

A0A6J1GQS4 DNA-directed RNA polymerase I subunit rpa49-like

7.8e-138

80.56

Show/hide

Query:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL
        M EDTKS ELE+NH +EPD+N QSPA KKKKSEK+KKRVPSVNAKIQVLSNHPQKTPPLV YFPSGFDPHKD +EEA EEQ+SVRARVY+HKNKPNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQ LKIVPIASNMIFRLDP++RGSDVSE ESPSV NEELSVQEKA+++RELTNLYGTK+S  Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ

Query:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KL +LKQEDDPDTK DLD +MKNVVVNKEAL  T A+IARNIPTYN SATTP+EAYPLDKIILKGEWS+LEDLY  LQE AEISA YPSFVRNRIYKL
Subjt:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QNIQVRCQEGSACNYLYEYSEIKH
        Q++Q   ++   C+    +S I H
Subjt:  QNIQVRCQEGSACNYLYEYSEIKH

A0A6J1JX25 DNA-directed RNA polymerase I subunit rpa49-like

1.9e-139

81.48

Show/hide

Query:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL
        M EDTKS ELE+NH +EPDANSQSPA KKKKSEK+KKRVPSVNAKIQVLSNHPQKTPPLV YFPSGFDPHKDA+EEA EEQ+SVRARVY+HKNKPNRMQL
Subjt:  MTEDTKSLELEENHNAEPDANSQSPA-KKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQ LKIVPIASNMIFRLDP++RGSDVSE ES SV NEELSVQEKA+++RELTNLYGTK+S  Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQ

Query:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL
        A KLH+LKQEDDPDTK DLD +MKNVVVNKEAL  T A+IARNIPTYN SATTP+EAYPLDKIILKGEWSFLED+Y  LQE AEISA YPSFVRNRIYKL
Subjt:  AMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKL

Query:  QNIQVRCQEGSACNYLYEYSEIKH
        Q++Q   ++   C+    +S I H
Subjt:  QNIQVRCQEGSACNYLYEYSEIKH

SwissProt top hits

e value

%identity

Alignment

Q54FE8 DNA-directed RNA polymerase I subunit rpa49

3.8e-04

22.83

Show/hide

Query:  QHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTK--RSKTQAMKLHALKQEDDPDTKNDLDVR
        ++  YA+G+ DK T+ LKIVP     I  ++  V G  ++ + S  ++ E     E+ D+I++L + +G+K  + K Q M++  ++  D   T   +D  
Subjt:  QHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTK--RSKTQAMKLHALKQEDDPDTKNDLDVR

Query:  MKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFR--LQETAEISANYPSFVRNRIYKLQNIQ
        +KN + + E+      E   ++P ++A     ++ Y ++ I+    +  L    F   + +T+E  +  P + ++++ + ++I+
Subjt:  MKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFR--LQETAEISANYPSFVRNRIYKLQNIQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G13940.1 DNA binding;DNA-directed RNA polymerases

1.9e-51

38.92

Show/hide

Query:  ELEENHNAEPDANSQSPAKKK---------KSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHK-NKPNRMQ
        E  +  N E D N+    +KK         ++E   +    V  K+  ++  P +  P+V YF +G+DP K   +       + +  VYKHK +   R+Q
Subjt:  ELEENHNAEPDANSQSPAKKK---------KSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHK-NKPNRMQ

Query:  LVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENE-SPSVANEELSVQEKADRIRELTNLYGTKRSK
        +VVSP G+ V+FVGTNY GE  A  Q  TY +GV ++  + L+I+P+A N I RL+P+V+  + +E E S S   +EL   +  +R R     Y TK++ 
Subjt:  LVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENE-SPSVANEELSVQEKADRIRELTNLYGTKRSK

Query:  TQAMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISAN-YPSFVRNRI
        T+  K  AL   DD  T+  LD ++  + VN  AL GT + +ARNIP YN +ATT  EAYPL+KII KG+WSFLED+Y+ LQ+  E +   YP FVRNR+
Subjt:  TQAMKLHALKQEDDPDTKNDLDVRMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISAN-YPSFVRNRI

Query:  YKLQNIQVRCQEGSAC
        Y+L++I+   ++ + C
Subjt:  YKLQNIQVRCQEGSAC

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGACGGAAGACACGAAATCTCTTGAATTAGAAGAAAACCATAACGCAGAACCAGACGCAAACTCACAGTCTCCAGCGAAGAAGAAGAAGAGTGAAAAAAGGAAGAAGCG
AGTTCCATCAGTGAATGCTAAAATCCAAGTTCTCAGCAACCATCCCCAGAAAACTCCGCCGTTAGTGGGTTATTTCCCGTCTGGGTTTGATCCTCACAAGGATGCCGACG
AGGAAGCAGCCGAGGAACAGAATTCCGTTAGGGCTAGGGTTTATAAGCACAAGAACAAACCAAATAGGATGCAGCTGGTTGTGAGTCCAACAGGGTCGAATGTGGATTTT
GTTGGTACCAATTATTTGGGCGAGGCTACAGCTGGGAAACAGCATTGCACCTATGCTCTCGGTGTTCTTGATAAGGCCACCCAAATCTTAAAGATAGTGCCTATTGCATC
AAATATGATATTTAGATTAGACCCAAAAGTCAGAGGTTCAGACGTTTCTGAAAATGAATCCCCAAGTGTGGCAAATGAAGAGCTTTCTGTGCAGGAGAAAGCTGATAGAA
TAAGAGAGCTCACCAATCTCTATGGAACAAAGAGGTCAAAAACGCAGGCAATGAAGCTGCATGCATTGAAGCAAGAGGATGATCCTGATACCAAGAATGATCTAGATGTG
AGAATGAAAAATGTAGTGGTAAACAAAGAGGCCTTGGGAGGTACGCATGCAGAAATTGCTCGTAATATACCAACATATAATGCTTCTGCAACTACTCCACAAGAAGCTTA
CCCACTCGACAAGATTATCCTCAAGGGAGAATGGAGTTTTCTGGAAGATCTCTACTTTCGTTTGCAAGAAACAGCTGAAATAAGTGCTAATTATCCATCCTTTGTCCGCA
ACAGAATTTATAAATTGCAAAACATTCAGGTACGGTGTCAAGAAGGTTCTGCTTGTAATTACCTTTATGAATATTCTGAGATAAAACATTCTTCCTTTCTGATACATATT
CATGAATCATGTGGATGA

mRNA sequence

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Protein sequence

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MTEDTKSLELEENHNAEPDANSQSPAKKKKSEKRKKRVPSVNAKIQVLSNHPQKTPPLVGYFPSGFDPHKDADEEAAEEQNSVRARVYKHKNKPNRMQLVVSPTGSNVDF
VGTNYLGEATAGKQHCTYALGVLDKATQILKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKADRIRELTNLYGTKRSKTQAMKLHALKQEDDPDTKNDLDV
RMKNVVVNKEALGGTHAEIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISANYPSFVRNRIYKLQNIQVRCQEGSACNYLYEYSEIKHSSFLIHI
HESCG

Lsi02G029170 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome