; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi02G030030 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi02G030030
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCASP-like protein
Genome locationchr02:36112100..36119835
RNA-Seq ExpressionLsi02G030030
SyntenyLsi02G030030
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsIPR006459 - Casparian strip membrane protein
IPR006702 - Casparian strip membrane protein domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025825.1 CASP-like protein 3A1 [Cucurbita argyrosperma subsp. argyrosperma]8.1e-4582.95Show/hide
Query:  MSSVPEVAVQLPETTKVAAMASESSTINELMEPPERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVL
        MSSVPEVAVQ+PE TKVAAMAS+S TI  L+EP +RS DRLRADL QL LRLIC+ATS TAM+LMVTA ESSTVSIYGFELPVHSKWSFSD FEYLVGV 
Subjt:  MSSVPEVAVQLPETTKVAAMASESSTINELMEPPERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVL

Query:  AAVAAYSLLQLLVTASKLARKSPVLSSRS
         AVAAYSLLQLLVT SKL RKSPVL SRS
Subjt:  AAVAAYSLLQLLVTASKLARKSPVLSSRS

XP_022151223.1 CASP-like protein 3A1 [Momordica charantia]3.1e-4482.17Show/hide
Query:  MSSVPEVAVQLPETTKVAAMASESSTINELMEPPERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVL
        M SVPEVA+QLPETTKVAA ASES  I+  MEPPER+F RLRADLYQL LRL+CIATS TA+ LMVTAKE+STVSIYGFELPVHSKWSFSDAFEYLVGV 
Subjt:  MSSVPEVAVQLPETTKVAAMASESSTINELMEPPERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVL

Query:  AAVAAYSLLQLLVTASKLARKSPVLSSRS
           AAYSLLQLLVTASKL RKSPV  SRS
Subjt:  AAVAAYSLLQLLVTASKLARKSPVLSSRS

XP_022964006.1 CASP-like protein 3A1 [Cucurbita moschata]8.9e-4482.81Show/hide
Query:  MSSVPEVAVQLPETTKVAAMASESSTINELMEPPERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVL
        MSSV EVAVQLPE TKVAAMAS+S TI  L+EP +RS DRLRADL QL LRLIC+ATS TAM+LMVTA ESSTVSIYGFELPVHSKWSFSD FEYLVGV 
Subjt:  MSSVPEVAVQLPETTKVAAMASESSTINELMEPPERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVL

Query:  AAVAAYSLLQLLVTASKLARKSPVLSSR
         AVAAYSLLQLLVT SKL RKSPVL SR
Subjt:  AAVAAYSLLQLLVTASKLARKSPVLSSR

XP_023000388.1 CASP-like protein 3A1 [Cucurbita maxima]5.2e-4482.17Show/hide
Query:  MSSVPEVAVQLPETTKVAAMASESSTINELMEPPERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVL
        MSSVPEVAVQLPE TKVAAMAS+S TI  L+EP +RS DRLRADL QL LRLIC+ATS TAM+LMVTA ESSTVSIYGFELPVHS WSFSD FEYLVGV 
Subjt:  MSSVPEVAVQLPETTKVAAMASESSTINELMEPPERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVL

Query:  AAVAAYSLLQLLVTASKLARKSPVLSSRS
         AVA YSLLQLLVT SKL RKSPVL SRS
Subjt:  AAVAAYSLLQLLVTASKLARKSPVLSSRS

XP_038899301.1 CASP-like protein 3A1 [Benincasa hispida]9.2e-4989.15Show/hide
Query:  MSSVPEVAVQLPETTKVAAMASESSTINELMEPPERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVL
        M SVPE+AVQLPETTKVAAMASES TI+  ME PERS DRLRADLYQL LRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGV 
Subjt:  MSSVPEVAVQLPETTKVAAMASESSTINELMEPPERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVL

Query:  AAVAAYSLLQLLVTASKLARKSPVLSSRS
         AVAAYSLLQLL+TAS L RKSPVLSSRS
Subjt:  AAVAAYSLLQLLVTASKLARKSPVLSSRS

TrEMBL top hitse value%identityAlignment
A0A1S3CGY3 CASP-like protein1.4e-4278.29Show/hide
Query:  MSSVPEVAVQLPETTKVAAMASESSTINELMEPPERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVL
        M   PE AV+LPETT+VAA+ASES   +  MEPP+R FDRLRADLYQLALRLICIATSTT + LMVTAK+S+TVSIYGFE PV SKWSFS+ FEYLVGV 
Subjt:  MSSVPEVAVQLPETTKVAAMASESSTINELMEPPERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVL

Query:  AAVAAYSLLQLLVTASKLARKSPVLSSRS
         AVAAYSLLQLLVTAS LAR+SPVLSSRS
Subjt:  AAVAAYSLLQLLVTASKLARKSPVLSSRS

A0A5A7U5A3 CASP-like protein4.8e-4379.07Show/hide
Query:  MSSVPEVAVQLPETTKVAAMASESSTINELMEPPERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVL
        M   PE AV+LPETTKVAA+ASES   +  MEPP+R FDRLRADLYQLALRLICIATSTT + LMVTAK+S+TVSIYGFE PV SKWSFS+ FEYLVGV 
Subjt:  MSSVPEVAVQLPETTKVAAMASESSTINELMEPPERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVL

Query:  AAVAAYSLLQLLVTASKLARKSPVLSSRS
         AVAAYSLLQLLVTAS LAR+SPVLSSRS
Subjt:  AAVAAYSLLQLLVTASKLARKSPVLSSRS

A0A6J1DBL6 CASP-like protein1.5e-4482.17Show/hide
Query:  MSSVPEVAVQLPETTKVAAMASESSTINELMEPPERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVL
        M SVPEVA+QLPETTKVAA ASES  I+  MEPPER+F RLRADLYQL LRL+CIATS TA+ LMVTAKE+STVSIYGFELPVHSKWSFSDAFEYLVGV 
Subjt:  MSSVPEVAVQLPETTKVAAMASESSTINELMEPPERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVL

Query:  AAVAAYSLLQLLVTASKLARKSPVLSSRS
           AAYSLLQLLVTASKL RKSPV  SRS
Subjt:  AAVAAYSLLQLLVTASKLARKSPVLSSRS

A0A6J1HHN1 CASP-like protein4.3e-4482.81Show/hide
Query:  MSSVPEVAVQLPETTKVAAMASESSTINELMEPPERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVL
        MSSV EVAVQLPE TKVAAMAS+S TI  L+EP +RS DRLRADL QL LRLIC+ATS TAM+LMVTA ESSTVSIYGFELPVHSKWSFSD FEYLVGV 
Subjt:  MSSVPEVAVQLPETTKVAAMASESSTINELMEPPERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVL

Query:  AAVAAYSLLQLLVTASKLARKSPVLSSR
         AVAAYSLLQLLVT SKL RKSPVL SR
Subjt:  AAVAAYSLLQLLVTASKLARKSPVLSSR

A0A6J1KMH1 CASP-like protein2.5e-4482.17Show/hide
Query:  MSSVPEVAVQLPETTKVAAMASESSTINELMEPPERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVL
        MSSVPEVAVQLPE TKVAAMAS+S TI  L+EP +RS DRLRADL QL LRLIC+ATS TAM+LMVTA ESSTVSIYGFELPVHS WSFSD FEYLVGV 
Subjt:  MSSVPEVAVQLPETTKVAAMASESSTINELMEPPERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVL

Query:  AAVAAYSLLQLLVTASKLARKSPVLSSRS
         AVA YSLLQLLVT SKL RKSPVL SRS
Subjt:  AAVAAYSLLQLLVTASKLARKSPVLSSRS

SwissProt top hitse value%identityAlignment
A7P756 CASP-like protein 3A18.7e-2651.91Show/hide
Query:  MSSVPEVAVQLPETTKVAAMASESSTINELMEPP--ERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVG
        + + PE+ +QLPE    A +A+E+ T++  + PP  +RS  R   D+  + LR +C+ TS  A++LM TAKE++++SIYGF LPV SKWSFSD+FEYLVG
Subjt:  MSSVPEVAVQLPETTKVAAMASESSTINELMEPP--ERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVG

Query:  VLAAVAAYSLLQLLVTASKLARKSPVLSSRS
        V AAVAA++LLQL+++ S+L RKSPV+ SR+
Subjt:  VLAAVAAYSLLQLLVTASKLARKSPVLSSRS

B9GGL4 CASP-like protein 3A22.4e-2353.23Show/hide
Query:  EVAVQLPETTKVAAMASESSTINELMEPPERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVLAAVAA
        EVAVQLPE+  V      ++          R F R +A++  + LR++C+ TS  A++ MVTA++SSTVSIYGF LP+ SKWSFS +FEY+VGV A VAA
Subjt:  EVAVQLPETTKVAAMASESSTINELMEPPERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVLAAVAA

Query:  YSLLQLLVTASKLARKSPVLSSRS
        +SLLQLL++ S+L RKSPV+ SRS
Subjt:  YSLLQLLVTASKLARKSPVLSSRS

B9GXD6 CASP-like protein 3A14.8e-2453.68Show/hide
Query:  MSSVPEVAVQLPETTKVAAMASESSTINELM-------EPPERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAF
        ++   EVAVQLPE +KVAA     +    L+           R F R +A++  + LRL+CI TS  A++ M TA++SST+SIYGF LPV SKWSFS +F
Subjt:  MSSVPEVAVQLPETTKVAAMASESSTINELM-------EPPERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAF

Query:  EYLVGVLAAVAAYSLLQLLVTASKLARKSPVLSSRS
        EYLVGV AAVAA+SLLQLL++ S+L RKSPV+ SRS
Subjt:  EYLVGVLAAVAAYSLLQLLVTASKLARKSPVLSSRS

B9RQG7 CASP-like protein 3A13.9e-2659.54Show/hide
Query:  EVAVQLPETTKVAAMASESSTINELMEPP-------ERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVG
        EVAVQLPE +KVAA  +     NE M  P        + F R +AD+  + LRL+C  TS TA++ MVTA +SSTVSIYGF LPV SKWSFS +FEYLVG
Subjt:  EVAVQLPETTKVAAMASESSTINELMEPP-------ERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVG

Query:  VLAAVAAYSLLQLLVTASKLARKSPVLSSRS
        V AAVAA+SLLQLL++ S+L RKSPV+ SRS
Subjt:  VLAAVAAYSLLQLLVTASKLARKSPVLSSRS

Q3EB59 CASP-like protein 3A11.1e-1548.86Show/hide
Query:  RADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVLAAVAAYSLLQLLVTASKLARKSPVLSSRS
        R D+    LR +C+A ST A+TLMVTA+E+S  ++YGFE  +H+ WS SD+  YLV V +A   YSL+QL+++ ++L RKSPV+ +R+
Subjt:  RADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVLAAVAAYSLLQLLVTASKLARKSPVLSSRS

Arabidopsis top hitse value%identityAlignment
AT1G79780.1 Uncharacterised protein family (UPF0497)2.3e-1347.06Show/hide
Query:  DLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVLAAVAAYSLLQLLVTASKLARKSPVLSSR
        +L Q+ALR  C+A S TAM +M+TA E     IYGF+L + S WSFS +++Y+VG  A    YSLLQL +   +L   SP+  SR
Subjt:  DLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVLAAVAAYSLLQLLVTASKLARKSPVLSSR

AT3G16300.1 Uncharacterised protein family (UPF0497)7.6e-1748.86Show/hide
Query:  RADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVLAAVAAYSLLQLLVTASKLARKSPVLSSRS
        R D+    LR +C+A ST A+TLMVTA+E+S  ++YGFE  +H+ WS SD+  YLV V +A   YSL+QL+++ ++L RKSPV+ +R+
Subjt:  RADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVLAAVAAYSLLQLLVTASKLARKSPVLSSRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCGGTGCCGGAGGTGGCGGTGCAGCTACCGGAGACGACTAAGGTGGCGGCTATGGCGTCCGAGAGCAGCACAATCAACGAACTGATGGAACCGCCGGAGCGAAG
CTTCGACCGTCTGAGAGCCGATTTGTATCAGTTAGCGCTGAGGCTGATTTGTATTGCTACGTCCACGACGGCAATGACGTTGATGGTTACCGCCAAGGAGTCTAGCACTG
TTTCCATCTACGGATTTGAACTTCCCGTTCACTCCAAGTGGTCGTTCTCAGATGCATTCGAGTACCTTGTTGGAGTTTTAGCGGCTGTCGCTGCCTACTCTTTGTTGCAG
TTGCTCGTTACTGCTTCCAAGCTTGCCAGGAAGTCCCCAGTTCTTAGCTCCAGAAGCTAA
mRNA sequenceShow/hide mRNA sequence
AACGAACACAGAATCCTCTCTCACGCACTCAGAGAGAATCTCAACGGAAAGATACGCCTGAAATTTTTCGAAAGACTGGTGAACGAAAAATGTCGTCGGTGCCGGAGGTG
GCGGTGCAGCTACCGGAGACGACTAAGGTGGCGGCTATGGCGTCCGAGAGCAGCACAATCAACGAACTGATGGAACCGCCGGAGCGAAGCTTCGACCGTCTGAGAGCCGA
TTTGTATCAGTTAGCGCTGAGGCTGATTTGTATTGCTACGTCCACGACGGCAATGACGTTGATGGTTACCGCCAAGGAGTCTAGCACTGTTTCCATCTACGGATTTGAAC
TTCCCGTTCACTCCAAGTGGTCGTTCTCAGATGCATTCGAGTACCTTGTTGGAGTTTTAGCGGCTGTCGCTGCCTACTCTTTGTTGCAGTTGCTCGTTACTGCTTCCAAG
CTTGCCAGGAAGTCCCCAGTTCTTAGCTCCAGAAGCTAAGCCTTGCTCATTTTCGCTATTGATCTGGCCTTGGGATATGCAGTGATGAGTGCTGGATTAGCTGCAGCTGG
GATCTCAAATATGAATCGCACTGGCATTCGACTCATAACTCTGCCTAACTTCTGTAAGCCATTACAACGCTTCTGTAACCACGTTGCCATCTCTATTGCCTTCACATTCT
TTACCTGTTGCTTGCTCACCACTTCTGCCATCCAATACGTTATTTGGCTCTCCAAAAACTAAACCTCCTCACAAAAAACAAACTTTTTTGTCTCTGGGAAAACATACGAT
AAAGAATATGGCGCTTCTCTGTTCCTTCTGATTCCATGAAGTGTTCCTTAAATCAAGAGAAACTTGTATGGTATATATACATGGGAGCATCCCACTGTTTTTAGCTGAAA
TTGTTCATTTAGATAGTTATTAGTTGTTATATGGTGTATTAACTTTGATCTCGTGAGAATTTTAAAAGAGTAAGGTTTGTTTGAAACTCCCCAACTGTTTTGTAGCTTGA
AATTTGAACTTTTAGAACTCAGAATGCACATAGTAATTTATGATGAAGGGAAACTTTTG
Protein sequenceShow/hide protein sequence
MSSVPEVAVQLPETTKVAAMASESSTINELMEPPERSFDRLRADLYQLALRLICIATSTTAMTLMVTAKESSTVSIYGFELPVHSKWSFSDAFEYLVGVLAAVAAYSLLQ
LLVTASKLARKSPVLSSRS