CuGenDBv2

Gene ID	Lsi02G030020
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Nuclear pore complex protein NUP35
Genome location	chr02:36100867..36103506
RNA-Seq Expression	Lsi02G030020
Synteny	Lsi02G030020
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006607 - NLS-bearing protein import into nucleus (biological process) GO:0006999 - nuclear pore organization (biological process) GO:0051028 - mRNA transport (biological process) GO:0031965 - nuclear membrane (cellular component) GO:0044613 - nuclear pore central transport channel (cellular component) GO:0044615 - nuclear pore nuclear basket (cellular component) GO:0003697 - single-stranded DNA binding (molecular function) GO:0005543 - phospholipid binding (molecular function) GO:0017056 - structural constituent of nuclear pore (molecular function)
InterPro domains	IPR007846 - RNA-recognition motif (RRM) Nup35-type domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR017389 - Nucleoporin, NUP53 IPR035979 - RNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0051033.1 nuclear pore complex protein NUP35 [Cucumis melo var. makuwa]

8.6e-157

88.38

Show/hide

Query:  TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMK
        TVHRTPNSG +SLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRS SDFSPESGIPDYPVSPE KSDPRTPI+ HDFSS  K
Subjt:  TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMK

Query:  NKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNLVLR
        NKSNASTSYTPI+GQ SRQGSAGFSWWSTSKGGGSE+EDKGKSSPVEGVIQPGALITLPTPREVARPEV+RNCLP AKLNEEEW+TVYGFSPADTNLVLR
Subjt:  NKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNLVLR

Query:  EFEKCGEILKH---------------NRSDAHRALNKNGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG
        EFEKCGEILKH               NRSDA +ALNKNGIQINGVLIVGVKPVD MHRQALDEKLNNPGFMV PPVSSRTSELLA RGP RPYSLQNGN 
Subjt:  EFEKCGEILKH---------------NRSDAHRALNKNGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG

Query:  SARQSGGTIASPSKSLVSKVMDLMFGV
        SAR SGG IASPSKSLVSKVMDLMFGV
Subjt:  SARQSGGTIASPSKSLVSKVMDLMFGV

XP_004141656.1 nuclear pore complex protein NUP35 [Cucumis sativus]

1.5e-156

88.38

Show/hide

Query:  TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMK
        TVHRTPNSG +SLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRS SDFSPESGIPDYPVSPE KSDPRTPI+ HDFSS  K
Subjt:  TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMK

Query:  NKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNLVLR
        NKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLP AKLNEEEW+TVYGFSPADTNLVLR
Subjt:  NKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNLVLR

Query:  EFEKCGEILKH---------------NRSDAHRALNKNGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG
        EFEKCGEILKH               NRSDA +ALNKNGIQINGVLIVGVKPVD MHRQAL+E+LNNPGFMV PPVSSRTSELLA RGP RPY+LQNG  
Subjt:  EFEKCGEILKH---------------NRSDAHRALNKNGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG

Query:  SARQSGGTIASPSKSLVSKVMDLMFGV
        SAR SGG IASPSKSLVSKVMDLMFGV
Subjt:  SARQSGGTIASPSKSLVSKVMDLMFGV

XP_008462444.1 PREDICTED: nuclear pore complex protein NUP35 [Cucumis melo]

5.5e-156

88.07

Show/hide

Query:  TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMK
        TVHRTPNSG +SLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRS SDFSPESGIPDYPVSPE KSDPRTPI+ HDFSS  K
Subjt:  TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMK

Query:  NKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNLVLR
        NKSNASTSYTPI+GQ SRQGSAGFSWWSTSKGGGSE+EDKGKSSPVEGVIQPGALITLPTPREVARPEV+RNCLP AKLNEEEW+TVYGFSPADTNLVLR
Subjt:  NKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNLVLR

Query:  EFEKCGEILKH---------------NRSDAHRALNKNGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG
        EFEKCGEILKH               NRSDA +ALNKNGIQINGVLIVGVKPVD MHRQALDEKLNNPGFMV PPVSSRTSELLA RGP  PYSLQNGN 
Subjt:  EFEKCGEILKH---------------NRSDAHRALNKNGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG

Query:  SARQSGGTIASPSKSLVSKVMDLMFGV
        SAR SGG IASPSKSLVSKVMDLMFGV
Subjt:  SARQSGGTIASPSKSLVSKVMDLMFGV

XP_022151212.1 nuclear pore complex protein NUP35 [Momordica charantia]

2.5e-156

87.16

Show/hide

Query:  TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMK
        T+HRTPNSGRQS+FYQDLASPVT+RKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDR  SDFSPESGIPDYP+SPEIKSDPRTPIQSHDFSS MK
Subjt:  TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMK

Query:  NKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNLVLR
        NKSNASTSYTP SGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEG +QPGALI LPTPREVARPEVQRNC PA KLNEEEW+TVYGFSPADTNLVLR
Subjt:  NKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNLVLR

Query:  EFEKCGEILKH---------------NRSDAHRALNKNGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG
        EFEKCGEILKH               NRSDAH+ALNKNG+QINGVLIVGVKPVD MHRQALDEK+NNPGFMV PPV SRT+ELLA RGP R Y+LQNGN 
Subjt:  EFEKCGEILKH---------------NRSDAHRALNKNGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG

Query:  SARQSGGTIASPSKSLVSKVMDLMFGV
        +ARQSGGTIASPSKSLVSKVMDLMFGV
Subjt:  SARQSGGTIASPSKSLVSKVMDLMFGV

XP_038900103.1 nuclear pore complex protein NUP35 [Benincasa hispida]

9.4e-164

91.82

Show/hide

Query:  MNT-VHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSS
        MNT VHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGI DYPVSPEIKSDPRTPIQSHDFSS
Subjt:  MNT-VHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSS

Query:  SMKNKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNL
         +KNKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEW+TVYGFSPADTNL
Subjt:  SMKNKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNL

Query:  VLREFEKCGEILKH---------------NRSDAHRALNKNGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQN
        VLREFEKCGEILKH               NRSDAHRALNKNGIQINGVLIVGVKPVD MHRQALDEKLN+PGFMVTPPVSSRTSELLA RG  RPY+LQN
Subjt:  VLREFEKCGEILKH---------------NRSDAHRALNKNGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQN

Query:  GNGSARQSGGTIASPSKSLVSKVMDLMFGV
        GN SARQSGGTIASPSKSLVSKVMDLMFGV
Subjt:  GNGSARQSGGTIASPSKSLVSKVMDLMFGV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K7B2 Nuclear pore complex protein NUP35

7.1e-157

88.38

Show/hide

Query:  TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMK
        TVHRTPNSG +SLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRS SDFSPESGIPDYPVSPE KSDPRTPI+ HDFSS  K
Subjt:  TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMK

Query:  NKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNLVLR
        NKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLP AKLNEEEW+TVYGFSPADTNLVLR
Subjt:  NKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNLVLR

Query:  EFEKCGEILKH---------------NRSDAHRALNKNGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG
        EFEKCGEILKH               NRSDA +ALNKNGIQINGVLIVGVKPVD MHRQAL+E+LNNPGFMV PPVSSRTSELLA RGP RPY+LQNG  
Subjt:  EFEKCGEILKH---------------NRSDAHRALNKNGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG

Query:  SARQSGGTIASPSKSLVSKVMDLMFGV
        SAR SGG IASPSKSLVSKVMDLMFGV
Subjt:  SARQSGGTIASPSKSLVSKVMDLMFGV

A0A1S3CH09 Nuclear pore complex protein NUP35

2.7e-156

88.07

Show/hide

Query:  TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMK
        TVHRTPNSG +SLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRS SDFSPESGIPDYPVSPE KSDPRTPI+ HDFSS  K
Subjt:  TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMK

Query:  NKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNLVLR
        NKSNASTSYTPI+GQ SRQGSAGFSWWSTSKGGGSE+EDKGKSSPVEGVIQPGALITLPTPREVARPEV+RNCLP AKLNEEEW+TVYGFSPADTNLVLR
Subjt:  NKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNLVLR

Query:  EFEKCGEILKH---------------NRSDAHRALNKNGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG
        EFEKCGEILKH               NRSDA +ALNKNGIQINGVLIVGVKPVD MHRQALDEKLNNPGFMV PPVSSRTSELLA RGP  PYSLQNGN 
Subjt:  EFEKCGEILKH---------------NRSDAHRALNKNGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG

Query:  SARQSGGTIASPSKSLVSKVMDLMFGV
        SAR SGG IASPSKSLVSKVMDLMFGV
Subjt:  SARQSGGTIASPSKSLVSKVMDLMFGV

A0A5A7U592 Nuclear pore complex protein NUP35

4.1e-157

88.38

Show/hide

Query:  TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMK
        TVHRTPNSG +SLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRS SDFSPESGIPDYPVSPE KSDPRTPI+ HDFSS  K
Subjt:  TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMK

Query:  NKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNLVLR
        NKSNASTSYTPI+GQ SRQGSAGFSWWSTSKGGGSE+EDKGKSSPVEGVIQPGALITLPTPREVARPEV+RNCLP AKLNEEEW+TVYGFSPADTNLVLR
Subjt:  NKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNLVLR

