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Lsi02G029310 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G029310
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTransmembrane protein, putative
Genome locationchr02:35501473..35505066
RNA-Seq ExpressionLsi02G029310
SyntenyLsi02G029310
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059427.1 hypothetical protein E6C27_scaffold242G001540 [Cucumis melo var. makuwa]3.7e-2098.48Show/hide
Query:  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDDSKHSPK
        MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAG+KQDQKDDSKHSPK
Subjt:  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDDSKHSPK

KAE8646513.1 hypothetical protein Csa_016818 [Cucumis sativus]3.7e-2098.48Show/hide
Query:  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDDSKHSPK
        MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAG+KQDQKDDSKHSPK
Subjt:  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDDSKHSPK

KAG6575471.1 hypothetical protein SDJN03_26110, partial [Cucurbita argyrosperma subsp. sororia]6.7e-2293.06Show/hide
Query:  KPKTKNMAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDDSKHSPK
        KPK  NMA+KPTVALRAVLVGGIAAFAKIAGAMKAAGG KLGAATAAMTAAATAALAGSKQDQKDDSKH PK
Subjt:  KPKTKNMAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDDSKHSPK

KAG6593524.1 hypothetical protein SDJN03_13000, partial [Cucurbita argyrosperma subsp. sororia]1.7e-2086.05Show/hide
Query:  IPLRIVTVQTADKPKTKNMAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALA-GSKQDQKDDSK-HSPK
        IP    TVQTAD  K KNMAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAK+GAATAAMTAAATAALA GSKQ+QKDDSK HSP+
Subjt:  IPLRIVTVQTADKPKTKNMAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALA-GSKQDQKDDSK-HSPK

KAG7014012.1 hypothetical protein SDJN02_24183, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-2487.36Show/hide
Query:  CIPLRIVTVQTAD--KPKTKNMAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDDSKHSPK
        C P +IVTVQTA+  KPK  NMA+KPTVALRAVLVGGIAAFAKIAGAMKAAGG KLGAATAAMTAAATAALAGSKQDQKDDSKH PK
Subjt:  CIPLRIVTVQTAD--KPKTKNMAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDDSKHSPK

TrEMBL top hitse value%identityAlignment
A0A5A7UXR8 Uncharacterized protein1.8e-2098.48Show/hide
Query:  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDDSKHSPK
        MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAG+KQDQKDDSKHSPK
Subjt:  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDDSKHSPK

A0A6J1CPT9 uncharacterized protein LOC1110136201.2e-1996.97Show/hide
Query:  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDDSKHSPK
        M VKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDDSKH PK
Subjt:  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDDSKHSPK

A0A6J1GSG6 uncharacterized protein LOC1114565691.2e-1995.45Show/hide
Query:  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDDSKHSPK
        MA+KPTVALRAVLVGGIAAFAKIAGAMKAAGG KLGAATAAMTAAATAALAGSKQDQKDDSKH PK
Subjt:  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDDSKHSPK

A0A6J1JXL7 uncharacterized protein LOC1114887608.9e-2096.97Show/hide
Query:  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDDSKHSPK
        MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGG KLGAATAAMTAAATAALAGSKQDQKDDSKH PK
Subjt:  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDDSKHSPK

E5GCB3 Uncharacterized protein3.0e-2096.97Show/hide
Query:  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDDSKHSPK
        MAVKPTVALRAVLVGGIAAFAK+AGAMKAAGGAKLGAATAAMTAAATAALAG+KQDQKDDSKHSPK
Subjt:  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDDSKHSPK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G13845.1 unknown protein1.4e-1471.21Show/hide
Query:  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALA-GSKQDQKDDSKHSP
        M+VKPTVALR +LVGG+A FAK+A AMKAAGG KLGAA  AMT AATAA++ GSKQDQK D+  +P
Subjt:  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALA-GSKQDQKDDSKHSP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTCATAATGTGCATCCCCCTAAGGATTGTAACTGTTCAAACTGCAGATAAACCCAAAACCAAAAACATGGCAGTAAAACCAACTGTTGCCTTGCGAGCTGTACT
TGTTGGAGGAATTGCAGCGTTTGCTAAAATTGCTGGTGCAATGAAAGCTGCTGGTGGTGCAAAGTTAGGTGCAGCCACAGCTGCCATGACAGCAGCAGCAACTGCAGCTT
TGGCAGGATCAAAACAAGACCAGAAGGATGATTCTAAACACTCTCCAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTCATAATGTGCATCCCCCTAAGGATTGTAACTGTTCAAACTGCAGATAAACCCAAAACCAAAAACATGGCAGTAAAACCAACTGTTGCCTTGCGAGCTGTACT
TGTTGGAGGAATTGCAGCGTTTGCTAAAATTGCTGGTGCAATGAAAGCTGCTGGTGGTGCAAAGTTAGGTGCAGCCACAGCTGCCATGACAGCAGCAGCAACTGCAGCTT
TGGCAGGATCAAAACAAGACCAGAAGGATGATTCTAAACACTCTCCAAAATGA
Protein sequenceShow/hide protein sequence
MAFIMCIPLRIVTVQTADKPKTKNMAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDDSKHSPK