; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G029450 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G029450
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRNA-binding (RRM/RBD/RNP motifs) family protein
Genome locationchr02:35592767..35596182
RNA-Seq ExpressionLsi02G029450
SyntenyLsi02G029450
Gene Ontology termsGO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059439.1 protein WHI4 [Cucumis melo var. makuwa]6.6e-13693.13Show/hide
Query:  MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAH PYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDG            + +EAVVTPA+A+SAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
        CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
Subjt:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS

XP_004141677.1 protein WHI4 [Cucumis sativus]8.7e-13693.13Show/hide
Query:  MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAH PYDPYYLYNQPDPTYS+RSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDG            + +EAVVTPANA+SAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
        CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
Subjt:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS

XP_008462363.2 PREDICTED: LOW QUALITY PROTEIN: protein WHI4 [Cucumis melo]2.1e-13492.37Show/hide
Query:  MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAH PYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKK  ANSQETSSDDG            + +EAVVTPA+A+SAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
        CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
Subjt:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS

XP_023513427.1 U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita pepo subsp. pepo]1.2e-12988.93Show/hide
Query:  MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLY+QPD  YSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKK+D+N+QETSS+DG            + +EAVV P N LSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
         KYPGFNVLKLRAKSGMPVAFADFE+IEQASKVMEELQGS+LPSSDRGGMHIEYARSKMRKS
Subjt:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS

XP_038898771.1 protein WHI4 isoform X1 [Benincasa hispida]7.8e-13793.89Show/hide
Query:  MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDG            +  EA+VTPANALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
        CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
Subjt:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS

TrEMBL top hitse value%identityAlignment
A0A0A0K772 Uncharacterized protein4.2e-13693.13Show/hide
Query:  MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAH PYDPYYLYNQPDPTYS+RSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDG            + +EAVVTPANA+SAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
        CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
Subjt:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS

A0A1S3CHB2 LOW QUALITY PROTEIN: protein WHI41.0e-13492.37Show/hide
Query:  MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAH PYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKK  ANSQETSSDDG            + +EAVVTPA+A+SAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
        CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
Subjt:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS

A0A5A7V0X3 Protein WHI43.2e-13693.13Show/hide
Query:  MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAH PYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDG            + +EAVVTPA+A+SAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
        CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
Subjt:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS

A0A6J1D4Z1 uncharacterized protein LOC111017052 isoform X22.2e-12989.27Show/hide
Query:  MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLY+QPDP YSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDG-----------EISEAVVTPANALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVLC
        ELARSNSRRKHKPGGGAYVVIDKRKK+D N+QETSSDDG           E SEAV+TP+NALS PYEHHEK DGG CSTLFIANLGPNCNEDEL EVL 
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDG-----------EISEAVVTPANALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVLC

Query:  KYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
        KYPGFNVLKLRAKSGMPVAFADFE++EQA KVMEELQGS+LPSSDRGGMHIEYARSKMRKS
Subjt:  KYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS

A0A6J1HI97 protein WHI41.3e-12988.55Show/hide
Query:  MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLY+QPD  YSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
        ELARSNSRRKHKPGGGAYVVIDKRKK+D+N+QETSS+DG            + +EAVV P N LSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDG------------EISEAVVTPANALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL

Query:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
         KYPGFNVLKLRAKSGMPVAFADFE+IEQASKV+EELQGS+LPSSDRGGMHIEYARSKMRKS
Subjt:  CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS

SwissProt top hitse value%identityAlignment
Q6DH13 RNA-binding protein, mRNA-processing factor 2a4.3e-1338.54Show/hide
Query:  NQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        ++ + + S    + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF +   A  A +ALNG++FDP+S   L +E A++N++
Subjt:  NQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q93062 RNA-binding protein with multiple splicing2.1e-1237.5Show/hide
Query:  NQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        N P         + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F +F +   A  A +ALNG++FDP+    L +E A++N++
Subjt:  NQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q9W6I1 RNA-binding protein with multiple splicing 21.3e-1241.67Show/hide
Query:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF +   A  A +ALNG++FDP++   L +E A++N++
Subjt:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q9WVB0 RNA-binding protein with multiple splicing2.1e-1237.5Show/hide
Query:  NQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        N P         + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F +F +   A  A +ALNG++FDP+    L +E A++N++
Subjt:  NQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q9YGP5 RNA-binding protein with multiple splicing 23.3e-1342.86Show/hide
Query:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF N   A  A +ALNG++FDP++   L +E A++N++
Subjt:  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Arabidopsis top hitse value%identityAlignment
AT2G42240.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.6e-4039.08Show/hide
Query:  AHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE
        AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+
Subjt:  AHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE

Query:  LARSNSRRKHKPGGGAYVVIDKRKKTDANSQE---TSSDDGEISEAVVT----PAN-------ALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEV
        LA+SN + K       +  + K K  +  ++    +    G  S A  T    PA        A  AP          PC TLFIAN+GPNC E EL +V
Subjt:  LARSNSRRKHKPGGGAYVVIDKRKKTDANSQE---TSSDDGEISEAVVT----PAN-------ALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEV

Query:  LCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGG-MHIEYARSKM
          +  GF  LK++   G PVAF DF+D+  +S+ +  LQG+VL SS  G  + ++YARS+M
Subjt:  LCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGG-MHIEYARSKM

AT2G42240.2 RNA-binding (RRM/RBD/RNP motifs) family protein8.9e-3838.96Show/hide
Query:  AHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE
        AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+
Subjt:  AHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE

Query:  LARSNSRRKHKPGGGAYVVIDKRKKTDANSQE---TSSDDGEISEAVVT----PAN-------ALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEV
        LA+SN + K       +  + K K  +  ++    +    G  S A  T    PA        A  AP          PC TLFIAN+GPNC E EL +V
Subjt:  LARSNSRRKHKPGGGAYVVIDKRKKTDANSQE---TSSDDGEISEAVVT----PAN-------ALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEV

Query:  LCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRG
          +  GF  LK++   G PVAF DF+D+  +S+ +  LQG+VL SS  G
Subjt:  LCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRG

AT2G42240.3 RNA-binding (RRM/RBD/RNP motifs) family protein1.4e-3838.55Show/hide
Query:  AHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE
        AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+
Subjt:  AHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE

Query:  LARSNSRRKHKPGGGAYVVIDKRKKTDANSQE---TSSDDGEISEAVVT----PAN-------ALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEV
        LA+SN + K       +  + K K  +  ++    +    G  S A  T    PA        A  AP          PC TLFIAN+GPNC E EL +V
Subjt:  LARSNSRRKHKPGGGAYVVIDKRKKTDANSQE---TSSDDGEISEAVVT----PAN-------ALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEV

Query:  LCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRK
          +  GF  LK++   G PVAF DF+D+  +S+ +  LQG+VL SS  G +    +R  MRK
Subjt:  LCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRK

AT3G13700.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.5e-7754.95Show/hide
Query:  HQPYDPYYLY---NQPD------PTYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQ------------------VVAFATFYN
        HQPYDP+Y+Y   + P       P  +D    INTLF+SGLP+DVKAREIHNLFRRR GF+SCQLKYTGRG+Q                  VVAFATF +
Subjt:  HQPYDPYYLY---NQPD------PTYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQ------------------VVAFATFYN

Query:  HQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGEI---------------------SEAVVTPANALS
        H+ A+ A++ LNGVKFDPQ+GS LHIELARSNSRRK +PG G YVVID R K  + SQ+  SD+G+                      SEA   P +   
Subjt:  HQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGEI---------------------SEAVVTPANALS

Query:  APYEHHEK-NDGG----PCSTLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIE
        +   H EK ++GG     CSTLFIANLGPNC EDELK++L +YPGF++LK+RA+ GMPVAFADFE+IEQA+  M  LQG++L SSDRGGMHIE
Subjt:  APYEHHEK-NDGG----PCSTLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIE

AT3G13700.2 RNA-binding (RRM/RBD/RNP motifs) family protein2.0e-8559.72Show/hide
Query:  HQPYDPYYLY---NQPD------PTYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDP
        HQPYDP+Y+Y   + P       P  +D    INTLF+SGLP+DVKAREIHNLFRRR GF+SCQLKYTGRG+QVVAFATF +H+ A+ A++ LNGVKFDP
Subjt:  HQPYDPYYLY---NQPD------PTYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDP

Query:  QSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGEI---------------------SEAVVTPANALSAPYEHHEK-NDGG----P
        Q+GS LHIELARSNSRRK +PG G YVVID R K  + SQ+  SD+G+                      SEA   P +   +   H EK ++GG     
Subjt:  QSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGEI---------------------SEAVVTPANALSAPYEHHEK-NDGG----P

Query:  CSTLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRK
        CSTLFIANLGPNC EDELK++L +YPGF++LK+RA+ GMPVAFADFE+IEQA+  M  LQG++L SSDRGGMHIEYARSKMRK
Subjt:  CSTLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCACCAGCCGTACGATCCTTACTATCTCTATAATCAACCGGACCCGACCTACAGTGACCGGAGCAACATCAACACGCTCTTCATCTCCGGTCTCCCTGACGACGT
CAAGGCTCGCGAGATTCACAACCTCTTCCGCCGTAGGCCAGGATTCGACTCTTGCCAGCTCAAGTACACTGGACGCGGCAACCAGGTTGTGGCATTTGCCACCTTTTACA
ATCACCAATCAGCTGTGACAGCGCTTCATGCATTAAATGGTGTCAAATTTGATCCACAAAGTGGATCAGTTCTGCATATTGAACTTGCTAGGTCAAACTCTAGGAGAAAA
CATAAGCCAGGTGGTGGAGCATATGTTGTGATAGATAAAAGGAAAAAAACAGATGCCAATTCCCAGGAAACATCAAGTGATGATGGTGAAATCAGCGAGGCTGTGGTGAC
TCCTGCTAATGCTCTATCTGCTCCATATGAGCATCATGAAAAGAATGATGGAGGACCATGCTCCACTTTGTTTATCGCGAATCTGGGTCCAAACTGCAATGAAGATGAAC
TGAAGGAAGTCTTGTGCAAATATCCTGGATTCAACGTTCTCAAATTGCGTGCCAAAAGTGGAATGCCGGTTGCATTTGCTGATTTTGAGGACATTGAACAGGCTAGTAAG
GTTATGGAGGAGCTTCAGGGCAGCGTGTTACCATCATCAGACCGCGGCGGCATGCATATAGAGTATGCTCGGTCTAAAATGAGGAAGTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTCACCAGCCGTACGATCCTTACTATCTCTATAATCAACCGGACCCGACCTACAGTGACCGGAGCAACATCAACACGCTCTTCATCTCCGGTCTCCCTGACGACGT
CAAGGCTCGCGAGATTCACAACCTCTTCCGCCGTAGGCCAGGATTCGACTCTTGCCAGCTCAAGTACACTGGACGCGGCAACCAGGTTGTGGCATTTGCCACCTTTTACA
ATCACCAATCAGCTGTGACAGCGCTTCATGCATTAAATGGTGTCAAATTTGATCCACAAAGTGGATCAGTTCTGCATATTGAACTTGCTAGGTCAAACTCTAGGAGAAAA
CATAAGCCAGGTGGTGGAGCATATGTTGTGATAGATAAAAGGAAAAAAACAGATGCCAATTCCCAGGAAACATCAAGTGATGATGGTGAAATCAGCGAGGCTGTGGTGAC
TCCTGCTAATGCTCTATCTGCTCCATATGAGCATCATGAAAAGAATGATGGAGGACCATGCTCCACTTTGTTTATCGCGAATCTGGGTCCAAACTGCAATGAAGATGAAC
TGAAGGAAGTCTTGTGCAAATATCCTGGATTCAACGTTCTCAAATTGCGTGCCAAAAGTGGAATGCCGGTTGCATTTGCTGATTTTGAGGACATTGAACAGGCTAGTAAG
GTTATGGAGGAGCTTCAGGGCAGCGTGTTACCATCATCAGACCGCGGCGGCATGCATATAGAGTATGCTCGGTCTAAAATGAGGAAGTCTTAG
Protein sequenceShow/hide protein sequence
MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRK
HKPGGGAYVVIDKRKKTDANSQETSSDDGEISEAVVTPANALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASK
VMEELQGSVLPSSDRGGMHIEYARSKMRKS