Query:  EFEKCGEILKH---------------NRSDAHRALNKNGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG
        EFEKCGEILKH               NRSDA +ALNKNGIQINGVLIVGVKPVD MHRQALDEKLNNPGFMV PPVSSRTSELLA RGP RPYSLQNGN 
Subjt:  EFEKCGEILKH---------------NRSDAHRALNKNGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG

Query:  SARQSGGTIASPSKSLVSKVMDLMFGV
        SAR SGG IASPSKSLVSKVMDLMFGV
Subjt:  SARQSGGTIASPSKSLVSKVMDLMFGV

A0A6J1DCV4 Nuclear pore complex protein NUP35

1.2e-156

87.16

Show/hide

Query:  TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMK
        T+HRTPNSGRQS+FYQDLASPVT+RKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDR  SDFSPESGIPDYP+SPEIKSDPRTPIQSHDFSS MK
Subjt:  TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMK

Query:  NKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNLVLR
        NKSNASTSYTP SGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEG +QPGALI LPTPREVARPEVQRNC PA KLNEEEW+TVYGFSPADTNLVLR
Subjt:  NKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNLVLR

Query:  EFEKCGEILKH---------------NRSDAHRALNKNGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG
        EFEKCGEILKH               NRSDAH+ALNKNG+QINGVLIVGVKPVD MHRQALDEK+NNPGFMV PPV SRT+ELLA RGP R Y+LQNGN 
Subjt:  EFEKCGEILKH---------------NRSDAHRALNKNGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG

Query:  SARQSGGTIASPSKSLVSKVMDLMFGV
        +ARQSGGTIASPSKSLVSKVMDLMFGV
Subjt:  SARQSGGTIASPSKSLVSKVMDLMFGV

A0A6J1JYW9 Nuclear pore complex protein NUP35

1.3e-150

85.06

Show/hide

Query:  TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMK
        TVHRT NSGRQSLFYQDLASPV+TR+GKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPE+KSDP TPIQSHDFSS MK
Subjt:  TVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMK

Query:  NKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNLVLR
        +KSNASTS+TPIS QQSRQ SAGFSWWST KGGGSEQEDKGKSSPVEGVIQPGALITL TPREVARPEVQRNCLPA KLNEEEW+TVYGFSPADTNLVLR
Subjt:  NKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNLVLR

Query:  EFEKCGEILKH---------------NRSDAHRALNKNGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG
        EFEKCGEILKH               NRS AH+AL+KNGIQING+LIVGVKPVD + RQ LDEKLNNPGFMV PPVSSRT+EL    GP RPY+ QNGN 
Subjt:  EFEKCGEILKH---------------NRSDAHRALNKNGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNG

Query:  SARQSGG-TIASPSKSLVSKVMDLMFGV
         ARQSGG TIASPSKSLVSKVMDLMFGV
Subjt:  SARQSGG-TIASPSKSLVSKVMDLMFGV

SwissProt top hits

e value

%identity

Alignment

O04326 Nuclear pore complex protein NUP35

2.5e-106

64.13

Show/hide

Query:  HRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQS--HDFSSSMK
        HRTP SGRQSL +QDLASPV+ R+GKFS+PGQAAAVSALWRENFG SDLPPPP++TL+DR  SDFSPESGI DY  SP+ KSD RTP QS   +  +  K
Subjt:  HRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQS--HDFSSSMK

Query:  NKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGS-EQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNLVL
         K  AS S++ ++ QQS+Q S   SWWS SK G S EQ+DKGK SPVEGV+QPGAL+TLP PREVARPEVQR  +P   L+EEEW+TVYGFSP DTNLVL
Subjt:  NKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGS-EQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNLVL

Query:  REFEKCGEILKH---------------NRSDAHRALNKNGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGN
        REFEKCG +LKH               NRSDAH+ALNK G+ INGV+IVGVKPVD + +QAL+E+LNN GFM  PP SS  +     R  +RP  LQNG+
Subjt:  REFEKCGEILKH---------------NRSDAHRALNKNGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGN

Query:  G-SARQSGGTIASPSKSLVSKVMDLMFGV
          S + SGG +ASPSKS+VSK  DLMFGV
Subjt:  G-SARQSGGTIASPSKSLVSKVMDLMFGV

Q6P6X9 Nucleoporin NUP35

1.8e-08

26.59

Show/hide

Query:  TPNSGRQSL---FYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMKN
        +P  G Q L      DL +PVT +   F   G A   S L          P P V T +D+SG+   P   I D      +   P               
Subjt:  TPNSGRQSL---FYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMKN

Query:  KSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNLVLRE
        K   +  +TP+SG Q   G+    +   S      Q+ K                T  +P +V     Q + L +    ++ W+TV+GF PA  + +L +
Subjt:  KSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNLVLRE

Query:  FEKCGEILKH--------------NRSDAHRALNKNGIQINGVLIVGVKP-VDLMHRQALDEKLNNPGFMVTPPVS---SRTSELLAMRGPARPYS-LQN
        F + G ILKH              ++  A +AL+K+G      +++GVKP +D    ++LD K +    + TPPV    + +  L   R   RP S    
Subjt:  FEKCGEILKH--------------NRSDAHRALNKNGIQINGVLIVGVKP-VDLMHRQALDEKLNNPGFMVTPPVS---SRTSELLAMRGPARPYS-LQN

Query:  GNGSARQSGGTIASPSK--SLVSKVMDLMFG
         + S  Q      +P K  S VSK M+ MFG
Subjt:  GNGSARQSGGTIASPSK--SLVSKVMDLMFG

Arabidopsis top hits

e value

%identity

Alignment

AT3G16310.1 mitotic phosphoprotein N' end (MPPN) family protein

1.7e-107

64.13

Show/hide

Query:  HRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQS--HDFSSSMK
        HRTP SGRQSL +QDLASPV+ R+GKFS+PGQAAAVSALWRENFG SDLPPPP++TL+DR  SDFSPESGI DY  SP+ KSD RTP QS   +  +  K
Subjt:  HRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQS--HDFSSSMK

Query:  NKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGS-EQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNLVL
         K  AS S++ ++ QQS+Q S   SWWS SK G S EQ+DKGK SPVEGV+QPGAL+TLP PREVARPEVQR  +P   L+EEEW+TVYGFSP DTNLVL
Subjt:  NKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGS-EQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNLVL

Query:  REFEKCGEILKH---------------NRSDAHRALNKNGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGN
        REFEKCG +LKH               NRSDAH+ALNK G+ INGV+IVGVKPVD + +QAL+E+LNN GFM  PP SS  +     R  +RP  LQNG+
Subjt:  REFEKCGEILKH---------------NRSDAHRALNKNGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGN

Query:  G-SARQSGGTIASPSKSLVSKVMDLMFGV
          S + SGG +ASPSKS+VSK  DLMFGV
Subjt:  G-SARQSGGTIASPSKSLVSKVMDLMFGV

Sequences

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CDS sequence

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ATGAACACTGTGCATAGAACTCCCAATTCTGGGAGGCAGTCATTGTTCTACCAAGATTTAGCATCTCCTGTTACGACGCGGAAAGGGAAATTTTCAACTCCAGGTCAGGC
AGCTGCTGTATCTGCTTTATGGCGGGAGAATTTTGGAAACTCAGATCTTCCTCCTCCTCCGGTTTTCACCTTGGAAGACCGCTCGGGCTCAGATTTTTCTCCTGAGTCTG
GGATTCCTGATTATCCTGTTTCCCCAGAAATTAAATCAGACCCAAGGACCCCTATCCAAAGTCACGACTTCTCTTCGTCGATGAAAAACAAGTCAAATGCCAGCACTTCA
TACACACCAATTAGTGGACAACAAAGCCGGCAGGGATCAGCTGGCTTTAGTTGGTGGTCGACATCGAAAGGTGGTGGGAGTGAGCAAGAAGATAAGGGGAAAAGTTCACC
AGTTGAAGGTGTGATTCAACCTGGTGCATTAATCACACTTCCAACCCCTAGGGAAGTTGCCAGACCGGAAGTGCAGAGGAATTGCTTGCCTGCAGCAAAACTCAATGAGG
AGGAATGGCTTACTGTCTATGGATTCTCCCCGGCTGATACAAATCTTGTTTTGAGGGAATTTGAAAAATGCGGTGAGATCTTGAAACATAACCGATCTGATGCTCACAGG
GCTCTCAACAAAAATGGTATTCAAATTAATGGGGTGCTAATTGTTGGTGTGAAACCAGTGGACCTAATGCACCGGCAGGCACTAGATGAAAAGTTAAACAACCCAGGATT
CATGGTTACCCCTCCGGTATCTTCTCGAACCTCAGAACTCCTTGCAATGAGAGGGCCGGCGCGTCCTTACAGTCTTCAAAATGGTAACGGTAGTGCACGGCAGTCAGGAG
GTACCATTGCTTCACCATCGAAATCATTAGTATCTAAGGTCATGGATTTGATGTTTGGAGTCTAA

mRNA sequence

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Protein sequence

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MNTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSSMKNKSNASTS
YTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWLTVYGFSPADTNLVLREFEKCGEILKHNRSDAHR
ALNKNGIQINGVLIVGVKPVDLMHRQALDEKLNNPGFMVTPPVSSRTSELLAMRGPARPYSLQNGNGSARQSGGTIASPSKSLVSKVMDLMFGV

Lsi02G030020 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome