; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G029360 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G029360
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr02:35524095..35525888
RNA-Seq ExpressionLsi02G029360
SyntenyLsi02G029360
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7814140.1 LOB domain-containing protein 22 [Senna tora]2.3e-1537.14Show/hide
Query:  LHSEIRLTLCIFHRCRNRCLLLRRRNARRDSVTMNPKSNLRHLQPSHFHLHFRLHRNLQRQSSFTLHRRLQRIDRLADDLSAAAFHRHLHCRGVPLLVDE
        L S I LTL +  R R R  LL  R +  DSVT +  S+   LQ SH  LH R+  +LQRQS   LH RLQ    +A     AA +R L  R V L V E
Subjt:  LHSEIRLTLCIFHRCRNRCLLLRRRNARRDSVTMNPKSNLRHLQPSHFHLHFRLHRNLQRQSSFTLHRRLQRIDRLADDLSAAAFHRHLHCRGVPLLVDE

Query:  LRERSVAEIDAVRQDGDGNWTVNELDFLVRVYDGGGDGEEDDDGGDDRRQPDTDGA--TAGAAAIMGLRAVRGAGGAIELGFGGRE-------------G
         R+R+VA++D + ++ + +  V          +  GD +E+++  +D  +P+ +G   +A A A++GL  V G+G +IELGFGGRE             G
Subjt:  LRERSVAEIDAVRQDGDGNWTVNELDFLVRVYDGGGDGEEDDDGGDDRRQPDTDGA--TAGAAAIMGLRAVRGAGGAIELGFGGRE-------------G

Query:  RRIGRRINVV
        R +GRR++ +
Subjt:  RRIGRRINVV

KAF7843486.1 protein FAR1-RELATED SEQUENCE 5-like [Senna tora]7.5e-0631.71Show/hide
Query:  QIPSLSSSSQYSNNPFPDLHSEIRLTLCIFHRCRNRCLLLRRRNARRDSVTMNPKSNLRHL-QPSHFHLHFRLHRNLQRQSSFTLHRRLQRIDRLADDLS
        +I  L   S   N+PFP+L     L L +  R R + L   R N  R+S+T NP  NLR L +PSH  LH R   + QR+S+     RLQ   R+     
Subjt:  QIPSLSSSSQYSNNPFPDLHSEIRLTLCIFHRCRNRCLLLRRRNARRDSVTMNPKSNLRHL-QPSHFHLHFRLHRNLQRQSSFTLHRRLQRIDRLADDLS

Query:  AAAFHRHLHC----------RGVPLLVDELRERSVAEIDAVRQDGDGNWTVNELDFLVRVYDGGGDGEE--DDDGGDDRRQPDTDGATAGAAAIMGLRAV
             RH             R +P +++  R+  VA++D V + GD +W V++ D L RVY G  + E   ++ GG D    + +G      A+  +  V
Subjt:  AAAFHRHLHC----------RGVPLLVDELRERSVAEIDAVRQDGDGNWTVNELDFLVRVYDGGGDGEE--DDDGGDDRRQPDTDGATAGAAAIMGLRAV

Query:  RGAGG
         G  G
Subjt:  RGAGG

TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATATAAAAACAACAAACTTCAAATTCCCTCTCTTTCATCATCTTCTCAATATTCAAACAATCCATTTCCAGATCTTCACTCTGAAATCCGCCTTACACTCTGCAT
TTTCCACCGATGCCGCAACCGCTGTCTTCTTCTTCGCCGTCGAAACGCCCGCCGTGATTCCGTCACAATGAACCCTAAGTCCAACCTTCGGCATCTTCAACCATCCCATT
TTCACCTTCACTTTCGTCTCCACCGTAATCTCCAACGGCAATCCAGCTTTACTCTTCATCGCCGCCTTCAACGAATCGACCGGCTCGCCGACGATCTCTCCGCCGCCGCT
TTCCACCGTCACCTTCATTGCCGTGGTGTTCCTCTTCTCGTGGACGAACTCAGGGAACGATCCGTCGCCGAGATCGACGCCGTTCGACAAGACGGCGACGGAAATTGGAC
TGTAAATGAACTTGACTTTCTTGTTAGGGTATACGACGGTGGAGGCGACGGCGAGGAGGATGACGACGGTGGCGATGATCGCCGTCAGCCAGATACAGATGGAGCAACAG
CGGGAGCGGCGGCGATTATGGGGTTGAGGGCGGTAAGAGGGGCGGGAGGCGCCATAGAGTTGGGATTTGGTGGAAGGGAAGGGCGGCGCATTGGCCGTCGGATTAATGTT
GTCGTTGGAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCATATAAAAACAACAAACTTCAAATTCCCTCTCTTTCATCATCTTCTCAATATTCAAACAATCCATTTCCAGATCTTCACTCTGAAATCCGCCTTACACTCTGCAT
TTTCCACCGATGCCGCAACCGCTGTCTTCTTCTTCGCCGTCGAAACGCCCGCCGTGATTCCGTCACAATGAACCCTAAGTCCAACCTTCGGCATCTTCAACCATCCCATT
TTCACCTTCACTTTCGTCTCCACCGTAATCTCCAACGGCAATCCAGCTTTACTCTTCATCGCCGCCTTCAACGAATCGACCGGCTCGCCGACGATCTCTCCGCCGCCGCT
TTCCACCGTCACCTTCATTGCCGTGGTGTTCCTCTTCTCGTGGACGAACTCAGGGAACGATCCGTCGCCGAGATCGACGCCGTTCGACAAGACGGCGACGGAAATTGGAC
TGTAAATGAACTTGACTTTCTTGTTAGGGTATACGACGGTGGAGGCGACGGCGAGGAGGATGACGACGGTGGCGATGATCGCCGTCAGCCAGATACAGATGGAGCAACAG
CGGGAGCGGCGGCGATTATGGGGTTGAGGGCGGTAAGAGGGGCGGGAGGCGCCATAGAGTTGGGATTTGGTGGAAGGGAAGGGCGGCGCATTGGCCGTCGGATTAATGTT
GTCGTTGGAATTTGA
Protein sequenceShow/hide protein sequence
MAYKNNKLQIPSLSSSSQYSNNPFPDLHSEIRLTLCIFHRCRNRCLLLRRRNARRDSVTMNPKSNLRHLQPSHFHLHFRLHRNLQRQSSFTLHRRLQRIDRLADDLSAAA
FHRHLHCRGVPLLVDELRERSVAEIDAVRQDGDGNWTVNELDFLVRVYDGGGDGEEDDDGGDDRRQPDTDGATAGAAAIMGLRAVRGAGGAIELGFGGREGRRIGRRINV
VVGI