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Lsi03G001790 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G001790
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr03:2354234..2354557
RNA-Seq ExpressionLsi03G001790
SyntenyLsi03G001790
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039429.1 hypothetical protein E6C27_scaffold64G002360 [Cucumis melo var. makuwa]2.8e-1953.21Show/hide
Query:  MGGRCSFWG--VAVVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMFEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHC
        MGGR SF G  + VV +M  TIL SS+ CRGSVL K NATYG V T E++IY DITR+LM   SK  TG T  PN+  C+ GPGN  G C G A+  + C
Subjt:  MGGRCSFWG--VAVVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMFEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHC

Query:  NAYAGAPAC
        N Y     C
Subjt:  NAYAGAPAC

KAA0039430.1 hypothetical protein E6C27_scaffold64G002370 [Cucumis melo var. makuwa]1.2e-2259.26Show/hide
Query:  MGGRCSFWGVA-VVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMFEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCN
        MG R SF G+  VV MML TI CSSH CRGSVL K NATY  V T ELLIY DI RYLMF    AKTGKT++ NV +C  G GN    C G+    K CN
Subjt:  MGGRCSFWGVA-VVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMFEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCN

Query:  AYAGAPAC
        AY G  AC
Subjt:  AYAGAPAC

KAG6578548.1 hypothetical protein SDJN03_22996, partial [Cucurbita argyrosperma subsp. sororia]6.7e-2962.26Show/hide
Query:  MGGRCSFWGVAVVAMMLTTILCSSHCCRGSVLTKPNATYGEVTAELLIYGDITRYLMFEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCNAY
        MGGRCSFWGVAV A+M+T ILCSS+  R S L + NATYGEV  ELL+  +I R+L F++ K  T KT NP VKSC  GPGNPMG C G+    KHCN+Y
Subjt:  MGGRCSFWGVAVVAMMLTTILCSSHCCRGSVLTKPNATYGEVTAELLIYGDITRYLMFEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCNAY

Query:  AGAPAC
        AGA AC
Subjt:  AGAPAC

KGN52518.1 hypothetical protein Csa_007870 [Cucumis sativus]2.8e-1956.12Show/hide
Query:  VAVVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMFEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCNAYAGAPAC
        + VV MML TIL SSH CR SVL K NATYG V TAELLIY D+TRYLM++ + +KTGKT +  V  CD G GN    C G++   K CNAY     C
Subjt:  VAVVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMFEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCNAYAGAPAC

KGN52519.1 hypothetical protein Csa_008872 [Cucumis sativus]1.3e-1953.21Show/hide
Query:  MGGRCSFWG--VAVVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMFEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHC
        MGGR SF G  + VV +M  TIL SS+ CRGS+L K NAT G V T EL+I  DITRYL+F+ + A TG T +PN+ +C  G GN    C G A+ T+ C
Subjt:  MGGRCSFWG--VAVVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMFEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHC

Query:  NAYAGAPAC
        NAY G  AC
Subjt:  NAYAGAPAC

TrEMBL top hitse value%identityAlignment
A0A0A0KSJ4 Uncharacterized protein1.4e-1956.12Show/hide
Query:  VAVVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMFEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCNAYAGAPAC
        + VV MML TIL SSH CR SVL K NATYG V TAELLIY D+TRYLM++ + +KTGKT +  V  CD G GN    C G++   K CNAY     C
Subjt:  VAVVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMFEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCNAYAGAPAC

A0A0A0KUG7 Uncharacterized protein6.2e-2053.21Show/hide
Query:  MGGRCSFWG--VAVVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMFEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHC
        MGGR SF G  + VV +M  TIL SS+ CRGS+L K NAT G V T EL+I  DITRYL+F+ + A TG T +PN+ +C  G GN    C G A+ T+ C
Subjt:  MGGRCSFWG--VAVVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMFEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHC

Query:  NAYAGAPAC
        NAY G  AC
Subjt:  NAYAGAPAC

A0A0A0KVT8 Uncharacterized protein8.1e-2056.48Show/hide
Query:  MGGRCSFWGVA-VVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMFEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCN
        MG R SF G+  VV +ML TIL SSH CRGSVL K NATY  V T EL+IYGDI R+LM   SKAKTGKT   NV +C  G GN    C G+      C+
Subjt:  MGGRCSFWGVA-VVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMFEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCN

Query:  AYAGAPAC
        AY G  AC
Subjt:  AYAGAPAC

A0A5D3BNE4 Uncharacterized protein1.4e-1953.21Show/hide
Query:  MGGRCSFWG--VAVVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMFEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHC
        MGGR SF G  + VV +M  TIL SS+ CRGSVL K NATYG V T E++IY DITR+LM   SK  TG T  PN+  C+ GPGN  G C G A+  + C
Subjt:  MGGRCSFWG--VAVVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMFEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHC

Query:  NAYAGAPAC
        N Y     C
Subjt:  NAYAGAPAC

A0A5D3BR80 Uncharacterized protein6.0e-2359.26Show/hide
Query:  MGGRCSFWGVA-VVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMFEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCN
        MG R SF G+  VV MML TI CSSH CRGSVL K NATY  V T ELLIY DI RYLMF    AKTGKT++ NV +C  G GN    C G+    K CN
Subjt:  MGGRCSFWGVA-VVAMMLTTILCSSHCCRGSVLTKPNATYGEV-TAELLIYGDITRYLMFEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCN

Query:  AYAGAPAC
        AY G  AC
Subjt:  AYAGAPAC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGGTCGTTGTTCGTTTTGGGGAGTAGCAGTGGTGGCGATGATGTTAACAACCATCCTCTGTTCCAGTCATTGCTGCAGAGGTTCGGTTCTGACCAAGCCCAACGC
CACCTACGGCGAGGTTACGGCGGAGTTGCTGATCTATGGTGATATAACTCGGTATCTCATGTTTGAAGATTCCAAAGCCAAGACAGGGAAGACCGATAACCCAAACGTCA
AATCTTGTGACAAAGGCCCCGGAAACCCCATGGGCGCCTGCGAGGGTACCGCCGATAAGACGAAGCATTGCAACGCGTACGCCGGCGCCCCCGCTTGCAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGGTCGTTGTTCGTTTTGGGGAGTAGCAGTGGTGGCGATGATGTTAACAACCATCCTCTGTTCCAGTCATTGCTGCAGAGGTTCGGTTCTGACCAAGCCCAACGC
CACCTACGGCGAGGTTACGGCGGAGTTGCTGATCTATGGTGATATAACTCGGTATCTCATGTTTGAAGATTCCAAAGCCAAGACAGGGAAGACCGATAACCCAAACGTCA
AATCTTGTGACAAAGGCCCCGGAAACCCCATGGGCGCCTGCGAGGGTACCGCCGATAAGACGAAGCATTGCAACGCGTACGCCGGCGCCCCCGCTTGCAAATAA
Protein sequenceShow/hide protein sequence
MGGRCSFWGVAVVAMMLTTILCSSHCCRGSVLTKPNATYGEVTAELLIYGDITRYLMFEDSKAKTGKTDNPNVKSCDKGPGNPMGACEGTADKTKHCNAYAGAPACK