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Lsi03G002090 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G002090
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionF-box protein At3g07870-like
Genome locationchr03:2697044..2703289
RNA-Seq ExpressionLsi03G002090
SyntenyLsi03G002090
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8648955.1 hypothetical protein Csa_007901 [Cucumis sativus]3.9e-2361.7Show/hide
Query:  MHCLDID-TMSYVASYGFENDDWP-KIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKL-PQPKVKNKNIHCVYGFGFSRKTKRTVVARAL
        M+C+DI+ T + +AS+ F+N+DWP KI+I NSCNGLLYI+K  D+NFCNGILN MTNEFF L  QPKVKN++I C YGFGF+ KTK+  + +A+
Subjt:  MHCLDID-TMSYVASYGFENDDWP-KIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKL-PQPKVKNKNIHCVYGFGFSRKTKRTVVARAL

KAE8653057.1 hypothetical protein Csa_020016 [Cucumis sativus]8.3e-2642.13Show/hide
Query:  MEKLECKRRIMNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASS--LKFVPNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKM
        +E +E   R M IN G  LPP I K IFSKL I +LP CRLV  TWN LVL+YASS  L+F+ N FL+ST           R  N  L       CNPKM
Subjt:  MEKLECKRRIMNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASS--LKFVPNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKM

Query:  HCLDIDTMSYVASYGFE-------------NDDWP-KIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKLPQPKVKNKNIHCVYGFGFSRKTKR
        HC+++DT      + F+             + DW   I +  SCNGL+ I K SD  +C GI N MTNEF ++ +    +     +YGFGFS  TK+
Subjt:  HCLDIDTMSYVASYGFE-------------NDDWP-KIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKLPQPKVKNKNIHCVYGFGFSRKTKR

XP_004141602.1 F-box protein At3g07870 [Cucumis sativus]1.8e-6062.83Show/hide
Query:  MEKLECKRRIMNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASSLKFVPNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKMHC
        MEKLECKR   NIN G +LPPN+V+VI  KLTI +LP CRLV +TWNHL+LNYASS KF+PN+     FL ++Y+I +SRNCNC   C P+FKCNPKM+C
Subjt:  MEKLECKRRIMNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASSLKFVPNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKMHC

Query:  LDID-TMSYVASYGFENDDWP-KIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKL-PQPKVKNKNIHCVYGFGFSRKTKRTVVARAL
        +DI+ T + +AS+ F+N+DWP KI+I NSCNGLLYI+K  D+NFCNGILN MTNEFF L  QPKVKN++I C YGFGF+ KTK+  + +A+
Subjt:  LDID-TMSYVASYGFENDDWP-KIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKL-PQPKVKNKNIHCVYGFGFSRKTKRTVVARAL

XP_008459707.1 PREDICTED: F-box protein At3g07870-like [Cucumis melo]9.2e-4155.19Show/hide
Query:  MEKLECKRRI-MNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASSLKFVPNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKMH
        ME LE K+RI MNIN    LPP+IV+ IFSKL+I NLP CR+VCKTWN+LVL YASS KF+P     +T  +S  D + +     Y+    +  CNPK+H
Subjt:  MEKLECKRRI-MNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASSLKFVPNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKMH

Query:  CLDIDT-MSYVASYGFENDDWPKIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKLPQPKVKNKNIHCVYGFGFSRKTKR
        C+DID+  SYVAS+GFE  DW  I I NSCNGLLYI KF+ D+ C GILN MTNEF ++PQP+++  ++H + GFGFS +TK+
Subjt:  CLDIDT-MSYVASYGFENDDWPKIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKLPQPKVKNKNIHCVYGFGFSRKTKR

XP_011648473.2 F-box protein At3g07870 [Cucumis sativus]8.3e-2642.13Show/hide
Query:  MEKLECKRRIMNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASS--LKFVPNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKM
        +E +E   R M IN G  LPP I K IFSKL I +LP CRLV  TWN LVL+YASS  L+F+ N FL+ST           R  N  L       CNPKM
Subjt:  MEKLECKRRIMNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASS--LKFVPNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKM

Query:  HCLDIDTMSYVASYGFE-------------NDDWP-KIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKLPQPKVKNKNIHCVYGFGFSRKTKR
        HC+++DT      + F+             + DW   I +  SCNGL+ I K SD  +C GI N MTNEF ++ +    +     +YGFGFS  TK+
Subjt:  HCLDIDTMSYVASYGFE-------------NDDWP-KIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKLPQPKVKNKNIHCVYGFGFSRKTKR

TrEMBL top hitse value%identityAlignment
A0A0A0KSJ2 F-box domain-containing protein8.6e-6162.83Show/hide
Query:  MEKLECKRRIMNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASSLKFVPNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKMHC
        MEKLECKR   NIN G +LPPN+V+VI  KLTI +LP CRLV +TWNHL+LNYASS KF+PN+     FL ++Y+I +SRNCNC   C P+FKCNPKM+C
Subjt:  MEKLECKRRIMNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASSLKFVPNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKMHC

Query:  LDID-TMSYVASYGFENDDWP-KIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKL-PQPKVKNKNIHCVYGFGFSRKTKRTVVARAL
        +DI+ T + +AS+ F+N+DWP KI+I NSCNGLLYI+K  D+NFCNGILN MTNEFF L  QPKVKN++I C YGFGF+ KTK+  + +A+
Subjt:  LDID-TMSYVASYGFENDDWP-KIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKL-PQPKVKNKNIHCVYGFGFSRKTKRTVVARAL

A0A0A0LPC6 Uncharacterized protein1.3e-2943.59Show/hide
Query:  MEKLECKRRIMNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASSLKFVPNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKMHC
        ME +E   R M+I+WG  LPP I K IFSKL I NLP CR VCKTWNHLVL+YASS +     FL + FL+ST D    R  N  L       CNPKMHC
Subjt:  MEKLECKRRIMNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASSLKFVPNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKMHC

Query:  LDIDTMSYVASYGFEND-------------DWP-KIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKLPQPKVKNKNIHCVYGFGFSRKTKR
        +++D         F+ +             DW   I + + CNGL++I K SD  +C GI N MTNEFF++ +    +   H  YGFG S  +K+
Subjt:  LDIDTMSYVASYGFEND-------------DWP-KIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKLPQPKVKNKNIHCVYGFGFSRKTKR

A0A0A0LUP7 F-box domain-containing protein3.0e-2943.01Show/hide
Query:  MEKLECKRRIMNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASSLKFVPNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKMHC
        ME +E   R M+I+WG  LPP I K+IFSKL I NLP CR VCKTWNHLVL+YASS +     FL + FL+ST D + +              CNPKMH 
Subjt:  MEKLECKRRIMNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASSLKFVPNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKMHC

Query:  LDIDT----------MSYVASYGFE-NDDWP-KIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKLPQPKVKNKNIHCVYGFGFSRKTKR
        +++D           M ++ S  F+   DW   I + + CNGL++I K SD  +C GI N MTNEFF++ +    +   +  YGFG S  TK+
Subjt:  LDIDT----------MSYVASYGFE-NDDWP-KIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKLPQPKVKNKNIHCVYGFGFSRKTKR

A0A0A0LWG1 F-box domain-containing protein4.0e-2642.13Show/hide
Query:  MEKLECKRRIMNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASS--LKFVPNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKM
        +E +E   R M IN G  LPP I K IFSKL I +LP CRLV  TWN LVL+YASS  L+F+ N FL+ST           R  N  L       CNPKM
Subjt:  MEKLECKRRIMNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASS--LKFVPNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKM

Query:  HCLDIDTMSYVASYGFE-------------NDDWP-KIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKLPQPKVKNKNIHCVYGFGFSRKTKR
        HC+++DT      + F+             + DW   I +  SCNGL+ I K SD  +C GI N MTNEF ++ +    +     +YGFGFS  TK+
Subjt:  HCLDIDTMSYVASYGFE-------------NDDWP-KIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKLPQPKVKNKNIHCVYGFGFSRKTKR

A0A1S3CB99 F-box protein At3g07870-like4.4e-4155.19Show/hide
Query:  MEKLECKRRI-MNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASSLKFVPNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKMH
        ME LE K+RI MNIN    LPP+IV+ IFSKL+I NLP CR+VCKTWN+LVL YASS KF+P     +T  +S  D + +     Y+    +  CNPK+H
Subjt:  MEKLECKRRI-MNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASSLKFVPNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKMH

Query:  CLDIDT-MSYVASYGFENDDWPKIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKLPQPKVKNKNIHCVYGFGFSRKTKR
        C+DID+  SYVAS+GFE  DW  I I NSCNGLLYI KF+ D+ C GILN MTNEF ++PQP+++  ++H + GFGFS +TK+
Subjt:  CLDIDT-MSYVASYGFENDDWPKIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKLPQPKVKNKNIHCVYGFGFSRKTKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATCACAGGAAGGAGCTTAGAACTTGTGAGGAAGGACTTGAATGGGAATATAGATTTTAGGTTAAATTGGGGCCAATTGACCAAAAAGAACAACACAAACAAAAA
TAACTACAATATTACATATCGAGCTAAACCCAACTTGTGTTTAATGGAGAAGTTAGAATGTAAAAGGAGGATTATGAATATAAATTGGGGTCCGGAGCTTCCGCCCAATA
TTGTTAAGGTAATATTCTCCAAACTTACTATTTGCAATTTGCCAATTTGTAGGCTCGTATGTAAAACTTGGAATCATCTAGTTTTAAATTACGCTTCATCTCTTAAATTT
GTTCCAAATGTTTTTCTTGTTAGTACCTTTCTTGTTAGCACCTACGATATCCTCTTCAGTCGCAATTGCAATTGTTATCTTCGTTGTTTTCCTTCTTTTAAGTGCAATCC
CAAGATGCATTGTCTTGATATCGATACAATGAGTTACGTTGCCTCATATGGGTTTGAGAACGATGATTGGCCTAAAATCGAAATTTTCAATTCCTGCAATGGATTGTTGT
ATATTTACAAATTTAGTGATGACAATTTTTGCAACGGCATATTAAATTTGATGACTAACGAGTTCTTCAAACTACCTCAACCTAAAGTAAAAAATAAGAATATCCATTGC
GTCTACGGATTTGGTTTTAGTCGTAAGACGAAGCGAACAGTTGTTGCTCGTGCTCTTGCTATTACTGTTGATGCTTTTACTCGTCATGGTGTTGTGCTACTGCCTACAAA
ATATATAAATTTCAATGAAACTTTATCTTCAAAACTTTCAATGAAAATGAAAATGAAAGATTTTGTTACCTTGTCGGCGATATCCGATCTGAGAAGTGAGAGATTGAGAC
AGATTAGAGATCGATCTAACGAAGTGAGTGAGAGATTGAGAGAAATCAGGCCCAGATCTAGAGCGACGTTGAGTGTTGCTGGGCTCGTCGGATGGGCTGCCGTGGGATGG
GCTAGAGCGACATCGGATGGGCTGCCTGCTGGGTCTGATCGCCATCGACGATGTGGTGACTGTGAGGGGCTGGTCGCCGTCGACGATGTGGTGACTGTGAGGGGTTGGTC
GCCGTCGACGATGTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAATCACAGGAAGGAGCTTAGAACTTGTGAGGAAGGACTTGAATGGGAATATAGATTTTAGGTTAAATTGGGGCCAATTGACCAAAAAGAACAACACAAACAAAAA
TAACTACAATATTACATATCGAGCTAAACCCAACTTGTGTTTAATGGAGAAGTTAGAATGTAAAAGGAGGATTATGAATATAAATTGGGGTCCGGAGCTTCCGCCCAATA
TTGTTAAGGTAATATTCTCCAAACTTACTATTTGCAATTTGCCAATTTGTAGGCTCGTATGTAAAACTTGGAATCATCTAGTTTTAAATTACGCTTCATCTCTTAAATTT
GTTCCAAATGTTTTTCTTGTTAGTACCTTTCTTGTTAGCACCTACGATATCCTCTTCAGTCGCAATTGCAATTGTTATCTTCGTTGTTTTCCTTCTTTTAAGTGCAATCC
CAAGATGCATTGTCTTGATATCGATACAATGAGTTACGTTGCCTCATATGGGTTTGAGAACGATGATTGGCCTAAAATCGAAATTTTCAATTCCTGCAATGGATTGTTGT
ATATTTACAAATTTAGTGATGACAATTTTTGCAACGGCATATTAAATTTGATGACTAACGAGTTCTTCAAACTACCTCAACCTAAAGTAAAAAATAAGAATATCCATTGC
GTCTACGGATTTGGTTTTAGTCGTAAGACGAAGCGAACAGTTGTTGCTCGTGCTCTTGCTATTACTGTTGATGCTTTTACTCGTCATGGTGTTGTGCTACTGCCTACAAA
ATATATAAATTTCAATGAAACTTTATCTTCAAAACTTTCAATGAAAATGAAAATGAAAGATTTTGTTACCTTGTCGGCGATATCCGATCTGAGAAGTGAGAGATTGAGAC
AGATTAGAGATCGATCTAACGAAGTGAGTGAGAGATTGAGAGAAATCAGGCCCAGATCTAGAGCGACGTTGAGTGTTGCTGGGCTCGTCGGATGGGCTGCCGTGGGATGG
GCTAGAGCGACATCGGATGGGCTGCCTGCTGGGTCTGATCGCCATCGACGATGTGGTGACTGTGAGGGGCTGGTCGCCGTCGACGATGTGGTGACTGTGAGGGGTTGGTC
GCCGTCGACGATGTGGTAG
Protein sequenceShow/hide protein sequence
MKITGRSLELVRKDLNGNIDFRLNWGQLTKKNNTNKNNYNITYRAKPNLCLMEKLECKRRIMNINWGPELPPNIVKVIFSKLTICNLPICRLVCKTWNHLVLNYASSLKF
VPNVFLVSTFLVSTYDILFSRNCNCYLRCFPSFKCNPKMHCLDIDTMSYVASYGFENDDWPKIEIFNSCNGLLYIYKFSDDNFCNGILNLMTNEFFKLPQPKVKNKNIHC
VYGFGFSRKTKRTVVARALAITVDAFTRHGVVLLPTKYINFNETLSSKLSMKMKMKDFVTLSAISDLRSERLRQIRDRSNEVSERLREIRPRSRATLSVAGLVGWAAVGW
ARATSDGLPAGSDRHRRCGDCEGLVAVDDVVTVRGWSPSTMW